E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G63970 AT5G63970 |
| fragaria_vesca | FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 |
| malus_domestica | MD16G1282700.v1.1 |
| prunus_persica | Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0122151 |
| rosa_laevigata | RLG00000018654 |
| rosa_multiflora | Rmu_sc0000805.1_g000043 Rmu_sc0004574.1_g000050 |
| rosa_roxburghii | Rroxscaffold_2G00121990 |
| rosa_rugosa | Rorug02G0236600 |
| rosa_samantha | Rh2AG293400 Rh2BG303800 Rh2CG282100 Rh2DG317300 |
| rosa_wichuraiana | Rw2G023520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1198 |
| Acc65I | GGTACC | 1 cut(s) | 1010 |
| AccB1I | GGYRCC | 3 cut(s) | 586, 871, 1010 |
| AccBSI | CCGCTC | 1 cut(s) | 352 |
| AccII | CGCG | 2 cut(s) | 12, 207 |
| AccIII | TCCGGA | 1 cut(s) | 744 |
| AclI | AACGTT | 1 cut(s) | 440 |
| AclWI | GGATC | 3 cut(s) | 31, 50, 382 |
| AcoI | YGGCCR | 2 cut(s) | 144, 202 |
| AcsI | RAATTY | 3 cut(s) | 301, 562, 670 |
| AcuI | CTGAAG | 3 cut(s) | 861, 957, 1077 |
| AcyI | GRCGYC | 1 cut(s) | 897 |
| AfaI | GTAC | 4 cut(s) | 476, 626, 1012, 1244 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 142, 153 |
| AgsI | TTSAA | 6 cut(s) | 22, 435, 595, 815, 1079, 1100 |
| AjnI | CCWGG | 2 cut(s) | 279, 763 |
| AluBI | AGCT | 9 cut(s) | 234, 416, 469, 511, 701, 713, 761, 920, 1200 |
| AluI | AGCT | 9 cut(s) | 234, 416, 469, 511, 701, 713, 761, 920, 1200 |
| Alw21I | GWGCWC | 1 cut(s) | 513 |
| Alw26I | GTCTC | 3 cut(s) | 121, 943, 1084 |
| AlwI | GGATC | 3 cut(s) | 31, 50, 382 |
| Ama87I | CYCGRG | 1 cut(s) | 455 |
| Aor13HI | TCCGGA | 1 cut(s) | 744 |
| AoxI | GGCC | 2 cut(s) | 144, 202 |
| ApeKI | GCWGC | 4 cut(s) | 422, 695, 698, 1223 |
| ApoI | RAATTY | 3 cut(s) | 301, 562, 670 |
| Asp718I | GGTACC | 1 cut(s) | 1010 |
| AspLEI | GCGC | 1 cut(s) | 14 |
| AsuC2I | CCSGG | 1 cut(s) | 154 |
| AsuHPI | GGTGA | 4 cut(s) | 500, 652, 924, 986 |
| AvaI | CYCGRG | 1 cut(s) | 455 |
| BanI | GGYRCC | 3 cut(s) | 586, 871, 1010 |
| BanII | GRGCYC | 1 cut(s) | 513 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 859, 891 |
| BbsI | GAAGAC | 1 cut(s) | 1269 |
| Bbv12I | GWGCWC | 1 cut(s) | 513 |
| BbvI | GCAGC | 4 cut(s) | 409, 682, 710, 1210 |
| BccI | CCATC | 4 cut(s) | 236, 748, 1225, 1235 |
| BceAI | ACGGC | 4 cut(s) | 34, 324, 600, 910 |
| BciT130I | CCWGG | 2 cut(s) | 281, 765 |
| BclI | TGATCA | 1 cut(s) | 106 |
| BcnI | CCSGG | 1 cut(s) | 154 |
| BcoDI | GTCTC | 3 cut(s) | 121, 943, 1084 |
| BfaI | CTAG | 1 cut(s) | 1119 |
| BfmI | CTRYAG | 1 cut(s) | 696 |
| BfuAI | ACCTGC | 1 cut(s) | 1198 |
