Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014026

Physical Location & Seq

Genomic Coordinates Reverse (-)

26211746 .. 26213233

Gene Structure 1488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTCCTCCCATACCAATCTCCCCTCTCCCAAACCAGTTCCTAAACCAGATCACCGTATCTCCGGTACATCCCAAACCAAGAAACCACCGTCTTCCTCCGTAGCTCAAGACCAACAAAACCTAAAATGCCCTCGTTGCAACTCTCCAAACACAAAGTTCTGTTACTACAACAACTACAGTCTCTCTCAACCTCGTCACTTCTGCAAATCTTGTCGCCGTTACTGGACACGTGGCGGTGCTCTAAGAAACGTCCCCATCGGTGGTGGTTGCCGGAAAACCAAAAAATCTATCAAACCTAATTCCTCCATGAACACACTTCCTTCGTCTTCTTCCTCTCAGAGGTTCTTCTCATCAATCATGGAAGATTCATCCAAATTCTTCCCTCCTCCGACAACAATGGATTTTCAGCTGGCCGGATTATCTCTCAACAAAATGAACGATCTTCAACTTTTGAATAACCAAGAAGTTCTTGATCTTAGGCCCATGATGTCCTCGGGCCGAGAAAACACACCCGTTGATGTCGGGTCGGGTTTATCCCTAATGGGTTTTGGAGATTTCAACAACAACCATTCACCGACGGGGTTCACAACCGCCGGAGCAAGCGACGGAAACTTAGCTTCTTCTATAGAGACTTTGAGTTGTTTAAACCAAGATTTACACTGGAGGCTTCAGCAACAGAGGATGGCGATGCTTTTTGGTAATTCTAAGGAAGAAACTGTTGTCGTCGAGAGGCCACAACCTATTCTTTATCGGAATCTTGAGATCGTAAACTCATCATCGCCGTCGTCGCCGACGAAGAAAGGAGATAATCAGACAGAGTGGTATTTTGGTAATAACAGTGATAATGAAGGAGTGATTAGTAATAATGCTAATACAGGAGGAGGAGGAAGTGAATGGAACAATGGAATTCAAGCTTGGACTGATCTTAATCATTATAATGCATTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009838 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010118 GO:0010227 GO:0010374 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032881 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902066 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

316

Amino Acids

34.85

Weight (kDa)

9.05

Isoelectric Point (pI)

