MD10G1057800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0014589
Physical Location & Seq
Forward (+)
7838912 .. 7839292
381 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1057800.v1.1.491

Sequence Viewer

Length: 381 bp
ATGATGAGTGACGCGGAGCTTGCGTCGGATTTGTCCAAGATGAACAGTCTCTTGGCGCAGAGGGAGGAGGCCATGGACAAGAGCAGGCAGCTCCTCTTCGCGGAGCTCTGCCAATTCGTGGGTTCGAATTCGGAGGAGGTGAAGAAGAAATGGGGGAAGTTGGAGGAGGAGGAGAAGATGGTTTTGGTGAAAGGGTTTGTTTCGGAGTGGGGTGTCAATTTCCACCCGCTGTCTGCAAAGTCCGTAAAGCAGTTGGTGGAGGAACATGTCCAGGAACAAAACCCTAAACCCGCGAATTCGAAATCGTCTTCTTCTTCTGCTGTTTCTGTTTTGTTTCCCGGTTTCAAGAGAATGATGGGCTTCTCTGACGACGACAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.13

Weight (kDa)

5.46

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7026 PF22950 21 - 70 6e-26 Domain of unknown function (DUF7026)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014589)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64480 AT5G64480
fragaria_vesca FvH4_2g11070
malus_domestica MD10G1057800.v1.1
prunus_persica Prupe.8G076600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0269271
rosa_laevigata RLG00000013863 RLG00000013866
rosa_multiflora Rmu_ssc0000474.1_g000042 Rmu_ssc0000474.1_g000043
rosa_roxburghii Rroxscaffold_7G00198890
rosa_rugosa Rorug06G0047300
rosa_samantha Rh6AG166800 Rh6BG172400 Rh6CG166200 Rh6DG157900
rosa_wichuraiana Rw6G014420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 118
AccII CGCG 3 cut(s) 14, 101, 293
AciI CCGC 4 cut(s) 14, 101, 227, 291
AcsI RAATTY 2 cut(s) 127, 295
AfiI CCNNNNNNNGG 2 cut(s) 100, 118
AflIII ACRYGT 1 cut(s) 265
AgsI TTSAA 1 cut(s) 346
AjnI CCWGG 1 cut(s) 270
AjuI GAANNNNNNNTTGG 4 cut(s) 35, 67, 167, 199
AluBI AGCT 3 cut(s) 19, 91, 106
AluI AGCT 3 cut(s) 19, 91, 106
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 53
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 2 cut(s) 127, 295
AspLEI GCGC 1 cut(s) 58
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 2 cut(s) 151, 199
AsuII TTCGAA 2 cut(s) 125, 299
BanII GRGCYC 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 100
BccI CCATC 2 cut(s) 172, 349
BciT130I CCWGG 1 cut(s) 272
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 1 cut(s) 53
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 2 cut(s) 272, 339
BmrFI CCNGG 2 cut(s) 272, 339
BpiI GAAGAC 1 cut(s) 300
Bpu14I TTCGAA 2 cut(s) 125, 299
BpuMI CCSGG 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 118
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 72
BseLI CCNNNNNNNGG 2 cut(s) 100, 118
BseRI GAGGAG 6 cut(s) 80, 83, 149, 179, 182, 185
BseXI GCAGC 1 cut(s) 100
Bsh1236I CGCG 3 cut(s) 14, 101, 293
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 1 cut(s) 339
BslI CCNNNNNNNGG 2 cut(s) 100, 118
BsmAI GTCTC 1 cut(s) 53
BsnI GGCC 1 cut(s) 71
Bsp119I TTCGAA 2 cut(s) 125, 299
Bsp1286I GDGCHC 1 cut(s) 108
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 4 cut(s) 14, 101, 227, 291
BspANI GGCC 1 cut(s) 71
BspFNI CGCG 3 cut(s) 14, 101, 293
BspT104I TTCGAA 2 cut(s) 125, 299