| Bme1390I | CCNGG | 3 cut(s) | 154, 281, 765 |
| BmeT110I | CYCGRG | 1 cut(s) | 455 |
| BmiI | GGNNCC | 3 cut(s) | 588, 873, 1012 |
| BmrFI | CCNGG | 3 cut(s) | 154, 281, 765 |
| BmsI | GCATC | 1 cut(s) | 409 |
| BpiI | GAAGAC | 1 cut(s) | 1269 |
| BpmI | CTGGAG | 2 cut(s) | 432, 491 |
| BpuEI | CTTGAG | 1 cut(s) | 519 |
| BpuMI | CCSGG | 1 cut(s) | 154 |
| BsaAI | YACGTR | 2 cut(s) | 485, 624 |
| BsaHI | GRCGYC | 1 cut(s) | 897 |
| BsaJI | CCNNGG | 5 cut(s) | 79, 205, 280, 426, 732 |
| BsaWI | WCCGGW | 1 cut(s) | 744 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 103, 133, 323, 353 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 142, 153 |
| Bse118I | RCCGGY | 2 cut(s) | 14, 1043 |
| BseAI | TCCGGA | 1 cut(s) | 744 |
| BseBI | CCWGG | 2 cut(s) | 281, 765 |
| BseDI | CCNNGG | 5 cut(s) | 79, 205, 280, 426, 732 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 142, 153 |
| BseRI | GAGGAG | 3 cut(s) | 62, 441, 1102 |
| BseXI | GCAGC | 4 cut(s) | 409, 682, 710, 1210 |
| BseYI | CCCAGC | 1 cut(s) | 1196 |
| BsgI | GTGCAG | 2 cut(s) | 903, 1149 |
| Bsh1236I | CGCG | 2 cut(s) | 12, 207 |
| Bsh1285I | CGRYCG | 1 cut(s) | 158 |
| BshFI | GGCC | 2 cut(s) | 146, 204 |
| BshNI | GGYRCC | 3 cut(s) | 586, 871, 1010 |
| BsiEI | CGRYCG | 1 cut(s) | 158 |
| BsiHKAI | GWGCWC | 1 cut(s) | 513 |
| BsiHKCI | CYCGRG | 1 cut(s) | 455 |
| BsiSI | CCGG | 6 cut(s) | 15, 143, 154, 745, 1044, 1112 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 142, 153 |
| BsmAI | GTCTC | 3 cut(s) | 121, 943, 1084 |
| BsmBI | CGTCTC | 1 cut(s) | 121 |
| BsmI | GAATGC | 2 cut(s) | 928, 991 |
| BsnI | GGCC | 2 cut(s) | 146, 204 |
| BsoBI | CYCGRG | 1 cut(s) | 455 |
| Bsp1286I | GDGCHC | 1 cut(s) | 513 |
| Bsp13I | TCCGGA | 1 cut(s) | 744 |
| Bsp143I | GATC | 4 cut(s) | 36, 55, 106, 374 |
| Bsp19I | CCATGG | 2 cut(s) | 426, 732 |
| BspANI | GGCC | 2 cut(s) | 146, 204 |
| BspEI | TCCGGA | 1 cut(s) | 744 |
| BspFNI | CGCG | 2 cut(s) | 12, 207 |
| BspHI | TCATGA | 1 cut(s) | 1251 |
| BspLI | GGNNCC | 3 cut(s) | 588, 873, 1012 |
| BspMAI | CTGCAG | 1 cut(s) | 700 |
| BspMI | ACCTGC | 1 cut(s) | 1198 |
| BspPI | GGATC | 3 cut(s) | 31, 50, 382 |
| BspQI | GCTCTTC | 1 cut(s) | 309 |
| BspT107I | GGYRCC | 3 cut(s) | 586, 871, 1010 |
| BsrBI | CCGCTC | 1 cut(s) | 352 |
| BsrFI | RCCGGY | 2 cut(s) | 14, 1043 |
| BssAI | RCCGGY | 2 cut(s) | 14, 1043 |
| BssECI | CCNNGG | 5 cut(s) | 79, 205, 280, 426, 732 |
| BssMI | GATC | 4 cut(s) | 36, 55, 106, 374 |
| BssNI | GRCGYC | 1 cut(s) | 897 |
| BssT1I | CCWWGG | 2 cut(s) | 426, 732 |
| Bst2UI | CCWGG | 2 cut(s) | 281, 765 |
| Bst4CI | ACNGT | 3 cut(s) | 115, 187, 1029 |
