AT5G64480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014589
Physical Location & Seq
Forward (+)
25778030 .. 25778992
963 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G64480.2

Sequence Viewer

Length: 555 bp
ATGTCGGTGAGATTACTTCATCTTCTTCCCCAAAACAATTCCTTTTCTCGGAATCTCAAATTTCACCATCTGTTGACCCGACCCGTAACCCGAATCCAGTGCATAAGGAGAGACGAGGAAGACGATGACATCATCAACAAGATGAGGATTAGGAGGCCGAAGAGGAAGAAGAAGATTATGACCGATTCGGAGCTAGCGACAGATTTGGCTAGAGAAATCGGGAAAGCGAACACAGTCGCGGAGCAGAGAAGAGAAGCGATGAAGAAGAGCGGTGAGATTCTGTGGGCAGAGTTTTGTAGGCATATGGATTTGAAAGAAGATGAGATGAAGATAAAATGGAACAAGATTGGAGAAGAAGAGAAATTGGTTCTGGTTAGAGAGTTTGTTGATGAATGGGCTGGTGATTTTCAACCTTTATCTATTACATCTGTTAAAGAAATGGTTGACCAAGAGTGTTTAGATTCTGACAAAACAATCGAATCTTCTTCTTCTTCGTCTATGTCTTCGTTTTCTGGCTTGTTTCCTGGATTGAAGAGAATCATTGGGTTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

21.49

Weight (kDa)

7.73

Isoelectric Point (pI)

60.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7026 PF22950 111 - 160 6.8e-23 Domain of unknown function (DUF7026)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014589)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64480 AT5G64480
fragaria_vesca FvH4_2g11070
malus_domestica MD10G1057800.v1.1
prunus_persica Prupe.8G076600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0269271
rosa_laevigata RLG00000013863 RLG00000013866
rosa_multiflora Rmu_ssc0000474.1_g000042 Rmu_ssc0000474.1_g000043
rosa_roxburghii Rroxscaffold_7G00198890
rosa_rugosa Rorug06G0047300
rosa_samantha Rh6AG166800 Rh6BG172400 Rh6CG166200 Rh6DG157900
rosa_wichuraiana Rw6G014420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 270
AccII CGCG 1 cut(s) 239
AciI CCGC 2 cut(s) 239, 270
AcsI RAATTY 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 3 cut(s) 313, 410, 532
AjnI CCWGG 1 cut(s) 523
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 105
AoxI GGCC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 59
AsuHPI GGTGA 4 cut(s) 19, 56, 284, 413
AsuNHI GCTAGC 1 cut(s) 193
BbsI GAAGAC 2 cut(s) 126, 495
BccI CCATC 1 cut(s) 75
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BciT130I CCWGG 1 cut(s) 525
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 2 cut(s) 194, 210
Bme1390I CCNGG 1 cut(s) 525
BmrFI CCNGG 1 cut(s) 525
BmtI GCTAGC 1 cut(s) 197
BpiI GAAGAC 2 cut(s) 126, 495
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 97
BseBI CCWGG 1 cut(s) 525
BseLI CCNNNNNNNGG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 239
BshFI GGCC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 105
BsmBI CGTCTC 1 cut(s) 105
BsnI GGCC 1 cut(s) 157
BspACI CCGC 2 cut(s) 239, 270
BspANI GGCC 1 cut(s) 157
BspFNI CGCG 1 cut(s) 239
BspOI GCTAGC 1 cut(s) 197
BspQI GCTCTTC 1 cut(s) 260
BsrBI CCGCTC 1 cut(s) 270
BsrI ACTGG 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 5 cut(s) 155, 244, 260, 351, 527
BstC8I GCNNGC 1 cut(s) 195
BstFNI CGCG 1 cut(s) 239
BstMAI GTCTC 1 cut(s) 105
BstNI CCWGG 1 cut(s) 525
BstSCI CCNGG 1 cut(s) 523
BstUI CGCG 1 cut(s) 239
BstV2I GAAGAC 2 cut(s) 126, 495
BsuRI GGCC 1 cut(s) 157
BtgZI GCGATG 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 195
CviJI RGCY 5 cut(s) 157, 193, 209, 398, 516
CviKI_1 RGCY 5 cut(s) 157, 193, 209, 398, 516
Eam1104I CTCTTC 5 cut(s) 155, 244, 260, 351, 527
EarI CTCTTC 5 cut(s) 155, 244, 260, 351, 527
EcoRII CCWGG 1 cut(s) 523
Esp3I CGTCTC 1 cut(s) 105
FaiI YATR 5 cut(s) 104, 179, 303, 305, 500
FauNDI CATATG 1 cut(s) 303
FspBI CTAG 2 cut(s) 194, 210
HaeIII GGCC 1 cut(s) 157
HincII GTYRAC 2 cut(s) 75, 445
HindII GTYRAC 2 cut(s) 75, 445
HinfI GANTC 7 cut(s) 52, 93, 185, 277, 461, 479, 537
HphI GGTGA 4 cut(s) 19, 56, 284, 413
Hpy166II GTNNAC 2 cut(s) 75, 445
Hpy188I TCNGA 3 cut(s) 51, 190, 466
Hpy188III TCNNGA 1 cut(s) 220
Hpy8I GTNNAC 2 cut(s) 75, 445
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 1 cut(s) 102
LguI GCTCTTC 1 cut(s) 260
LmnI GCTCC 2 cut(s) 190, 241
LpnPI CCDG 6 cut(s) 110, 356, 384, 498, 510, 537
MaeI CTAG 2 cut(s) 194, 210
MaeIII GTNAC 1 cut(s) 85
MbiI CCGCTC 1 cut(s) 270
MluCI AATT 3 cut(s) 37, 59, 362
MnlI CCTC 4 cut(s) 109, 138, 147, 156
MseI TTAA 1 cut(s) 432
MspR9I CCNGG 1 cut(s) 525
MvaI CCWGG 1 cut(s) 525
MvnI CGCG 1 cut(s) 239
NdeI CATATG 1 cut(s) 303
NheI GCTAGC 1 cut(s) 193
PciSI GCTCTTC 1 cut(s) 260
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 194
PfeI GAWTC 7 cut(s) 52, 93, 185, 277, 461, 479, 537
PfoI TCCNGGA 1 cut(s) 523
Psp6I CCWGG 1 cut(s) 523
PspGI CCWGG 1 cut(s) 523
SapI GCTCTTC 1 cut(s) 260
SaqAI TTAA 1 cut(s) 432
ScrFI CCNGG 1 cut(s) 525
SetI ASST 2 cut(s) 195, 415
Sse9I AATT 3 cut(s) 37, 59, 362
SsiI CCGC 2 cut(s) 239, 270
SspMI CTAG 2 cut(s) 194, 210
StyD4I CCNGG 1 cut(s) 523
TaaI ACNGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 477
TaqII GACCGA 1 cut(s) 197
TasI AATT 3 cut(s) 37, 59, 362
TfiI GAWTC 7 cut(s) 52, 93, 185, 277, 461, 479, 537
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 1 cut(s) 104
TspDTI ATGAA 4 cut(s) 8, 275, 341, 405
TspRI CASTG 1 cut(s) 104
XapI RAATTY 1 cut(s) 59
XspI CTAG 2 cut(s) 194, 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.