Rorug02G0236600

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
23647633 .. 23651135
3503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0236600.1

Sequence Viewer

Length: 1284 bp
ATGCACCACCGCGCCGGTTTCAACCTCTCTCGCTTGATCCAATCCCCGCCGTCCGATCCCGACCCCTCGCTCCTCTTCCTCGGCGGCGGCTTGTTCCTCCACCCTGATCAAACCGTCTCTCCCACCTTCCTTTCCCTCCTTCCGGCCAAGACCCGGTCGGGTTCGGGTCGGTGTTTCAGCAAAACGGTGCGTTTTGGGGGTGGCCGCGGCGGAGGGGCGTTCTTGTGTGTGAGCTTGTCAGATGGAAACGAGGGGTATGTTCGGGAATCGGGAGAAGTCCTGGGGCAAAATGGGAATACAAATTCGACGGCGGAAGAGCAGGCGGCGGCGGAGGTTGTGTTTGAGAAGGAGCGGAGTGAGATTGTGGAGAAGGGATCAGGTGCTATGAATACTACCAAGCATCTCTGGTCTGGAGCTGTTGCTGCCATGGTTTCAAGAACGTTTGTTGCTCCTCTCGAGAGGCTAAAGCTGGAGTACATAATACGTGGTGAGCAGAAGAACTTGGTTGAGCTCATCAAGACGATTGCAGATTCTCAAGGGCTGAAAGGATTTTGGAAAGGGAATTTTGTGAATATTCTTCGCACGGCACCCTTCAAGGCTATCAATTTCTATGCCTATGATACGTACAGAAATCATCTGGTGAAGTTGTCGGGGAATGAGGAATCCACGAATTTTGAGAGGTTTCTTGCTGGTGCTGCAGCTGGAATTACAGCTACCTTGCTCTGCTTGCCCATGGACACTATCCGGACAAAGATGGTAGCTCCTGGTGGAGAAGCATTGGGTGGTGTAATTGGTGCTTTCCGCCACATGATTCAAACCGAAGGATTCTTCTCTCTTTACAAGGGCTTACTACCCTCTATTGTCAGTATGGCACCTTCAGGTGCAGTTTTCTACGGCGTCTATGATATACTGAAATCAGCTTATCTGCATTCACCTGAAGGGAGGGAGAGACTCCGACACATGAAACAAGAAGGTGACAAACTGAATGCTCTGGAACAAATGGAGTTGGGTACCATTAGAACATTACTGTATGGGGCAATTGCCGGTTGTTGCTCTGAAGCCGCTACATATCCTTTTGAAGTTGTGAGGAGACACCTTCAAATGCAAGTTCCGGCAACTAGATTAAGTGCAGTTGCAACTTGTGCGAAGATTGTTGAGCAAGGAGGCGTTCCTGCTCTTTATGCTGGATTGATACCCAGCTTGTTGCAGGTCTTACCATCTGCTGCCATCAGTTATTTTGTGTACGAGTTCATGAAGATTATTCTCAAAGTAGAGTCTTCATAG

Protein Analysis

427

Amino Acids

46.28

Weight (kDa)