| Bst6I | CTCTTC | 2 cut(s) | 80, 309 |
| BstACI | GRCGYC | 1 cut(s) | 897 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1142 |
| BstBAI | YACGTR | 2 cut(s) | 485, 624 |
| BstC8I | GCNNGC | 2 cut(s) | 321, 728 |
| BstDSI | CCRYGG | 3 cut(s) | 205, 426, 732 |
| BstFNI | CGCG | 2 cut(s) | 12, 207 |
| BstHHI | GCGC | 1 cut(s) | 14 |
| BstKTI | GATC | 4 cut(s) | 39, 58, 109, 377 |
| BstMAI | GTCTC | 3 cut(s) | 121, 943, 1084 |
| BstMBI | GATC | 4 cut(s) | 36, 55, 106, 374 |
| BstMCI | CGRYCG | 1 cut(s) | 158 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 422, 695, 727, 1142, 1181 |
| BstNI | CCWGG | 2 cut(s) | 281, 765 |
| BstSCI | CCNGG | 3 cut(s) | 152, 279, 763 |
| BstSFI | CTRYAG | 1 cut(s) | 696 |
| BstSNI | TACGTA | 1 cut(s) | 624 |
| BstUI | CGCG | 2 cut(s) | 12, 207 |
| BstV1I | GCAGC | 4 cut(s) | 409, 682, 710, 1210 |
| BstV2I | GAAGAC | 1 cut(s) | 1269 |
| BsuRI | GGCC | 2 cut(s) | 146, 204 |
| BtgI | CCRYGG | 3 cut(s) | 205, 426, 732 |
| BveI | ACCTGC | 1 cut(s) | 1198 |
| Cac8I | GCNNGC | 2 cut(s) | 321, 728 |
| CciI | TCATGA | 1 cut(s) | 1251 |
| CfoI | GCGC | 1 cut(s) | 14 |
| Cfr10I | RCCGGY | 2 cut(s) | 14, 1043 |
| Cfr42I | CCGCGG | 1 cut(s) | 208 |
| CseI | GACGC | 1 cut(s) | 886 |
| Csp6I | GTAC | 4 cut(s) | 475, 625, 1011, 1243 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 655, 690 |
| CviAII | CATG | 5 cut(s) | 427, 733, 808, 961, 1252 |
| CviQI | GTAC | 4 cut(s) | 475, 625, 1011, 1243 |
| DpnI | GATC | 4 cut(s) | 38, 57, 108, 376 |
| DpnII | GATC | 4 cut(s) | 36, 55, 106, 374 |
| EaeI | YGGCCR | 2 cut(s) | 144, 202 |
| Eam1104I | CTCTTC | 2 cut(s) | 80, 309 |
| EarI | CTCTTC | 2 cut(s) | 80, 309 |
| EciI | GGCGGA | 4 cut(s) | 225, 326, 344, 791 |
| Ecl136II | GAGCTC | 1 cut(s) | 511 |
| Eco105I | TACGTA | 1 cut(s) | 624 |
| Eco130I | CCWWGG | 2 cut(s) | 426, 732 |
| Eco24I | GRGCYC | 1 cut(s) | 513 |
| Eco53kI | GAGCTC | 1 cut(s) | 511 |
| Eco57I | CTGAAG | 3 cut(s) | 861, 957, 1077 |
| Eco88I | CYCGRG | 1 cut(s) | 455 |
| EcoICRI | GAGCTC | 1 cut(s) | 511 |
| EcoRII | CCWGG | 2 cut(s) | 279, 763 |
| EcoT14I | CCWWGG | 2 cut(s) | 426, 732 |
| EcoT38I | GRGCYC | 1 cut(s) | 513 |
| ErhI | CCWWGG | 2 cut(s) | 426, 732 |
| Esp3I | CGTCTC | 1 cut(s) | 121 |
| FaeI | CATG | 5 cut(s) | 430, 736, 811, 964, 1255 |
| FatI | CATG | 5 cut(s) | 426, 732, 807, 960, 1251 |
| FauI | CCCGC | 1 cut(s) | 54 |
| FbaI | TGATCA | 1 cut(s) | 106 |
| FriOI | GRGCYC | 1 cut(s) | 513 |
| FspBI | CTAG | 1 cut(s) | 1119 |
| GlaI | GCGC | 1 cut(s) | 13 |
| GsaI | CCCAGC | 1 cut(s) | 1200 |
| GsuI | CTGGAG | 2 cut(s) | 432, 491 |
