Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004574.1

Orthogroup ID

OG0005125

Physical Location & Seq

Genomic Coordinates Forward (+)

148902 .. 153930

Gene Structure 5029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004574.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

atgtgctttgattcccagcgtctggagcttctgatgctatcttggcgcagcgggtggcggctcgtcagcggtgatctgggggcgatccggggctcaggcggtagcccgtctggctgtgctctcgcaggtcactcctttggtgagagttggtacctctggcggtacaatgaccatcaacatctccaatattgttacaacaatcaacccctttcatctctgcttcaacatattacaggtaccatctacctcccaaacatggggaatggcgaatcaacgtataatgattctcatgataatttatggacggatgatgattctcatgatagtttcccacctgaaccaccttcctatgcaggcacttcgatggactctagttctaaacaaaagctaccatctacacgtataggcgacaatttcaactctttggatcaggttattgcttcattgagagaagctggccttgaatcatcaaatttaatacttggtatcgacttcacaaagagcaatgaatggacaggcaaatattcattcaacagaaaaagtcttcatgctatcggtagcacacctaatccttacgagcaagcaatctctataattggccgcactttgtctcctttcgatgaagataatataattccttgttttggatttggcgatgcatcaacacatgatcaaggtgtgttccgcttttatcctgatgatcgatgctgtgttgggttcgaggaagctcttgctcggtatagggagattgttccattcttaaggttatcaggtccaacctcgttttccccaataattgatgcggcaattgacattgttgaaaaaaacaatggacaataccatgttcttgttattatagcagacggacaggttaccagaagccctgataccccacctggaagattcagtgcccaagaacaagcgactgtaaattccatagttgctgctagcaaatatcctctgtcaattatcttggttggagttggggacggaccgtgggatgcaatgcagcaatttgatgataacattcctcaacaagcatttgacaacttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023052 GO:0032446 GO:0032870 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

351

Amino Acids

38.82

Weight (kDa)