8.76

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 129 - 215 2.3e-19 Mitochondrial carrier protein
Mito_carr PF00153 222 - 309 2.1e-20 Mitochondrial carrier protein
Mito_carr PF00153 337 - 423 8.8e-19 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1198
Acc65I GGTACC 1 cut(s) 1010
AccB1I GGYRCC 3 cut(s) 586, 871, 1010
AccBSI CCGCTC 1 cut(s) 352
AccII CGCG 2 cut(s) 12, 207
AccIII TCCGGA 1 cut(s) 744
AclI AACGTT 1 cut(s) 440
AclWI GGATC 3 cut(s) 31, 50, 382
AcoI YGGCCR 2 cut(s) 144, 202
AcsI RAATTY 3 cut(s) 301, 562, 670
AcuI CTGAAG 3 cut(s) 861, 957, 1077
AcyI GRCGYC 1 cut(s) 897
AfaI GTAC 4 cut(s) 476, 626, 1012, 1244
AfiI CCNNNNNNNGG 2 cut(s) 142, 153
AgsI TTSAA 6 cut(s) 22, 435, 595, 815, 1079, 1100
AjnI CCWGG 2 cut(s) 279, 763
AluBI AGCT 9 cut(s) 234, 416, 469, 511, 701, 713, 761, 920, 1200
AluI AGCT 9 cut(s) 234, 416, 469, 511, 701, 713, 761, 920, 1200
Alw21I GWGCWC 1 cut(s) 513
Alw26I GTCTC 3 cut(s) 121, 943, 1084
AlwI GGATC 3 cut(s) 31, 50, 382
Ama87I CYCGRG 1 cut(s) 455
Aor13HI TCCGGA 1 cut(s) 744
AoxI GGCC 2 cut(s) 144, 202
ApeKI GCWGC 4 cut(s) 422, 695, 698, 1223
ApoI RAATTY 3 cut(s) 301, 562, 670
Asp718I GGTACC 1 cut(s) 1010
AspLEI GCGC 1 cut(s) 14
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 4 cut(s) 500, 652, 924, 986
AvaI CYCGRG 1 cut(s) 455
BanI GGYRCC 3 cut(s) 586, 871, 1010
BanII GRGCYC 1 cut(s) 513
BarI GAAGNNNNNNTAC 2 cut(s) 859, 891
BbsI GAAGAC 1 cut(s) 1269
Bbv12I GWGCWC 1 cut(s) 513
BbvI GCAGC 4 cut(s) 409, 682, 710, 1210
BccI CCATC 4 cut(s) 236, 748, 1225, 1235
BceAI ACGGC 4 cut(s) 34, 324, 600, 910
BciT130I CCWGG 2 cut(s) 281, 765
BclI TGATCA 1 cut(s) 106
BcnI CCSGG 1 cut(s) 154
BcoDI GTCTC 3 cut(s) 121, 943, 1084
BfaI CTAG 1 cut(s) 1119
BfmI CTRYAG 1 cut(s) 696
BfuAI ACCTGC 1 cut(s) 1198
Bme1390I CCNGG 3 cut(s) 154, 281, 765
BmeT110I CYCGRG 1 cut(s) 455
BmiI GGNNCC 3 cut(s) 588, 873, 1012
BmrFI CCNGG 3 cut(s) 154, 281, 765
BmsI GCATC 1 cut(s) 409
BpiI GAAGAC 1 cut(s) 1269
BpmI CTGGAG 2 cut(s) 432, 491
BpuEI CTTGAG 1 cut(s) 519
BpuMI CCSGG 1 cut(s) 154
BsaAI YACGTR 2 cut(s) 485, 624
BsaHI GRCGYC 1 cut(s) 897
BsaJI CCNNGG 5 cut(s) 79, 205, 280, 426, 732
BsaWI WCCGGW 1 cut(s) 744
BsaXI ACNNNNNCTCC 4 cut(s) 103, 133, 323, 353
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 153
Bse118I RCCGGY 2 cut(s) 14, 1043
BseAI TCCGGA 1 cut(s) 744
BseBI CCWGG 2 cut(s) 281, 765
BseDI CCNNGG 5 cut(s) 79, 205, 280, 426, 732
BseLI CCNNNNNNNGG 2 cut(s) 142, 153
BseRI GAGGAG 3 cut(s) 62, 441, 1102