55.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	39 - 95	7e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65590
fragaria_vesca	FvH4_1g19310
malus_domestica	MD01G1041500.v1.1 MD15G1309400.v1.1
prunus_persica	Prupe.6G205200_v2.0.a1
pyrus_communis	pycom01g06920 pycom15g27370
rosa_chinensis	RchiOBHm_Chr2g0110671
rosa_laevigata	RLG00000017829
rosa_multiflora	Rmu_sc0000389.1_g000038
rosa_roxburghii	Rroxscaffold_2G00133050
rosa_rugosa	Rorug02G0168500.1
rosa_samantha	Rh2AG220800 Rh2BG230900 Rh2CG223200 Rh2DG227000
rosa_wichuraiana	Rw2G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	936
AciI	CCGC	2 cut(s)	234, 591
AcoI	YGGCCR	1 cut(s)	411
AcsI	RAATTY	2 cut(s)	374, 906
AcuI	CTGAAG	1 cut(s)	653
AcvI	CACGTG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	260, 339
AflIII	ACRYGT	1 cut(s)	227
AgsI	TTSAA	4 cut(s)	446, 454, 559, 911
AjuI	GAANNNNNNNTTGG	2 cut(s)	898, 930
AluBI	AGCT	4 cut(s)	104, 409, 617, 914
AluI	AGCT	4 cut(s)	104, 409, 617, 914
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	2 cut(s)	185, 623
Ama87I	CYCGRG	1 cut(s)	493
AoxI	GGCC	4 cut(s)	411, 479, 496, 731
ApoI	RAATTY	2 cut(s)	374, 906
AspS9I	GGNCC	2 cut(s)	480, 496
AsuHPI	GGTGA	2 cut(s)	44, 564
AvaI	CYCGRG	1 cut(s)	493
BbrPI	CACGTG	1 cut(s)	230
BbsI	GAAGAC	2 cut(s)	84, 318
Bbv12I	GWGCWC	1 cut(s)	241
BccI	CCATC	2 cut(s)	263, 676
BceAI	ACGGC	2 cut(s)	201, 766
BcoDI	GTCTC	2 cut(s)	185, 623
BfmI	CTRYAG	2 cut(s)	175, 624
BmeT110I	CYCGRG	1 cut(s)	493
BmgT120I	GGNCC	2 cut(s)	480, 496
BmsI	GCATC	1 cut(s)	678
BpiI	GAAGAC	2 cut(s)	84, 318
BpmI	CTGGAG	1 cut(s)	682
BpuEI	CTTGAG	2 cut(s)	90, 779
BsaAI	YACGTR	1 cut(s)	230
BsaBI	GATNNNNATC	1 cut(s)	927
BsaJI	CCNNGG	1 cut(s)	492
BsaWI	WCCGGW	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 339
Bse1I	ACTGG	3 cut(s)	35, 227, 665
Bse3DI	GCAATG	1 cut(s)	941
Bse8I	GATNNNNATC	1 cut(s)	927
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	3 cut(s)	68, 368, 687
BseJI	GATNNNNATC	1 cut(s)	927
BseLI	CCNNNNNNNGG	2 cut(s)	260, 339
BseMI	GCAATG	1 cut(s)	941
BseMII	CTCAG	1 cut(s)	350
BseNI	ACTGG	3 cut(s)	35, 227, 665
BseRI	GAGGAG	3 cut(s)	375, 894, 897
BshFI	GGCC	4 cut(s)	413, 481, 498, 733
BsiHKAI	GWGCWC	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	493
BsiSI	CCGG	4 cut(s)	63, 271, 414, 594
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	260, 339
BsmAI	GTCTC	2 cut(s)	185, 623
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	4 cut(s)	413, 481, 498, 733
BsoBI	CYCGRG	1 cut(s)	493
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	5 cut(s)	49, 439, 472, 762, 922
BspACI	CCGC	2 cut(s)	234, 591
BspANI	GGCC	4 cut(s)	413, 481, 498, 733
BspCNI	CTCAG	1 cut(s)	349
BsrDI	GCAATG	1 cut(s)	941
BsrI	ACTGG	3 cut(s)	35, 227, 665
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	5 cut(s)	49, 439, 472, 762, 922
Bst4CI	ACNGT	5 cut(s)	56, 90, 179, 718, 839
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	2 cut(s)	411, 601
BstDEI	CTNAG	5 cut(s)	242, 336, 476, 613, 705
BstENI	CCTNNNNNAGG	1 cut(s)	337
BstF5I	GGATG	3 cut(s)	68, 368, 687
BstKTI	GATC	5 cut(s)	52, 442, 475, 765, 925
BstMAI	GTCTC	2 cut(s)	185, 623
BstMBI	GATC	5 cut(s)	49, 439, 472, 762, 922
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 787
BstSFI	CTRYAG	2 cut(s)	175, 624
BstV2I	GAAGAC	2 cut(s)	84, 318
BsuRI	GGCC	4 cut(s)	413, 481, 498, 733
BtgZI	GCGATG	2 cut(s)	701, 762
BtsCI	GGATG	3 cut(s)	68, 368, 687
BtsIMutI	CAGTG	2 cut(s)	658, 844
Cac8I	GCNNGC	2 cut(s)	411, 601
Cfr13I	GGNCC	2 cut(s)	480, 496
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	3 cut(s)	307, 358, 484