4.69

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63970 AT5G63970
fragaria_vesca	FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670 FvH4_1g24670
malus_domestica	MD16G1282700.v1.1
prunus_persica	Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1 Prupe.4G273300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122151
rosa_laevigata	RLG00000018654
rosa_multiflora	Rmu_sc0000805.1_g000043 Rmu_sc0004574.1_g000050
rosa_roxburghii	Rroxscaffold_2G00121990
rosa_rugosa	Rorug02G0236600
rosa_samantha	Rh2AG293400 Rh2BG303800 Rh2CG282100 Rh2DG317300
rosa_wichuraiana	Rw2G023520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	116
Acc65I	GGTACC	2 cut(s)	150, 236
AccB1I	GGYRCC	2 cut(s)	150, 236
AccB7I	CCANNNNNTGG	1 cut(s)	22
AciI	CCGC	8 cut(s)	51, 58, 69, 99, 160, 601, 685, 803
AclWI	GGATC	2 cut(s)	79, 435
AcoI	YGGCCR	1 cut(s)	598
AcsI	RAATTY	2 cut(s)	472, 931
AfaI	GTAC	3 cut(s)	152, 164, 238
AfiI	CCNNNNNNNGG	4 cut(s)	22, 256, 257, 644
AflII	CTTAAG	1 cut(s)	760
AflIII	ACRYGT	1 cut(s)	398
AgsI	TTSAA	5 cut(s)	224, 418, 464, 532, 821
AjnI	CCWGG	1 cut(s)	895
AjuI	GAANNNNNNNTTGG	2 cut(s)	769, 801
AluBI	AGCT	4 cut(s)	28, 388, 455, 728
AluI	AGCT	4 cut(s)	28, 388, 455, 728
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	615
AlwI	GGATC	2 cut(s)	79, 435
AlwNI	CAGNNNCTG	1 cut(s)	22
AoxI	GGCC	2 cut(s)	457, 598
ApeKI	GCWGC	3 cut(s)	48, 944, 1009
ApoI	RAATTY	2 cut(s)	472, 931
Asp718I	GGTACC	2 cut(s)	150, 236
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	2 cut(s)	773, 992
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	83, 152
AsuNHI	GCTAGC	1 cut(s)	947
AvaII	GGWCC	2 cut(s)	773, 992
BaeGI	GKGCMC	1 cut(s)	913
BanI	GGYRCC	2 cut(s)	150, 236
BanII	GRGCYC	1 cut(s)	95
BarI	GAAGNNNNNNTAC	2 cut(s)	871, 903
BbsI	GAAGAC	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	3 cut(s)	60, 931, 1021
BccI	CCATC	4 cut(s)	180, 248, 358, 400
BcgI	CGANNNNNNTGC	2 cut(s)	342, 376
BciT130I	CCWGG	1 cut(s)	897
BclI	TGATCA	1 cut(s)	670
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	1 cut(s)	615
BfaI	CTAG	3 cut(s)	372, 948, 1054
BfrI	CTTAAG	1 cut(s)	760
BfuAI	ACCTGC	1 cut(s)	116
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	6 cut(s)	49, 59, 601, 804, 945, 1010
BlsI	GCNGC	6 cut(s)	50, 60, 602, 805, 946, 1011
Bme1390I	CCNGG	2 cut(s)	89, 897
Bme18I	GGWCC	2 cut(s)	773, 992
BmgT120I	GGNCC	2 cut(s)	773, 992
BmiI	GGNNCC	2 cut(s)	152, 238
BmrFI	CCNGG	2 cut(s)	89, 897
BmsI	GCATC	6 cut(s)	24, 646, 668, 695, 790, 991
BmtI	GCTAGC	1 cut(s)	951
BpiI	GAAGAC	1 cut(s)	536
BpmI	CTGGAG	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	89
Bsa29I	ATCGAT	1 cut(s)	703
BsaAI	YACGTR	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	88, 995
BsaXI	ACNNNNNCTCC	2 cut(s)	595, 625
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 256, 257, 644
Bse3DI	GCAATG	2 cut(s)	511, 1011
BseBI	CCWGG	1 cut(s)	897
BseCI	ATCGAT	1 cut(s)	703
BseDI	CCNNGG	2 cut(s)	88, 995
BseGI	GGATG	2 cut(s)	313, 1006
BseLI	CCNNNNNNNGG	4 cut(s)	22, 256, 257, 644
BseMI	GCAATG	2 cut(s)	511, 1011
BseMII	CTCAG	1 cut(s)	108
BseSI	GKGCMC	1 cut(s)	913
BseXI	GCAGC	3 cut(s)	60, 931, 1021
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	2 cut(s)	459, 600
BshNI	GGYRCC	2 cut(s)	150, 236
BshVI	ATCGAT	1 cut(s)	703
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	88
