Rh6CG166200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0014589
Physical Location & Seq
Reverse (-)
22527266 .. 22528359
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG166200.1

Sequence Viewer

Length: 468 bp
ATGGCTCTAAGAATGCATCTCCTTTCCCCCAAAGCCCCCCGACAACCTCCAAAATTCCACACCGGTCCCTTCCCCTCCACCAGACCCAAAACCCGAACAATCCAATGCAAAAAGAAGAGCATAAGCGATGCCGAGCTCGCATCAGATTTGTCAAAGATGACCACCCTTTTCGCGCAGAGAGACGAAGCCATGAACAAGAGCAGAGAGCTTCTCTTCACAGAGCTGTGCCAATTCCTGGATTCGAAACCAGAGGAAGTCAAGAAGAAATGGAGGAAATTGGATGAGGACGAGAAGCGGGTTTTGGTTAAAGCCTTTGTTTCAGAGTGGGGTGTCAATTTTCACCCTCTGTCTGCAAAATCTGTTCAAGATTTGGTCGAGGAGCACCTGCAGCACCAAAACCCACCTGCAAAATCCCCTTTGTTTCCTGGTTTGAAGAGGATGATGGGTTTCTCAGAAGAAGACAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.89

Weight (kDa)

9.49

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7026 PF22950 60 - 109 5.8e-26 Domain of unknown function (DUF7026)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014589)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64480 AT5G64480
fragaria_vesca FvH4_2g11070
malus_domestica MD10G1057800.v1.1
prunus_persica Prupe.8G076600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0269271
rosa_laevigata RLG00000013863 RLG00000013866
rosa_multiflora Rmu_ssc0000474.1_g000042 Rmu_ssc0000474.1_g000043
rosa_roxburghii Rroxscaffold_7G00198890
rosa_rugosa Rorug06G0047300
rosa_samantha Rh6AG166800 Rh6BG172400 Rh6CG166200 Rh6DG157900
rosa_wichuraiana Rw6G014420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 393, 412
Acc36I ACCTGC 2 cut(s) 393, 412
AccB7I CCANNNNNTGG 1 cut(s) 235
AccII CGCG 1 cut(s) 173
AciI CCGC 1 cut(s) 295
AcsI RAATTY 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 235
AgeI ACCGGT 1 cut(s) 62
AgsI TTSAA 2 cut(s) 365, 433
AjnI CCWGG 2 cut(s) 234, 424
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 3 cut(s) 136, 208, 223
AluI AGCT 3 cut(s) 136, 208, 223
Alw21I GWGCWC 2 cut(s) 138, 384
Alw26I GTCTC 1 cut(s) 174
ApeKI GCWGC 1 cut(s) 388
ApoI RAATTY 1 cut(s) 53
AsiGI ACCGGT 1 cut(s) 62
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 332
AsuII TTCGAA 1 cut(s) 242
AvaII GGWCC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 138
Bbv12I GWGCWC 2 cut(s) 138, 384
BbvI GCAGC 1 cut(s) 400
BccI CCATC 1 cut(s) 436
BciT130I CCWGG 2 cut(s) 236, 426
BcoDI GTCTC 1 cut(s) 174
BfmI CTRYAG 1 cut(s) 386
BfuAI ACCTGC 2 cut(s) 393, 412
BisI GCNGC 1 cut(s) 389
BlsI GCNGC 1 cut(s) 390
Bme1390I CCNGG 2 cut(s) 236, 426
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 2 cut(s) 236, 426
BmsI GCATC 3 cut(s) 25, 118, 149
BplI GAGNNNNNCTC 2 cut(s) 195, 227
Bpu14I TTCGAA 1 cut(s) 242
BsaWI WCCGGW 1 cut(s) 62
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse118I RCCGGY 1 cut(s) 62
BseBI CCWGG 2 cut(s) 236, 426
BseGI GGATG 2 cut(s) 286, 444
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 465
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 400
Bsh1236I CGCG 1 cut(s) 173
BshTI ACCGGT 1 cut(s) 62
BsiHKAI GWGCWC 2 cut(s) 138, 384
BsiSI CCGG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 174
BsmBI CGTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 51
BsmI GAATGC 1 cut(s) 18
Bsp119I TTCGAA 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 138, 384
BspACI CCGC 1 cut(s) 295
BspCNI CTCAG 1 cut(s) 464
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 390
BspMI ACCTGC 2 cut(s) 393, 412
BspQI GCTCTTC 1 cut(s) 110
BspT104I TTCGAA 1 cut(s) 242
BsrFI RCCGGY 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 62
Bst2UI CCWGG 2 cut(s) 236, 426
Bst6I CTCTTC 3 cut(s) 110, 218, 428
BstBI TTCGAA 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 8, 451
BstF5I GGATG 2 cut(s) 286, 444
BstFNI CGCG 1 cut(s) 173