CviJI	RGCY	9 cut(s)	104, 409, 413, 481, 498, 617, 667, 733, 914
CviKI_1	RGCY	9 cut(s)	104, 409, 413, 481, 498, 617, 667, 733, 914
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	5 cut(s)	242, 336, 476, 613, 705
DpnI	GATC	5 cut(s)	51, 441, 474, 764, 924
DpnII	GATC	5 cut(s)	49, 439, 472, 762, 922
DraI	TTTAAA	1 cut(s)	645
EaeI	YGGCCR	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	653
Eco72I	CACGTG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	493
EcoNI	CCTNNNNNAGG	1 cut(s)	337
EcoRI	GAATTC	1 cut(s)	906
EcoT22I	ATGCAT	1 cut(s)	943
FaeI	CATG	3 cut(s)	310, 361, 487
FaiI	YATR	6 cut(s)	12, 308, 359, 485, 626, 936
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	3 cut(s)	306, 357, 483
FokI	GGATG	3 cut(s)	55, 355, 694
GsuI	CTGGAG	1 cut(s)	682
HaeIII	GGCC	4 cut(s)	413, 481, 498, 733
HapII	CCGG	4 cut(s)	63, 271, 414, 594
Hin1II	CATG	3 cut(s)	310, 361, 487
HindIII	AAGCTT	1 cut(s)	912
HinfI	GANTC	2 cut(s)	365, 754
HpaII	CCGG	4 cut(s)	63, 271, 414, 594
HphI	GGTGA	2 cut(s)	44, 564
Hpy166II	GTNNAC	2 cut(s)	585, 769
Hpy188I	TCNGA	4 cut(s)	339, 390, 753, 813
Hpy188III	TCNNGA	4 cut(s)	107, 470, 727, 758
Hpy8I	GTNNAC	2 cut(s)	585, 769
Hpy99I	CGWCG	6 cut(s)	580, 608, 728, 787, 790, 796
HpyAV	CCTTC	2 cut(s)	330, 842
HpyCH4III	ACNGT	5 cut(s)	56, 90, 179, 718, 839
HpyCH4IV	ACGT	2 cut(s)	229, 249
HpyCH4V	TGCA	3 cut(s)	138, 204, 941
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 787
HpyF3I	CTNAG	5 cut(s)	242, 336, 476, 613, 705
HpySE526I	ACGT	2 cut(s)	229, 249
Hsp92II	CATG	3 cut(s)	310, 361, 487
Kzo9I	GATC	5 cut(s)	49, 439, 472, 762, 922
LmnI	GCTCC	1 cut(s)	596
LweI	GCATC	1 cut(s)	678
MaeII	ACGT	2 cut(s)	229, 249
MaeIII	GTNAC	3 cut(s)	161, 194, 218
MalI	GATC	5 cut(s)	51, 441, 474, 764, 924
MboI	GATC	5 cut(s)	49, 439, 472, 762, 922
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	4 cut(s)	298, 374, 700, 906
MmeI	TCCRAC	1 cut(s)	413
Mph1103I	ATGCAT	1 cut(s)	943
MseI	TTAA	2 cut(s)	644, 927
MslI	CAYNNNNRTG	1 cut(s)	936
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	4 cut(s)	63, 271, 414, 594
MssI	GTTTAAAC	1 cut(s)	645
MwoI	GCNNNNNNNGC	2 cut(s)	135, 787
NdeII	GATC	5 cut(s)	49, 439, 472, 762, 922
NlaIII	CATG	3 cut(s)	310, 361, 487
NmeAIII	GCCGAG	1 cut(s)	524
NmuCI	GTSAC	1 cut(s)	194
NsiI	ATGCAT	1 cut(s)	943
PcsI	WCGNNNNNNNCGW	1 cut(s)	791
PfeI	GAWTC	2 cut(s)	365, 754
PmaCI	CACGTG	1 cut(s)	230
PmeI	GTTTAAAC	1 cut(s)	645
PmlI	CACGTG	1 cut(s)	230
Ppu21I	YACGTR	1 cut(s)	230
PsiI	TTATAA	1 cut(s)	936
PspCI	CACGTG	1 cut(s)	230
PspPI	GGNCC	2 cut(s)	480, 496
PvuII	CAGCTG	1 cut(s)	409
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
RseI	CAYNNNNRTG	1 cut(s)	936
SaqAI	TTAA	2 cut(s)	644, 927
Sau3AI	GATC	5 cut(s)	49, 439, 472, 762, 922
Sau96I	GGNCC	2 cut(s)	480, 496
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	1 cut(s)	678
SfcI	CTRYAG	2 cut(s)	175, 624
SmiMI	CAYNNNNRTG	1 cut(s)	936
SmlI	CTYRAG	2 cut(s)	105, 758
SmoI	CTYRAG	2 cut(s)	105, 758
Sse9I	AATT	4 cut(s)	298, 374, 700, 906
SsiI	CCGC	2 cut(s)	234, 591
TaaI	ACNGT	5 cut(s)	56, 90, 179, 718, 839
TaiI	ACGT	2 cut(s)	232, 252
TaqI	TCGA	1 cut(s)	726
TasI	AATT	4 cut(s)	298, 374, 700, 906
TfiI	GAWTC	2 cut(s)	365, 754
Tru1I	TTAA	2 cut(s)	644, 927
Tru9I	TTAA	2 cut(s)	644, 927
TscAI	CASTG	2 cut(s)	665, 844
TseFI	GTSAC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	4 cut(s)	323, 357, 449, 861
TspGWI	ACGGA	2 cut(s)	88, 621
TspRI	CASTG	2 cut(s)	665, 844
XagI	CCTNNNNNAGG	1 cut(s)	337
XapI	RAATTY	2 cut(s)	374, 906
Zsp2I	ATGCAT	1 cut(s)	943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.