RLG00000013863

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0014589
Physical Location & Seq
Forward (+)
43133290 .. 43134724
1435 bp
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UTR
Exon/CDS
Intron
RLM00000013863

Sequence Viewer

Length: 417 bp
ATGACCACCCTTTTCGCGCAGAGAGACGAAGCCATGAACAAGAGCAGAGAGCTTCTCTTCACAGAGTTGTGCCAATTACTGGATTCAAAACCAGACGAGGTCAAGAAAAAAATGGAGGAAAGCGGGTTTTGGTTAAAGGCTTTGTTTCAGAGTGGGGTGAATTTTCACCCAATGTCTGCAAAATCTGTTCAAGACTTGGTCGAGGAGCACATGATCTTGGCGCCGGTTTGTTTGAGGAAGATCAGCGGGGGAGGACAGCGACTAGGTGCTTCGCCGCGTCGGGCTGCTTCATGCTTGACTGGGTTCTGTGAGGCGGTGATTGCCTTCGATCTCGGTTTGGTGCTGCGCTGTTTTAGCGAAGGTGATCGATCCCGGGGTACTGTGTGCTGGGAGACGTTGCTTCATTGTGTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.34

Weight (kDa)

6.81

Isoelectric Point (pI)

53.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7026 PF22950 8 - 39 2.3e-12 Domain of unknown function (DUF7026)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014589)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64480 AT5G64480
fragaria_vesca FvH4_2g11070
malus_domestica MD10G1057800.v1.1
prunus_persica Prupe.8G076600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0269271
rosa_laevigata RLG00000013863 RLG00000013866
rosa_multiflora Rmu_ssc0000474.1_g000042 Rmu_ssc0000474.1_g000043
rosa_roxburghii Rroxscaffold_7G00198890
rosa_rugosa Rorug06G0047300
rosa_samantha Rh6AG166800 Rh6BG172400 Rh6CG166200 Rh6DG157900
rosa_wichuraiana Rw6G014420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 220
AccB7I CCANNNNNTGG 1 cut(s) 79
AccII CGCG 2 cut(s) 17, 277
AciI CCGC 4 cut(s) 123, 246, 275, 314
AclWI GGATC 1 cut(s) 363
AcsI RAATTY 1 cut(s) 160
AcyI GRCGYC 1 cut(s) 221
AfaI GTAC 1 cut(s) 379
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 2 cut(s) 87, 191
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 2 cut(s) 18, 386
AlwI GGATC 1 cut(s) 363
Ama87I CYCGRG 1 cut(s) 372
ApeKI GCWGC 2 cut(s) 284, 343
ApoI RAATTY 1 cut(s) 160
AspLEI GCGC 3 cut(s) 19, 223, 348
AsuC2I CCSGG 2 cut(s) 373, 374
AsuHPI GGTGA 4 cut(s) 158, 169, 328, 374
AvaI CYCGRG 1 cut(s) 372
BanI GGYRCC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 271, 330
BcnI CCSGG 2 cut(s) 373, 374
BcoDI GTCTC 2 cut(s) 18, 386
BfaI CTAG 1 cut(s) 263
BfoI RGCGCY 1 cut(s) 224
BisI GCNGC 3 cut(s) 275, 285, 344
BlsI GCNGC 3 cut(s) 276, 286, 345
Bme1390I CCNGG 2 cut(s) 373, 374
BmeT110I CYCGRG 1 cut(s) 372
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 2 cut(s) 373, 374
BmrI ACTGGG 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 309
BplI GAGNNNNNCTC 2 cut(s) 39, 71
BpuMI CCSGG 2 cut(s) 373, 374
Bsa29I ATCGAT 1 cut(s) 367
BsaHI GRCGYC 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 372, 373
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 223
Bse1I ACTGG 2 cut(s) 84, 304
BseCI ATCGAT 1 cut(s) 367
BseDI CCNNGG 2 cut(s) 372, 373
BseLI CCNNNNNNNGG 1 cut(s) 79
BseNI ACTGG 2 cut(s) 84, 304
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 2 cut(s) 271, 330
BseYI CCCAGC 1 cut(s) 387
Bsh1236I CGCG 2 cut(s) 17, 277
BshNI GGYRCC 1 cut(s) 220
BshVI ATCGAT 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 2 cut(s) 224, 373
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 18, 386
BsmBI CGTCTC 2 cut(s) 18, 386
BsoBI CYCGRG 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 5 cut(s) 213, 240, 328, 364, 368
BspACI CCGC 4 cut(s) 123, 246, 275, 314
BspDI ATCGAT 1 cut(s) 367
BspFNI CGCG 2 cut(s) 17, 277
BspLI GGNNCC 1 cut(s) 222
BspPI GGATC 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 223
BsrI ACTGG 2 cut(s) 84, 304
BssAI RCCGGY 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 372, 373
BssMI GATC 5 cut(s) 213, 240, 328, 364, 368
BssNI GRCGYC 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 221
BstFNI CGCG 2 cut(s) 17, 277
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 3 cut(s) 19, 223, 348
BstKTI GATC 5 cut(s) 216, 243, 331, 367, 371
