Prupe.8G076600_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
11099567 .. 11100058
492 bp
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UTR
Exon/CDS
Intron
Prupe.8G076600.1

Sequence Viewer

Length: 492 bp
ATGGCACTAAGAATGAATCTCCTTTCCCCAAAAATCCCCAAACAACCTCCAAAATTCCACACTAATTCCTACCCCTCCATAACCCGTTTCAACACCAGACCCAAAACCCAAATAATAATCCACTGCAACAACAAAAACATCAGTGATGCAGAGCTTGCATCAGATTTGTCAAAGATGAACACCCTTTTCATGCAGAGAGAAGAGGCCATGAAGAAGAGCAGAGAGCTTCTCTTCACAGAGCTGTGCCAGTACCTCAATTCAAAATCAGAGGAGGTGAAGAAGAAATGGAGGAAAATGGAGGAGGAGGACAAGTGGGTTTTGATAAAAGGGTTTGTTTCAGAGTGGGGGGTCAATTTTCACCCATTGTCTGCAAAGTCTGTTAAGGAATTGGTTGAAGAACATCTCCATGAAGAAAACCCACCTGCAAAATCTTCTGCTTCAGCATTTTTTCCTGGTTTGAAGAGAATGATGGGGTTCTCAGAAGACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.97

Weight (kDa)

9.19

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014589)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 430
Acc36I ACCTGC 1 cut(s) 430
AcsI RAATTY 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 423
AfaI GTAC 1 cut(s) 251
AgsI TTSAA 4 cut(s) 91, 261, 395, 460
AjnI CCWGG 1 cut(s) 451
AluBI AGCT 3 cut(s) 154, 226, 241
AluI AGCT 3 cut(s) 154, 226, 241
AoxI GGCC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 286, 350
BccI CCATC 1 cut(s) 463
BciT130I CCWGG 1 cut(s) 453
BfuAI ACCTGC 1 cut(s) 430
Bme1390I CCNGG 1 cut(s) 453
BmrFI CCNGG 1 cut(s) 453
BmsI GCATC 2 cut(s) 136, 167
BplI GAGNNNNNCTC 2 cut(s) 213, 245
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bse1I ACTGG 1 cut(s) 247
BseBI CCWGG 1 cut(s) 453
BseMII CTCAG 1 cut(s) 492
BseNI ACTGG 1 cut(s) 247
BseRI GAGGAG 3 cut(s) 284, 314, 317
BshFI GGCC 1 cut(s) 206
BsnI GGCC 1 cut(s) 206
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 491
BspMI ACCTGC 1 cut(s) 430
BspQI GCTCTTC 1 cut(s) 209
BsrI ACTGG 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 453
Bst6I CTCTTC 4 cut(s) 195, 209, 236, 455
BstAPI GCANNNNNTGC 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 2 cut(s) 8, 478
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 453
BstSCI CCNGG 1 cut(s) 451
BsuRI GGCC 1 cut(s) 206
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 121, 148
BveI ACCTGC 1 cut(s) 430
Cac8I GCNNGC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 250
CviAII CATG 3 cut(s) 190, 208, 407
CviJI RGCY 4 cut(s) 154, 206, 226, 241
CviKI_1 RGCY 4 cut(s) 154, 206, 226, 241
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 2 cut(s) 8, 478
Eam1104I CTCTTC 4 cut(s) 195, 209, 236, 455
EarI CTCTTC 4 cut(s) 195, 209, 236, 455
Eco57I CTGAAG 1 cut(s) 423
EcoRII CCWGG 1 cut(s) 451
FaeI CATG 3 cut(s) 193, 211, 410
FaiI YATR 4 cut(s) 80, 191, 209, 408
FatI CATG 3 cut(s) 189, 207, 406
HaeIII GGCC 1 cut(s) 206
Hin1II CATG 3 cut(s) 193, 211, 410
HinfI GANTC 1 cut(s) 16
HphI GGTGA 2 cut(s) 286, 350
Hpy188I TCNGA 4 cut(s) 163, 268, 340, 481
HpyCH4V TGCA 6 cut(s) 126, 149, 158, 193, 371, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 8, 478
Hsp92II CATG 3 cut(s) 193, 211, 410
LguI GCTCTTC 1 cut(s) 209
LpnPI CCDG 5 cut(s) 109, 260, 435, 438, 465
LweI GCATC 2 cut(s) 136, 167
MluCI AATT 6 cut(s) 53, 64, 256, 352, 386, 487
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 405
MspR9I CCNGG 1 cut(s) 453
MvaI CCWGG 1 cut(s) 453
MwoI GCNNNNNNNGC 1 cut(s) 155
NlaIII CATG 3 cut(s) 193, 211, 410
PaqCI CACCTGC 1 cut(s) 430
PciSI GCTCTTC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 451
PspGI CCWGG 1 cut(s) 451
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 405
SapI GCTCTTC 1 cut(s) 209
SaqAI TTAA 1 cut(s) 381
ScrFI CCNGG 1 cut(s) 453
SetI ASST 7 cut(s) 49, 156, 228, 243, 255, 276, 424
SfaNI GCATC 2 cut(s) 136, 167
SmiMI CAYNNNNRTG 1 cut(s) 405
Sse9I AATT 6 cut(s) 53, 64, 256, 352, 386, 487
StyD4I CCNGG 1 cut(s) 451
TasI AATT 6 cut(s) 53, 64, 256, 352, 386, 487
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 2 cut(s) 128, 148
TspDTI ATGAA 5 cut(s) 29, 178, 191, 224, 423
TspRI CASTG 2 cut(s) 128, 148
XapI RAATTY 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.