BslFI	GGGAC	1 cut(s)	1001
BslI	CCNNNNNNNGG	4 cut(s)	22, 256, 257, 644
BsmAI	GTCTC	1 cut(s)	615
BsmFI	GGGAC	1 cut(s)	1001
BsnI	GGCC	2 cut(s)	459, 600
Bsp1286I	GDGCHC	3 cut(s)	95, 121, 913
Bsp143I	GATC	5 cut(s)	73, 84, 427, 670, 700
BspACI	CCGC	8 cut(s)	51, 58, 69, 99, 160, 601, 685, 803
BspANI	GGCC	2 cut(s)	459, 600
BspCNI	CTCAG	1 cut(s)	107
BspDI	ATCGAT	1 cut(s)	703
BspHI	TCATGA	2 cut(s)	289, 319
BspLI	GGNNCC	2 cut(s)	152, 238
BspMI	ACCTGC	1 cut(s)	116
BspOI	GCTAGC	1 cut(s)	951
BspPI	GGATC	2 cut(s)	79, 435
BspT107I	GGYRCC	2 cut(s)	150, 236
BspTI	CTTAAG	1 cut(s)	760
BsrDI	GCAATG	2 cut(s)	511, 1011
BssECI	CCNNGG	2 cut(s)	88, 995
BssMI	GATC	5 cut(s)	73, 84, 427, 670, 700
Bst2UI	CCWGG	1 cut(s)	897
Bst4CI	ACNGT	2 cut(s)	928, 996
BstAFI	CTTAAG	1 cut(s)	760
BstBAI	YACGTR	1 cut(s)	401
BstC8I	GCNNGC	4 cut(s)	355, 457, 582, 949
BstDEI	CTNAG	1 cut(s)	94
BstDSI	CCRYGG	1 cut(s)	995
BstEII	GGTNACC	1 cut(s)	871
BstF5I	GGATG	2 cut(s)	313, 1006
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	5 cut(s)	76, 87, 430, 673, 703
BstMAI	GTCTC	1 cut(s)	615
BstMBI	GATC	5 cut(s)	73, 84, 427, 670, 700
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 34, 43, 111
BstNI	CCWGG	1 cut(s)	897
BstPI	GGTNACC	1 cut(s)	871
BstSCI	CCNGG	2 cut(s)	87, 895
BstSLI	GKGCMC	1 cut(s)	913
BstV1I	GCAGC	3 cut(s)	60, 931, 1021
BstV2I	GAAGAC	1 cut(s)	536
Bsu15I	ATCGAT	1 cut(s)	703
BsuRI	GGCC	2 cut(s)	459, 600
BsuTUI	ATCGAT	1 cut(s)	703
BtgI	CCRYGG	1 cut(s)	995
BtgZI	GCGATG	1 cut(s)	669
BtsCI	GGATG	2 cut(s)	313, 1006
BtsIMutI	CAGTG	1 cut(s)	913
BveI	ACCTGC	1 cut(s)	116
Cac8I	GCNNGC	4 cut(s)	355, 457, 582, 949
CaiI	CAGNNNCTG	1 cut(s)	22
CciI	TCATGA	2 cut(s)	289, 319
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	773, 992
ClaI	ATCGAT	1 cut(s)	703
CpoI	CGGWCCG	1 cut(s)	992
CseI	GACGC	1 cut(s)	8
Csp6I	GTAC	3 cut(s)	151, 163, 237
CspI	CGGWCCG	1 cut(s)	992
CviAII	CATG	6 cut(s)	256, 290, 320, 548, 668, 842
CviQI	GTAC	3 cut(s)	151, 163, 237
DdeI	CTNAG	1 cut(s)	94
DpnI	GATC	5 cut(s)	75, 86, 429, 672, 702
DpnII	GATC	5 cut(s)	73, 84, 427, 670, 700
EaeI	YGGCCR	1 cut(s)	598
Eco24I	GRGCYC	1 cut(s)	95
Eco47I	GGWCC	2 cut(s)	773, 992
Eco91I	GGTNACC	1 cut(s)	871
EcoO65I	GGTNACC	1 cut(s)	871
EcoRII	CCWGG	1 cut(s)	895
EcoT22I	ATGCAT	1 cut(s)	661
EcoT38I	GRGCYC	1 cut(s)	95
FaeI	CATG	6 cut(s)	259, 293, 323, 551, 671, 845
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FaqI	GGGAC	1 cut(s)	1001
FatI	CATG	6 cut(s)	255, 289, 319, 547, 667, 841
FauI	CCCGC	1 cut(s)	44
FbaI	TGATCA	1 cut(s)	670
Fnu4HI	GCNGC	6 cut(s)	49, 59, 601, 804, 945, 1010
FokI	GGATG	2 cut(s)	320, 1013
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	6 cut(s)	49, 59, 601, 804, 945, 1010
FspBI	CTAG	3 cut(s)	372, 948, 1054
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	6 cut(s)	49, 59, 601, 804, 945, 1010
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	459, 600
HapII	CCGG	1 cut(s)	88
HgaI	GACGC	1 cut(s)	8
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	6 cut(s)	259, 293, 323, 551, 671, 845
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	7 cut(s)	11, 269, 284, 314, 368, 464, 903
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	2 cut(s)	83, 152
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	4 cut(s)	23, 290, 320, 695
HpyAV	CCTTC	1 cut(s)	354
HpyCH4III	ACNGT	2 cut(s)	928, 996