BstMAI GTCTC 2 cut(s) 18, 386
BstMBI GATC 5 cut(s) 213, 240, 328, 364, 368
BstMWI GCNNNNNNNGC 2 cut(s) 320, 354
BstSCI CCNGG 2 cut(s) 371, 372
BstUI CGCG 2 cut(s) 17, 277
BstV1I GCAGC 2 cut(s) 271, 330
Bsu15I ATCGAT 1 cut(s) 367
BsuTUI ATCGAT 1 cut(s) 367
CfoI GCGC 3 cut(s) 19, 223, 348
Cfr10I RCCGGY 1 cut(s) 223
Cfr9I CCCGGG 1 cut(s) 372
ClaI ATCGAT 1 cut(s) 367
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 378
CviAII CATG 3 cut(s) 34, 211, 291
CviJI RGCY 5 cut(s) 32, 52, 140, 284, 413
CviKI_1 RGCY 5 cut(s) 32, 52, 140, 284, 413
CviQI GTAC 1 cut(s) 378
DinI GGCGCC 1 cut(s) 222
DpnI GATC 5 cut(s) 215, 242, 330, 366, 370
DpnII GATC 5 cut(s) 213, 240, 328, 364, 368
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 372
EgeI GGCGCC 1 cut(s) 222
EheI GGCGCC 1 cut(s) 222
Esp3I CGTCTC 2 cut(s) 18, 386
FaeI CATG 3 cut(s) 37, 214, 294
FaiI YATR 3 cut(s) 35, 212, 292
FatI CATG 3 cut(s) 33, 210, 290
FauI CCCGC 2 cut(s) 116, 239
Fnu4HI GCNGC 3 cut(s) 275, 285, 344
Fsp4HI GCNGC 3 cut(s) 275, 285, 344
FspBI CTAG 1 cut(s) 263
GlaI GCGC 3 cut(s) 18, 222, 347
GluI GCNGC 3 cut(s) 275, 285, 344
GsaI CCCAGC 1 cut(s) 391
HaeII RGCGCY 1 cut(s) 224
HapII CCGG 2 cut(s) 224, 373
HgaI GACGC 1 cut(s) 266
HhaI GCGC 3 cut(s) 19, 223, 348
Hin1I GRCGYC 1 cut(s) 221
Hin1II CATG 3 cut(s) 37, 214, 294
Hin6I GCGC 3 cut(s) 17, 221, 346
HinP1I GCGC 3 cut(s) 17, 221, 346
HinfI GANTC 1 cut(s) 83
HpaII CCGG 2 cut(s) 224, 373
HphI GGTGA 4 cut(s) 158, 169, 328, 374
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 2 cut(s) 103, 191
Hpy99I CGWCG 1 cut(s) 282
HpyAV CCTTC 2 cut(s) 334, 353
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 1 cut(s) 395
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 354
HpySE526I ACGT 1 cut(s) 395
Hsp92I GRCGYC 1 cut(s) 221
Hsp92II CATG 3 cut(s) 37, 214, 294
HspAI GCGC 3 cut(s) 17, 221, 346
KasI GGCGCC 1 cut(s) 220
Kzo9I GATC 5 cut(s) 213, 240, 328, 364, 368
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 6 cut(s) 65, 105, 237, 285, 373, 386
Lsp1109I GCAGC 2 cut(s) 271, 330
MaeI CTAG 1 cut(s) 263
MaeII ACGT 1 cut(s) 395
MalI GATC 5 cut(s) 215, 242, 330, 366, 370
MboI GATC 5 cut(s) 213, 240, 328, 364, 368
MboII GAAGA 2 cut(s) 49, 250
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 2 cut(s) 74, 160
Mly113I GGCGCC 1 cut(s) 221
MnlI CCTC 6 cut(s) 91, 109, 196, 228, 245, 304
MseI TTAA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 246
MspI CCGG 2 cut(s) 224, 373
MspR9I CCNGG 2 cut(s) 373, 374
MvnI CGCG 2 cut(s) 17, 277
MwoI GCNNNNNNNGC 2 cut(s) 320, 354
NarI GGCGCC 1 cut(s) 221
NciI CCSGG 2 cut(s) 373, 374
NdeII GATC 5 cut(s) 213, 240, 328, 364, 368
NlaIII CATG 3 cut(s) 37, 214, 294
NlaIV GGNNCC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 83
PflFI GACNNNGTC 2 cut(s) 98, 197
PflMI CCANNNNNTGG 1 cut(s) 79
PkrI GCNGC 3 cut(s) 276, 286, 345
PluTI GGCGCC 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 387
PspN4I GGNNCC 1 cut(s) 222
PsyI GACNNNGTC 2 cut(s) 98, 197
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 3 cut(s) 275, 285, 344
Sau3AI GATC 5 cut(s) 213, 240, 328, 364, 368
ScrFI CCNGG 2 cut(s) 373, 374
SduI GDGCHC 1 cut(s) 210
SetI ASST 5 cut(s) 54, 102, 268, 364, 398
SfoI GGCGCC 1 cut(s) 222
SmaI CCCGGG 1 cut(s) 374
Sse9I AATT 2 cut(s) 74, 160
SsiI CCGC 4 cut(s) 123, 246, 275, 314
SspDI GGCGCC 1 cut(s) 220
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 2 cut(s) 371, 372
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 1 cut(s) 398
TaqI TCGA 3 cut(s) 201, 327, 367
TasI AATT 2 cut(s) 74, 160
TauI GCSGC 1 cut(s) 277
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TseI GCWGC 2 cut(s) 284, 343
TspDTI ATGAA 3 cut(s) 50, 279, 392
TspMI CCCGGG 1 cut(s) 372
Tth111I GACNNNGTC 2 cut(s) 98, 197
Van91I CCANNNNNTGG 1 cut(s) 79
XapI RAATTY 1 cut(s) 160
XmaI CCCGGG 1 cut(s) 372
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.