| HaeIII | GGCC | 2 cut(s) | 146, 204 |
| HapII | CCGG | 6 cut(s) | 15, 143, 154, 745, 1044, 1112 |
| HgaI | GACGC | 1 cut(s) | 886 |
| HhaI | GCGC | 1 cut(s) | 14 |
| Hin1I | GRCGYC | 1 cut(s) | 897 |
| Hin1II | CATG | 5 cut(s) | 430, 736, 811, 964, 1255 |
| Hin6I | GCGC | 1 cut(s) | 12 |
| HinP1I | GCGC | 1 cut(s) | 12 |
| HinfI | GANTC | 7 cut(s) | 266, 530, 662, 811, 825, 951, 1274 |
| HpaII | CCGG | 6 cut(s) | 15, 143, 154, 745, 1044, 1112 |
| HphI | GGTGA | 4 cut(s) | 500, 652, 924, 986 |
| Hpy166II | GTNNAC | 1 cut(s) | 1243 |
| Hpy188I | TCNGA | 4 cut(s) | 55, 241, 956, 1057 |
| Hpy8I | GTNNAC | 1 cut(s) | 1243 |
| Hpy99I | CGWCG | 1 cut(s) | 310 |
| HpyCH4III | ACNGT | 3 cut(s) | 115, 187, 1029 |
| HpyCH4IV | ACGT | 3 cut(s) | 440, 484, 623 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 527, 698, 884, 928, 1105, 1130, 1136, 1207 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 422, 695, 727, 1142, 1181 |
| HpySE526I | ACGT | 3 cut(s) | 440, 484, 623 |
| Hsp92I | GRCGYC | 1 cut(s) | 897 |
| Hsp92II | CATG | 5 cut(s) | 430, 736, 811, 964, 1255 |
| HspAI | GCGC | 1 cut(s) | 12 |
| Kpn2I | TCCGGA | 1 cut(s) | 744 |
| KpnI | GGTACC | 1 cut(s) | 1014 |
| Ksp22I | TGATCA | 1 cut(s) | 106 |
| KspI | CCGCGG | 1 cut(s) | 208 |
| Kzo9I | GATC | 4 cut(s) | 36, 55, 106, 374 |
| LguI | GCTCTTC | 1 cut(s) | 309 |
| LmnI | GCTCC | 5 cut(s) | 75, 349, 413, 454, 766 |
| Lsp1109I | GCAGC | 4 cut(s) | 409, 682, 710, 1210 |
| LweI | GCATC | 1 cut(s) | 409 |
| MaeI | CTAG | 1 cut(s) | 1119 |
| MaeII | ACGT | 3 cut(s) | 440, 484, 623 |
| MaeIII | GTNAC | 1 cut(s) | 974 |
| MalI | GATC | 4 cut(s) | 38, 57, 108, 376 |
| MbiI | CCGCTC | 1 cut(s) | 352 |
| MboI | GATC | 4 cut(s) | 36, 55, 106, 374 |
| MboII | GAAGA | 8 cut(s) | 67, 326, 508, 569, 820, 1159, 1267, 1269 |
| MfeI | CAATTG | 1 cut(s) | 1038 |
| MhlI | GDGCHC | 1 cut(s) | 513 |
| MluCI | AATT | 7 cut(s) | 301, 562, 604, 670, 705, 789, 1038 |
| MlyI | GAGTC | 2 cut(s) | 945, 1283 |
| MmeI | TCCRAC | 1 cut(s) | 979 |
| MroI | TCCGGA | 1 cut(s) | 744 |
| MseI | TTAA | 1 cut(s) | 1124 |
| MspA1I | CMGCKG | 2 cut(s) | 207, 701 |
| MspI | CCGG | 6 cut(s) | 15, 143, 154, 745, 1044, 1112 |
| MspR9I | CCNGG | 3 cut(s) | 154, 281, 765 |
| MunI | CAATTG | 1 cut(s) | 1038 |
| Mva1269I | GAATGC | 2 cut(s) | 928, 991 |
| MvaI | CCWGG | 2 cut(s) | 281, 765 |
| MvnI | CGCG | 2 cut(s) | 12, 207 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 422, 695, 727, 1142, 1181 |
| NciI | CCSGG | 1 cut(s) | 154 |
| NcoI | CCATGG | 2 cut(s) | 426, 732 |
| NdeII | GATC | 4 cut(s) | 36, 55, 106, 374 |
| NlaIII | CATG | 5 cut(s) | 430, 736, 811, 964, 1255 |
