FvH4_2g11070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014589
Physical Location & Seq
Reverse (-)
9676358 .. 9676813
456 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11070.t1

Sequence Viewer

Length: 456 bp
ATGGCTCTGAGAATGCATCTCCTTTCCCCCAAAACCCCCCAACAAACTCCAAAGTTCCACACCAGTCCCAGACCCAAAACCCTAACAATCCAGTGCAAAAAGAAGAGGAGCCTCAGCGACGCCGAGCTTGCATCAGATTTATCAAAGATGACCACCCTTTTCGCCCAGAGAGACGAAGCCGTCAACAAGAGCAGGCAGCTTCTCTTCACAGAGCTCTGCCAATTCCTGGATTCAAAACCAGACGAGGTCAGCAAGAAATGGAGGAAACTGGGTGAGGATGACAAGTGGGCTTTGGTTAAAGGTTTTGTTTCTGAGTGGGGCGTCAACTTTCACCCTTTGTCTGCAAAATCTGTCAAAGATTTGGTCGAGGAGCACCTGCATCAACAAAACCCACCTCCTAAATCTCTCTTGTTTCCTGGTTTCAAGAGAATGATGGGTTTCTCCGAAGACCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.38

Weight (kDa)

9.52

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7026 PF22950 57 - 106 2.1e-25 Domain of unknown function (DUF7026)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014589)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64480 AT5G64480
fragaria_vesca FvH4_2g11070
malus_domestica MD10G1057800.v1.1
prunus_persica Prupe.8G076600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0269271
rosa_laevigata RLG00000013863 RLG00000013866
rosa_multiflora Rmu_ssc0000474.1_g000042 Rmu_ssc0000474.1_g000043
rosa_roxburghii Rroxscaffold_7G00198890
rosa_rugosa Rorug06G0047300
rosa_samantha Rh6AG166800 Rh6BG172400 Rh6CG166200 Rh6DG157900
rosa_wichuraiana Rw6G014420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 384
AasI GACNNNNNNGTC 1 cut(s) 179
Acc36I ACCTGC 1 cut(s) 384
AccB7I CCANNNNNTGG 1 cut(s) 226
AcyI GRCGYC 2 cut(s) 120, 321
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 2 cut(s) 234, 424
AjnI CCWGG 2 cut(s) 225, 415
AluBI AGCT 3 cut(s) 127, 199, 214
AluI AGCT 3 cut(s) 127, 199, 214
Alw21I GWGCWC 2 cut(s) 216, 375
Alw26I GTCTC 1 cut(s) 165
ApeKI GCWGC 1 cut(s) 196
ArsI GACNNNNNNTTYG 2 cut(s) 348, 380
AsuHPI GGTGA 2 cut(s) 284, 323
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 2 cut(s) 216, 375
BbvCI CCTCAGC 1 cut(s) 113
BbvI GCAGC 1 cut(s) 208
BccI CCATC 1 cut(s) 427
BceAI ACGGC 1 cut(s) 164
BciT130I CCWGG 2 cut(s) 227, 417
BcoDI GTCTC 1 cut(s) 165
BfuAI ACCTGC 1 cut(s) 384
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme1390I CCNGG 2 cut(s) 227, 417
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 2 cut(s) 227, 417
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 3 cut(s) 25, 140, 388
BmuI ACTGGG 1 cut(s) 278
Bpu10I CCTNAGC 1 cut(s) 113
BsaHI GRCGYC 2 cut(s) 120, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 3 cut(s) 63, 91, 273
BseBI CCWGG 2 cut(s) 227, 417
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 2 cut(s) 127, 303
BseNI ACTGG 3 cut(s) 63, 91, 273
BseRI GAGGAG 2 cut(s) 121, 383
BseXI GCAGC 1 cut(s) 208
BsiHKAI GWGCWC 2 cut(s) 216, 375
BslFI GGGAC 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 165
BsmBI CGTCTC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 51
BsmI GAATGC 1 cut(s) 18
Bsp1286I GDGCHC 2 cut(s) 216, 375
BspCNI CTCAG 2 cut(s) 126, 304
BspLI GGNNCC 1 cut(s) 110
BspMI ACCTGC 1 cut(s) 384