HpyCH4IV	ACGT	2 cut(s)	275, 400
HpyCH4V	TGCA	4 cut(s)	353, 659, 1004, 1009
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 34, 43, 111
HpyF3I	CTNAG	1 cut(s)	94
HpySE526I	ACGT	2 cut(s)	275, 400
Hsp92II	CATG	6 cut(s)	259, 293, 323, 551, 671, 845
HspAI	GCGC	1 cut(s)	46
KpnI	GGTACC	2 cut(s)	154, 240
Ksp22I	TGATCA	1 cut(s)	670
Kzo9I	GATC	5 cut(s)	73, 84, 427, 670, 700
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	3 cut(s)	60, 931, 1021
LweI	GCATC	6 cut(s)	24, 646, 668, 695, 790, 991
MaeI	CTAG	3 cut(s)	372, 948, 1054
MaeII	ACGT	2 cut(s)	275, 400
MaeIII	GTNAC	3 cut(s)	128, 191, 871
MalI	GATC	5 cut(s)	75, 86, 429, 672, 702
MboI	GATC	5 cut(s)	73, 84, 427, 670, 700
MboII	GAAGA	3 cut(s)	536, 635, 912
MfeI	CAATTG	1 cut(s)	807
MhlI	GDGCHC	3 cut(s)	95, 121, 913
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	2 cut(s)	800, 958
MnlI	CCTC	6 cut(s)	164, 257, 715, 790, 969, 1041
Mph1103I	ATGCAT	1 cut(s)	661
MseI	TTAA	2 cut(s)	476, 761
MslI	CAYNNNNRTG	1 cut(s)	362
MspA1I	CMGCKG	2 cut(s)	51, 69
MspCI	CTTAAG	1 cut(s)	760
MspI	CCGG	1 cut(s)	88
MspR9I	CCNGG	2 cut(s)	89, 897
MunI	CAATTG	1 cut(s)	807
MvaI	CCWGG	1 cut(s)	897
MwoI	GCNNNNNNNGC	4 cut(s)	25, 34, 43, 111
NciI	CCSGG	1 cut(s)	89
NdeII	GATC	5 cut(s)	73, 84, 427, 670, 700
NheI	GCTAGC	1 cut(s)	947
NlaIII	CATG	6 cut(s)	259, 293, 323, 551, 671, 845
NlaIV	GGNNCC	2 cut(s)	152, 238
NmuCI	GTSAC	1 cut(s)	128
NsiI	ATGCAT	1 cut(s)	661
PagI	TCATGA	2 cut(s)	289, 319
PfeI	GAWTC	6 cut(s)	11, 269, 284, 314, 464, 903
PflMI	CCANNNNNTGG	1 cut(s)	22
PkrI	GCNGC	6 cut(s)	50, 60, 602, 805, 946, 1011
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
Ppu21I	YACGTR	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	895
PspEI	GGTNACC	1 cut(s)	871
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	895
PspN4I	GGNNCC	2 cut(s)	152, 238
PspPI	GGNCC	2 cut(s)	773, 992
PstNI	CAGNNNCTG	1 cut(s)	22
RsaI	GTAC	3 cut(s)	152, 164, 238
RsaNI	GTAC	3 cut(s)	151, 163, 237
RseI	CAYNNNNRTG	1 cut(s)	362
Rsr2I	CGGWCCG	1 cut(s)	992
RsrII	CGGWCCG	1 cut(s)	992
SaqAI	TTAA	2 cut(s)	476, 761
SatI	GCNGC	6 cut(s)	49, 59, 601, 804, 945, 1010
Sau3AI	GATC	5 cut(s)	73, 84, 427, 670, 700
Sau96I	GGNCC	2 cut(s)	773, 992
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	89, 897
SduI	GDGCHC	3 cut(s)	95, 121, 913
SfaNI	GCATC	6 cut(s)	24, 646, 668, 695, 790, 991
SinI	GGWCC	2 cut(s)	773, 992
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	760
SmoI	CTYRAG	1 cut(s)	760
SsiI	CCGC	8 cut(s)	51, 58, 69, 99, 160, 601, 685, 803
SspI	AATATT	2 cut(s)	188, 524
SspMI	CTAG	3 cut(s)	372, 948, 1054
StyD4I	CCNGG	2 cut(s)	87, 895
TaaI	ACNGT	2 cut(s)	928, 996
TaiI	ACGT	2 cut(s)	278, 403
TaqI	TCGA	5 cut(s)	362, 489, 618, 703, 720
TauI	GCSGC	3 cut(s)	61, 603, 806
TfiI	GAWTC	6 cut(s)	11, 269, 284, 314, 464, 903
Tru1I	TTAA	2 cut(s)	476, 761
Tru9I	TTAA	2 cut(s)	476, 761
TscAI	CASTG	1 cut(s)	913
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	3 cut(s)	48, 944, 1009
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	6 cut(s)	201, 432, 516, 522, 536, 636
TspGWI	ACGGA	3 cut(s)	320, 879, 1005
TspRI	CASTG	1 cut(s)	913
Van91I	CCANNNNNTGG	1 cut(s)	22
Vha464I	CTTAAG	1 cut(s)	760
VpaK11BI	GGWCC	2 cut(s)	773, 992
XapI	RAATTY	2 cut(s)	472, 931
XspI	CTAG	3 cut(s)	372, 948, 1054
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.