BseXI GCAGC 4 cut(s) 409, 682, 710, 1210
BseYI CCCAGC 1 cut(s) 1196
BsgI GTGCAG 2 cut(s) 903, 1149
Bsh1236I CGCG 2 cut(s) 12, 207
Bsh1285I CGRYCG 1 cut(s) 158
BshFI GGCC 2 cut(s) 146, 204
BshNI GGYRCC 3 cut(s) 586, 871, 1010
BsiEI CGRYCG 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 513
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 6 cut(s) 15, 143, 154, 745, 1044, 1112
BslI CCNNNNNNNGG 2 cut(s) 142, 153
BsmAI GTCTC 3 cut(s) 121, 943, 1084
BsmBI CGTCTC 1 cut(s) 121
BsmI GAATGC 2 cut(s) 928, 991
BsnI GGCC 2 cut(s) 146, 204
BsoBI CYCGRG 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 513
Bsp13I TCCGGA 1 cut(s) 744
Bsp143I GATC 4 cut(s) 36, 55, 106, 374
Bsp19I CCATGG 2 cut(s) 426, 732
BspANI GGCC 2 cut(s) 146, 204
BspEI TCCGGA 1 cut(s) 744
BspFNI CGCG 2 cut(s) 12, 207
BspHI TCATGA 1 cut(s) 1251
BspLI GGNNCC 3 cut(s) 588, 873, 1012
BspMAI CTGCAG 1 cut(s) 700
BspMI ACCTGC 1 cut(s) 1198
BspPI GGATC 3 cut(s) 31, 50, 382
BspQI GCTCTTC 1 cut(s) 309
BspT107I GGYRCC 3 cut(s) 586, 871, 1010
BsrBI CCGCTC 1 cut(s) 352
BsrFI RCCGGY 2 cut(s) 14, 1043
BssAI RCCGGY 2 cut(s) 14, 1043
BssECI CCNNGG 5 cut(s) 79, 205, 280, 426, 732
BssMI GATC 4 cut(s) 36, 55, 106, 374
BssNI GRCGYC 1 cut(s) 897
BssT1I CCWWGG 2 cut(s) 426, 732
Bst2UI CCWGG 2 cut(s) 281, 765
Bst4CI ACNGT 3 cut(s) 115, 187, 1029
Bst6I CTCTTC 2 cut(s) 80, 309
BstACI GRCGYC 1 cut(s) 897
BstAPI GCANNNNNTGC 1 cut(s) 1142
BstBAI YACGTR 2 cut(s) 485, 624
BstC8I GCNNGC 2 cut(s) 321, 728
BstDSI CCRYGG 3 cut(s) 205, 426, 732
BstFNI CGCG 2 cut(s) 12, 207
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 4 cut(s) 39, 58, 109, 377
BstMAI GTCTC 3 cut(s) 121, 943, 1084
BstMBI GATC 4 cut(s) 36, 55, 106, 374
BstMCI CGRYCG 1 cut(s) 158
BstMWI GCNNNNNNNGC 5 cut(s) 422, 695, 727, 1142, 1181
BstNI CCWGG 2 cut(s) 281, 765
BstSCI CCNGG 3 cut(s) 152, 279, 763
BstSFI CTRYAG 1 cut(s) 696
BstSNI TACGTA 1 cut(s) 624
BstUI CGCG 2 cut(s) 12, 207
BstV1I GCAGC 4 cut(s) 409, 682, 710, 1210
BstV2I GAAGAC 1 cut(s) 1269
BsuRI GGCC 2 cut(s) 146, 204
BtgI CCRYGG 3 cut(s) 205, 426, 732
BveI ACCTGC 1 cut(s) 1198
Cac8I GCNNGC 2 cut(s) 321, 728
CciI TCATGA 1 cut(s) 1251
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 2 cut(s) 14, 1043
Cfr42I CCGCGG 1 cut(s) 208
CseI GACGC 1 cut(s) 886
Csp6I GTAC 4 cut(s) 475, 625, 1011, 1243
CspCI CAANNNNNGTGG 2 cut(s) 655, 690
CviAII CATG 5 cut(s) 427, 733, 808, 961, 1252
CviQI GTAC 4 cut(s) 475, 625, 1011, 1243
DpnI GATC 4 cut(s) 38, 57, 108, 376