BstHHI GCGC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 174
BstMWI GCNNNNNNNGC 2 cut(s) 137, 388
BstNI CCWGG 2 cut(s) 236, 426
BstSCI CCNGG 2 cut(s) 234, 424
BstSFI CTRYAG 1 cut(s) 386
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 400
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 2 cut(s) 286, 444
BveI ACCTGC 2 cut(s) 393, 412
Cac8I GCNNGC 1 cut(s) 138
CfoI GCGC 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 65
CspAI ACCGGT 1 cut(s) 62
CviAII CATG 1 cut(s) 190
CviJI RGCY 7 cut(s) 5, 35, 136, 188, 208, 223, 311
CviKI_1 RGCY 7 cut(s) 5, 35, 136, 188, 208, 223, 311
DdeI CTNAG 2 cut(s) 8, 451
Eam1104I CTCTTC 3 cut(s) 110, 218, 428
EarI CTCTTC 3 cut(s) 110, 218, 428
Ecl136II GAGCTC 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 65
Eco53kI GAGCTC 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 234, 424
EcoT22I ATGCAT 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 138
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 1 cut(s) 193
FaiI YATR 2 cut(s) 122, 191
FaqI GGGAC 1 cut(s) 51
FatI CATG 1 cut(s) 189
FauI CCCGC 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 389
FokI GGATG 2 cut(s) 293, 451
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 389
GlaI GCGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 389
HapII CCGG 1 cut(s) 63
HhaI GCGC 1 cut(s) 175
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HinfI GANTC 1 cut(s) 239
HpaII CCGG 1 cut(s) 63
HphI GGTGA 1 cut(s) 332
Hpy188I TCNGA 3 cut(s) 145, 322, 454
Hpy188III TCNNGA 2 cut(s) 259, 365
HpyAV CCTTC 1 cut(s) 79
HpyCH4V TGCA 5 cut(s) 16, 108, 353, 388, 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 388
HpyF3I CTNAG 2 cut(s) 8, 451
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 1 cut(s) 173
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 1 cut(s) 379
LpnPI CCDG 9 cut(s) 76, 94, 221, 248, 261, 398, 411, 417, 438
Lsp1109I GCAGC 1 cut(s) 400
LweI GCATC 3 cut(s) 25, 118, 149
MboII GAAGA 5 cut(s) 127, 205, 274, 445, 467
MhlI GDGCHC 2 cut(s) 138, 384
MluCI AATT 4 cut(s) 53, 230, 275, 334
MnlI CCTC 8 cut(s) 57, 85, 244, 264, 277, 354, 370, 429
Mph1103I ATGCAT 1 cut(s) 18
MseI TTAA 1 cut(s) 306
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 2 cut(s) 236, 426
Mva1269I GAATGC 1 cut(s) 18
MvaI CCWGG 2 cut(s) 236, 426
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 137, 388
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 1 cut(s) 67
NmeAIII GCCGAG 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 18
NspV TTCGAA 1 cut(s) 242
PaqCI CACCTGC 2 cut(s) 393, 412
PciSI GCTCTTC 1 cut(s) 110
PctI GAATGC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 239
PflMI CCANNNNNTGG 1 cut(s) 235
PfoI TCCNGGA 1 cut(s) 234
PinAI ACCGGT 1 cut(s) 62
PkrI GCNGC 1 cut(s) 390
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 2 cut(s) 234, 424
PspGI CCWGG 2 cut(s) 234, 424
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 1 cut(s) 65
PstI CTGCAG 1 cut(s) 390
SacI GAGCTC 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 1 cut(s) 389
Sau96I GGNCC 1 cut(s) 65
ScrFI CCNGG 2 cut(s) 236, 426
SduI GDGCHC 2 cut(s) 138, 384
SetI ASST 6 cut(s) 49, 138, 210, 225, 387, 406
SfaNI GCATC 3 cut(s) 25, 118, 149
SfcI CTRYAG 1 cut(s) 386
SfuI TTCGAA 1 cut(s) 242
SinI GGWCC 1 cut(s) 65
Sse9I AATT 4 cut(s) 53, 230, 275, 334
SsiI CCGC 1 cut(s) 295
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 2 cut(s) 234, 424
TaqI TCGA 2 cut(s) 242, 375
TasI AATT 4 cut(s) 53, 230, 275, 334
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseI GCWGC 1 cut(s) 388
TspDTI ATGAA 1 cut(s) 206
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 65
XapI RAATTY 1 cut(s) 53
Zsp2I ATGCAT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.