BsrI ACTGG 3 cut(s) 63, 91, 273
BssNI GRCGYC 2 cut(s) 120, 321
Bst2UI CCWGG 2 cut(s) 227, 417
Bst6I CTCTTC 2 cut(s) 98, 209
BstACI GRCGYC 2 cut(s) 120, 321
BstC8I GCNNGC 2 cut(s) 129, 194
BstDEI CTNAG 3 cut(s) 8, 113, 312
BstF5I GGATG 1 cut(s) 283
BstMAI GTCTC 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 2 cut(s) 227, 417
BstSCI CCNGG 2 cut(s) 225, 415
BstV1I GCAGC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 98
BveI ACCTGC 1 cut(s) 384
Cac8I GCNNGC 2 cut(s) 129, 194
CseI GACGC 2 cut(s) 128, 310
CviJI RGCY 7 cut(s) 5, 111, 127, 179, 199, 214, 290
CviKI_1 RGCY 7 cut(s) 5, 111, 127, 179, 199, 214, 290
DdeI CTNAG 3 cut(s) 8, 113, 312
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
Eam1104I CTCTTC 2 cut(s) 98, 209
EarI CTCTTC 2 cut(s) 98, 209
Ecl136II GAGCTC 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 214
EcoRII CCWGG 2 cut(s) 225, 415
EcoT22I ATGCAT 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 165
FaqI GGGAC 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 197
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 197
GluI GCNGC 1 cut(s) 197
HgaI GACGC 2 cut(s) 128, 310
Hin1I GRCGYC 2 cut(s) 120, 321
HincII GTYRAC 2 cut(s) 184, 325
HindII GTYRAC 2 cut(s) 184, 325
HinfI GANTC 1 cut(s) 230
HphI GGTGA 2 cut(s) 284, 323
Hpy166II GTNNAC 2 cut(s) 184, 325
Hpy188I TCNGA 4 cut(s) 9, 136, 313, 445
Hpy188III TCNNGA 1 cut(s) 424
Hpy8I GTNNAC 2 cut(s) 184, 325
Hpy99I CGWCG 1 cut(s) 122
HpyCH4V TGCA 5 cut(s) 16, 96, 131, 344, 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 3 cut(s) 8, 113, 312
Hsp92I GRCGYC 2 cut(s) 120, 321
LmnI GCTCC 2 cut(s) 108, 370
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 3 cut(s) 25, 140, 388
MboII GAAGA 2 cut(s) 115, 196
MhlI GDGCHC 2 cut(s) 216, 375
MluCI AATT 1 cut(s) 221
MnlI CCTC 7 cut(s) 99, 122, 238, 255, 268, 361, 405
Mph1103I ATGCAT 1 cut(s) 18
MseI TTAA 1 cut(s) 297
MspR9I CCNGG 2 cut(s) 227, 417
Mva1269I GAATGC 1 cut(s) 18
MvaI CCWGG 2 cut(s) 227, 417
MwoI GCNNNNNNNGC 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 110
NmeAIII GCCGAG 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 18
PaqCI CACCTGC 1 cut(s) 384
PctI GAATGC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 230
PflFI GACNNNGTC 1 cut(s) 245
PflMI CCANNNNNTGG 1 cut(s) 226
PfoI TCCNGGA 1 cut(s) 225
PkrI GCNGC 1 cut(s) 198
Psp124BI GAGCTC 1 cut(s) 216
Psp6I CCWGG 2 cut(s) 225, 415
PspGI CCWGG 2 cut(s) 225, 415
PspN4I GGNNCC 1 cut(s) 110
PsyI GACNNNGTC 1 cut(s) 245
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 1 cut(s) 197
ScrFI CCNGG 2 cut(s) 227, 417
SduI GDGCHC 2 cut(s) 216, 375
SetI ASST 7 cut(s) 129, 201, 216, 249, 304, 378, 397
SfaNI GCATC 3 cut(s) 25, 140, 388
Sse9I AATT 1 cut(s) 221
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 2 cut(s) 225, 415
TaqI TCGA 1 cut(s) 366
TasI AATT 1 cut(s) 221
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 1 cut(s) 98
TseI GCWGC 1 cut(s) 196
TspRI CASTG 1 cut(s) 98
Tth111I GACNNNGTC 1 cut(s) 245
Van91I CCANNNNNTGG 1 cut(s) 226
Zsp2I ATGCAT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.