DpnII GATC 4 cut(s) 36, 55, 106, 374
EaeI YGGCCR 2 cut(s) 144, 202
Eam1104I CTCTTC 2 cut(s) 80, 309
EarI CTCTTC 2 cut(s) 80, 309
EciI GGCGGA 4 cut(s) 225, 326, 344, 791
Ecl136II GAGCTC 1 cut(s) 511
Eco105I TACGTA 1 cut(s) 624
Eco130I CCWWGG 2 cut(s) 426, 732
Eco24I GRGCYC 1 cut(s) 513
Eco53kI GAGCTC 1 cut(s) 511
Eco57I CTGAAG 3 cut(s) 861, 957, 1077
Eco88I CYCGRG 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 511
EcoRII CCWGG 2 cut(s) 279, 763
EcoT14I CCWWGG 2 cut(s) 426, 732
EcoT38I GRGCYC 1 cut(s) 513
ErhI CCWWGG 2 cut(s) 426, 732
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 5 cut(s) 430, 736, 811, 964, 1255
FatI CATG 5 cut(s) 426, 732, 807, 960, 1251
FauI CCCGC 1 cut(s) 54
FbaI TGATCA 1 cut(s) 106
FriOI GRGCYC 1 cut(s) 513
FspBI CTAG 1 cut(s) 1119
GlaI GCGC 1 cut(s) 13
GsaI CCCAGC 1 cut(s) 1200
GsuI CTGGAG 2 cut(s) 432, 491
HaeIII GGCC 2 cut(s) 146, 204
HapII CCGG 6 cut(s) 15, 143, 154, 745, 1044, 1112
HgaI GACGC 1 cut(s) 886
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 897
Hin1II CATG 5 cut(s) 430, 736, 811, 964, 1255
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 7 cut(s) 266, 530, 662, 811, 825, 951, 1274
HpaII CCGG 6 cut(s) 15, 143, 154, 745, 1044, 1112
HphI GGTGA 4 cut(s) 500, 652, 924, 986
Hpy166II GTNNAC 1 cut(s) 1243
Hpy188I TCNGA 4 cut(s) 55, 241, 956, 1057
Hpy8I GTNNAC 1 cut(s) 1243
Hpy99I CGWCG 1 cut(s) 310
HpyCH4III ACNGT 3 cut(s) 115, 187, 1029
HpyCH4IV ACGT 3 cut(s) 440, 484, 623
HpyCH4V TGCA 9 cut(s) 4, 527, 698, 884, 928, 1105, 1130, 1136, 1207
HpyF10VI GCNNNNNNNGC 5 cut(s) 422, 695, 727, 1142, 1181
HpySE526I ACGT 3 cut(s) 440, 484, 623
Hsp92I GRCGYC 1 cut(s) 897
Hsp92II CATG 5 cut(s) 430, 736, 811, 964, 1255
HspAI GCGC 1 cut(s) 12
Kpn2I TCCGGA 1 cut(s) 744
KpnI GGTACC 1 cut(s) 1014
Ksp22I TGATCA 1 cut(s) 106
KspI CCGCGG 1 cut(s) 208
Kzo9I GATC 4 cut(s) 36, 55, 106, 374
LguI GCTCTTC 1 cut(s) 309
LmnI GCTCC 5 cut(s) 75, 349, 413, 454, 766
Lsp1109I GCAGC 4 cut(s) 409, 682, 710, 1210
LweI GCATC 1 cut(s) 409
MaeI CTAG 1 cut(s) 1119
MaeII ACGT 3 cut(s) 440, 484, 623
MaeIII GTNAC 1 cut(s) 974
MalI GATC 4 cut(s) 38, 57, 108, 376
MbiI CCGCTC 1 cut(s) 352
MboI GATC 4 cut(s) 36, 55, 106, 374
MboII GAAGA 8 cut(s) 67, 326, 508, 569, 820, 1159, 1267, 1269
MfeI CAATTG 1 cut(s) 1038
MhlI GDGCHC 1 cut(s) 513
MluCI AATT 7 cut(s) 301, 562, 604, 670, 705, 789, 1038
MlyI GAGTC 2 cut(s) 945, 1283
MmeI TCCRAC 1 cut(s) 979
MroI TCCGGA 1 cut(s) 744
MseI TTAA 1 cut(s) 1124