BssECI CCNNGG 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 101
BstBI TTCGAA 2 cut(s) 125, 299
BstC8I GCNNGC 2 cut(s) 21, 86
BstDSI CCRYGG 1 cut(s) 72
BstFNI CGCG 3 cut(s) 14, 101, 293
BstHHI GCGC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 2 cut(s) 270, 337
BstUI CGCG 3 cut(s) 14, 101, 293
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 300
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 1 cut(s) 72
Cac8I GCNNGC 2 cut(s) 21, 86
CfoI GCGC 1 cut(s) 58
CseI GACGC 2 cut(s) 12, 20
CviAII CATG 2 cut(s) 73, 266
CviJI RGCY 5 cut(s) 19, 71, 91, 106, 360
CviKI_1 RGCY 5 cut(s) 19, 71, 91, 106, 360
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Ecl136II GAGCTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 106
EcoRI GAATTC 2 cut(s) 127, 295
EcoRII CCWGG 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 2 cut(s) 76, 269
FaiI YATR 2 cut(s) 74, 267
FatI CATG 2 cut(s) 72, 265
FauI CCCGC 2 cut(s) 234, 298
Fnu4HI GCNGC 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 89
GlaI GCGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 89
HaeIII GGCC 1 cut(s) 71
HapII CCGG 1 cut(s) 339
HgaI GACGC 2 cut(s) 12, 20
HhaI GCGC 1 cut(s) 58
Hin1II CATG 2 cut(s) 76, 269
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HpaII CCGG 1 cut(s) 339
HphI GGTGA 2 cut(s) 151, 199
Hpy188I TCNGA 4 cut(s) 28, 133, 205, 367
Hpy188III TCNNGA 1 cut(s) 346
Hpy99I CGWCG 2 cut(s) 28, 374
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
Hsp92II CATG 2 cut(s) 76, 269
HspAI GCGC 1 cut(s) 56
LmnI GCTCC 3 cut(s) 16, 96, 103
LpnPI CCDG 4 cut(s) 70, 257, 284, 352
Lsp1109I GCAGC 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 8
MboII GAAGA 7 cut(s) 88, 154, 157, 187, 300, 303, 306
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 4 cut(s) 113, 127, 217, 295
MmeI TCCRAC 2 cut(s) 6, 141
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 2 cut(s) 272, 339
MvaI CCWGG 1 cut(s) 272
MvnI CGCG 3 cut(s) 14, 101, 293
MwoI GCNNNNNNNGC 1 cut(s) 20
NciI CCSGG 1 cut(s) 339
NcoI CCATGG 1 cut(s) 72
NlaIII CATG 2 cut(s) 76, 269
NmuCI GTSAC 1 cut(s) 8
NspI RCATGY 1 cut(s) 269
NspV TTCGAA 2 cut(s) 125, 299
PciI ACATGT 1 cut(s) 265
PflMI CCANNNNNTGG 1 cut(s) 118
PfoI TCCNGGA 1 cut(s) 270
PkrI GCNGC 1 cut(s) 90
PscI ACATGT 1 cut(s) 265
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
SacI GAGCTC 1 cut(s) 108
SatI GCNGC 1 cut(s) 89
ScrFI CCNGG 2 cut(s) 272, 339
SduI GDGCHC 1 cut(s) 108
SetI ASST 4 cut(s) 21, 93, 108, 141
SfuI TTCGAA 2 cut(s) 125, 299
Sse9I AATT 4 cut(s) 113, 127, 217, 295
SsiI CCGC 4 cut(s) 14, 101, 227, 291
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 270, 337
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 47
TaqI TCGA 2 cut(s) 125, 299
TasI AATT 4 cut(s) 113, 127, 217, 295
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 56
TspGWI ACGGA 1 cut(s) 232
Van91I CCANNNNNTGG 1 cut(s) 118
XapI RAATTY 2 cut(s) 127, 295
XceI RCATGY 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.