| NlaIV | GGNNCC | 3 cut(s) | 588, 873, 1012 |
| NmeAIII | GCCGAG | 1 cut(s) | 60 |
| NmuCI | GTSAC | 1 cut(s) | 974 |
| PaeR7I | CTCGAG | 1 cut(s) | 455 |
| PagI | TCATGA | 1 cut(s) | 1251 |
| PciSI | GCTCTTC | 1 cut(s) | 309 |
| PctI | GAATGC | 2 cut(s) | 928, 991 |
| PfeI | GAWTC | 5 cut(s) | 266, 530, 662, 811, 825 |
| PflFI | GACNNNGTC | 1 cut(s) | 154 |
| PleI | GAGTC | 2 cut(s) | 945, 1282 |
| PpsI | GAGTC | 2 cut(s) | 945, 1282 |
| Ppu21I | YACGTR | 2 cut(s) | 485, 624 |
| Psp124BI | GAGCTC | 1 cut(s) | 513 |
| Psp1406I | AACGTT | 1 cut(s) | 440 |
| Psp6I | CCWGG | 2 cut(s) | 279, 763 |
| PspFI | CCCAGC | 1 cut(s) | 1196 |
| PspGI | CCWGG | 2 cut(s) | 279, 763 |
| PspN4I | GGNNCC | 3 cut(s) | 588, 873, 1012 |
| PstI | CTGCAG | 1 cut(s) | 700 |
| PsyI | GACNNNGTC | 1 cut(s) | 154 |
| PvuII | CAGCTG | 1 cut(s) | 701 |
| RsaI | GTAC | 4 cut(s) | 476, 626, 1012, 1244 |
| RsaNI | GTAC | 4 cut(s) | 475, 625, 1011, 1243 |
| SacI | GAGCTC | 1 cut(s) | 513 |
| SacII | CCGCGG | 1 cut(s) | 208 |
| SapI | GCTCTTC | 1 cut(s) | 309 |
| SaqAI | TTAA | 1 cut(s) | 1124 |
| Sau3AI | GATC | 4 cut(s) | 36, 55, 106, 374 |
| SchI | GAGTC | 2 cut(s) | 945, 1283 |
| ScrFI | CCNGG | 3 cut(s) | 154, 281, 765 |
| SduI | GDGCHC | 1 cut(s) | 513 |
| SfaNI | GCATC | 1 cut(s) | 409 |
| SfcI | CTRYAG | 1 cut(s) | 696 |
| Sfr274I | CTCGAG | 1 cut(s) | 455 |
| Sfr303I | CCGCGG | 1 cut(s) | 208 |
| SgrBI | CCGCGG | 1 cut(s) | 208 |
| SlaI | CTCGAG | 1 cut(s) | 455 |
| SmlI | CTYRAG | 2 cut(s) | 455, 534 |
| SmoI | CTYRAG | 2 cut(s) | 455, 534 |
| SnaBI | TACGTA | 1 cut(s) | 624 |
| Sse9I | AATT | 7 cut(s) | 301, 562, 604, 670, 705, 789, 1038 |
| SspI | AATATT | 1 cut(s) | 574 |
| SspMI | CTAG | 1 cut(s) | 1119 |
| SstI | GAGCTC | 1 cut(s) | 513 |
| StyD4I | CCNGG | 3 cut(s) | 152, 279, 763 |
| StyI | CCWWGG | 2 cut(s) | 426, 732 |
| TaaI | ACNGT | 3 cut(s) | 115, 187, 1029 |
| TaiI | ACGT | 3 cut(s) | 443, 487, 626 |
| TaqI | TCGA | 2 cut(s) | 305, 456 |
| TasI | AATT | 7 cut(s) | 301, 562, 604, 670, 705, 789, 1038 |
| TatI | WGTACW | 1 cut(s) | 474 |
| TauI | GCSGC | 7 cut(s) | 87, 90, 207, 210, 326, 329, 1064 |
| TfiI | GAWTC | 5 cut(s) | 266, 530, 662, 811, 825 |
| Tru1I | TTAA | 1 cut(s) | 1124 |
| Tru9I | TTAA | 1 cut(s) | 1124 |
| TseFI | GTSAC | 1 cut(s) | 974 |
| TseI | GCWGC | 4 cut(s) | 422, 695, 698, 1223 |
| Tsp45I | GTSAC | 1 cut(s) | 974 |
| TspDTI | ATGAA | 5 cut(s) | 401, 977, 1240, 1268, 1269 |
| Tth111I | GACNNNGTC | 1 cut(s) | 154 |
| XapI | RAATTY | 3 cut(s) | 301, 562, 670 |
| XhoI | CTCGAG | 1 cut(s) | 455 |
| XspI | CTAG | 1 cut(s) | 1119 |