MspA1I CMGCKG 2 cut(s) 207, 701
MspI CCGG 6 cut(s) 15, 143, 154, 745, 1044, 1112
MspR9I CCNGG 3 cut(s) 154, 281, 765
MunI CAATTG 1 cut(s) 1038
Mva1269I GAATGC 2 cut(s) 928, 991
MvaI CCWGG 2 cut(s) 281, 765
MvnI CGCG 2 cut(s) 12, 207
MwoI GCNNNNNNNGC 5 cut(s) 422, 695, 727, 1142, 1181
NciI CCSGG 1 cut(s) 154
NcoI CCATGG 2 cut(s) 426, 732
NdeII GATC 4 cut(s) 36, 55, 106, 374
NlaIII CATG 5 cut(s) 430, 736, 811, 964, 1255
NlaIV GGNNCC 3 cut(s) 588, 873, 1012
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 974
PaeR7I CTCGAG 1 cut(s) 455
PagI TCATGA 1 cut(s) 1251
PciSI GCTCTTC 1 cut(s) 309
PctI GAATGC 2 cut(s) 928, 991
PfeI GAWTC 5 cut(s) 266, 530, 662, 811, 825
PflFI GACNNNGTC 1 cut(s) 154
PleI GAGTC 2 cut(s) 945, 1282
PpsI GAGTC 2 cut(s) 945, 1282
Ppu21I YACGTR 2 cut(s) 485, 624
Psp124BI GAGCTC 1 cut(s) 513
Psp1406I AACGTT 1 cut(s) 440
Psp6I CCWGG 2 cut(s) 279, 763
PspFI CCCAGC 1 cut(s) 1196
PspGI CCWGG 2 cut(s) 279, 763
PspN4I GGNNCC 3 cut(s) 588, 873, 1012
PstI CTGCAG 1 cut(s) 700
PsyI GACNNNGTC 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 701
RsaI GTAC 4 cut(s) 476, 626, 1012, 1244
RsaNI GTAC 4 cut(s) 475, 625, 1011, 1243
SacI GAGCTC 1 cut(s) 513
SacII CCGCGG 1 cut(s) 208
SapI GCTCTTC 1 cut(s) 309
SaqAI TTAA 1 cut(s) 1124
Sau3AI GATC 4 cut(s) 36, 55, 106, 374
SchI GAGTC 2 cut(s) 945, 1283
ScrFI CCNGG 3 cut(s) 154, 281, 765
SduI GDGCHC 1 cut(s) 513
SfaNI GCATC 1 cut(s) 409
SfcI CTRYAG 1 cut(s) 696
Sfr274I CTCGAG 1 cut(s) 455
Sfr303I CCGCGG 1 cut(s) 208
SgrBI CCGCGG 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 455
SmlI CTYRAG 2 cut(s) 455, 534
SmoI CTYRAG 2 cut(s) 455, 534
SnaBI TACGTA 1 cut(s) 624
Sse9I AATT 7 cut(s) 301, 562, 604, 670, 705, 789, 1038
SspI AATATT 1 cut(s) 574
SspMI CTAG 1 cut(s) 1119
SstI GAGCTC 1 cut(s) 513
StyD4I CCNGG 3 cut(s) 152, 279, 763
StyI CCWWGG 2 cut(s) 426, 732
TaaI ACNGT 3 cut(s) 115, 187, 1029
TaiI ACGT 3 cut(s) 443, 487, 626
TaqI TCGA 2 cut(s) 305, 456
TasI AATT 7 cut(s) 301, 562, 604, 670, 705, 789, 1038
TatI WGTACW 1 cut(s) 474
TauI GCSGC 7 cut(s) 87, 90, 207, 210, 326, 329, 1064
TfiI GAWTC 5 cut(s) 266, 530, 662, 811, 825
Tru1I TTAA 1 cut(s) 1124
Tru9I TTAA 1 cut(s) 1124
TseFI GTSAC 1 cut(s) 974
TseI GCWGC 4 cut(s) 422, 695, 698, 1223
Tsp45I GTSAC 1 cut(s) 974
TspDTI ATGAA 5 cut(s) 401, 977, 1240, 1268, 1269
Tth111I GACNNNGTC 1 cut(s) 154
XapI RAATTY 3 cut(s) 301, 562, 670
XhoI CTCGAG 1 cut(s) 455
XspI CTAG 1 cut(s) 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.