Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014026

Physical Location & Seq

Genomic Coordinates Forward (+)

22733510 .. 22735385

Gene Structure 1876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG230900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGATGTCCTCCGACAACACGCCGGCTAAAAAGCCGGCAGACGACACTCAACAAGGAGGAGGAGGATCAGGCAACAGCCGCAAAACGACATCGTCCAAGGTCCCGCCGGAGCAAGCCCTCAAGTGTCCGAGATGTGATTCCCCAAACACAAAGTTCTGCTACTACAACAACTACAGCCTGACGCAGCCCAGACACTTCTGTAAGACCTGCAGGCGTTACTGGACCAAAGGCGGAGCGTTACGCAACGTCCCCATCGGCGGCGGCTGCCGGAAAAACAAGAGAGTAAGGTCGTCATCTTCCCGACTCTCCTGCAGCCTCGACTCCAAAGACTCCGGCGACTCGGCCTCTGACCACATGGGTCTCAAGTTCTTTCACGGCATTTCCCCCGCCATGGATTTCCAGCTCGGCGGCCTCTCCTTGCCTAGACTCAACCACCACCCTTCTTCTTCTTCAGCAGTTGTAACCGCCCTTTACAATAACAACAACAGCCAGTTCTCTCCATACGGTGACGTTTCCGTTACTTCTGGCCTGACTCTTGATCCCTCAGGTGGTGCTTCCGGGAATAGTTCCTTTATGGGTTTTAATTATCCTCTCACTTTAGGCAGTGGAAGCGGCGGCGGGGTTGGGTTTCAACAGAACAACATGAACAGTTCCATGAGTGTTCATAGCAGTCTTGCTTCTTCTATTGAGTCCCTTAGTTCTATCAACCAAGACCTTCACTGGAAATTACAGCAGCAGAGGCTGTCCATGTTGTTTGGTACTACTATCGCCGGTGATAGTCAGACACAGCCGTCTCAGAAAGATATGCAGATGAATGATCTCGAGAAAACTCAGACAGCGCCTATTTTGTTTCAGAATCTGGAGATTTCGAAACCGAAAGAGTCTACCGGAGGAGGAGATACGGCTGCGACGGAGTGGTTCTTTGGGAACTCTTACGCACCGCCACCGCCGGTGACACCTACTCCGACCAATAGTGGCGGCAACGGAGTAGGAAACGAGAACAATGCGGGTAACTGGAATACTCATGGAGTTGTTCAAGCTTGGGGTGATTTGCAGCAATACAATGCCTTGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009838 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010118 GO:0010227 GO:0010374 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032881 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902066 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

358

Amino Acids

38.16

Weight (kDa)

8.77

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	38 - 94	2.3e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65590
fragaria_vesca	FvH4_1g19310
malus_domestica	MD01G1041500.v1.1 MD15G1309400.v1.1
prunus_persica	Prupe.6G205200_v2.0.a1
pyrus_communis	pycom01g06920 pycom15g27370
rosa_chinensis	RchiOBHm_Chr2g0110671
rosa_laevigata	RLG00000017829
rosa_multiflora	Rmu_sc0000389.1_g000038
rosa_roxburghii	Rroxscaffold_2G00133050
rosa_rugosa	Rorug02G0168500.1
rosa_samantha	Rh2AG220800 Rh2BG230900 Rh2CG223200 Rh2DG227000
rosa_wichuraiana	Rw2G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	790
Acc36I	ACCTGC	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	884
AclWI	GGATC	2 cut(s)	73, 533
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	1 cut(s)	760
AfiI	CCNNNNNNNGG	3 cut(s)	257, 391, 548
AgsI	TTSAA	2 cut(s)	632, 1037
AluBI	AGCT	2 cut(s)	403, 1040
AluI	AGCT	2 cut(s)	403, 1040
Alw26I	GTCTC	2 cut(s)	365, 798
AlwI	GGATC	2 cut(s)	73, 533
AlwNI	CAGNNNCTG	2 cut(s)	742, 859
Ama87I	CYCGRG	1 cut(s)	821
AoxI	GGCC	3 cut(s)	342, 409, 526
ApeKI	GCWGC	6 cut(s)	184, 264, 312, 733, 905, 1054
AspLEI	GCGC	1 cut(s)	841
AspS9I	GGNCC	2 cut(s)	100, 222
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	4 cut(s)	518, 785, 964, 1058
AsuII	TTCGAA	1 cut(s)	869
AvaI	CYCGRG	1 cut(s)	821
AvaII	GGWCC	2 cut(s)	100, 222
AxyI	CCTNAGG	1 cut(s)	544
BbvI	GCAGC	6 cut(s)	196, 251, 324, 745, 892, 1066
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	3 cut(s)	391, 775, 918
BcgI	CGANNNNNNTGC	4 cut(s)	291, 325, 986, 1020
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	2 cut(s)	365, 798
BfaI	CTAG	2 cut(s)	423, 1075
BfmI	CTRYAG	3 cut(s)	172, 208, 310
BfoI	RGCGCY	1 cut(s)	842
BfuAI	ACCTGC	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	559
Bme18I	GGWCC	2 cut(s)	100, 222
BmeT110I	CYCGRG	1 cut(s)	821
BmgT120I	GGNCC	2 cut(s)	100, 222
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	559
BpmI	CTGGAG	1 cut(s)	881
Bpu14I	TTCGAA	1 cut(s)	869
BpuEI	CTTGAG	2 cut(s)	104, 347
BpuMI	CCSGG	1 cut(s)	559
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	96, 390
BsaWI	WCCGGW	1 cut(s)	887
BsaXI	ACNNNNNCTCC	2 cut(s)	946, 976
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 391, 548
Bse118I	RCCGGY	4 cut(s)	22, 34, 770, 949
Bse1I	ACTGG	4 cut(s)	224, 490, 725, 1019
Bse21I	CCTNAGG	1 cut(s)	544
BseDI	CCNNGG	2 cut(s)	96, 390
BseLI	CCNNNNNNNGG	3 cut(s)	257, 391, 548
BseMII	CTCAG	3 cut(s)	558, 809, 845
BseNI	ACTGG	4 cut(s)	224, 490, 725, 1019
BseRI	GAGGAG	4 cut(s)	72, 75, 906, 909
BseXI	GCAGC	6 cut(s)	196, 251, 324, 745, 892, 1066
BshFI	GGCC	3 cut(s)	344, 411, 528
BsiHKCI	CYCGRG	1 cut(s)	821
BsiSI	CCGG	9 cut(s)	23, 35, 107, 268, 333, 558, 771, 888, 950
BslFI	GGGAC	3 cut(s)	86, 233, 676
BslI	CCNNNNNNNGG	3 cut(s)	257, 391, 548
BsmAI	GTCTC	2 cut(s)	365, 798
BsmBI	CGTCTC	1 cut(s)	798
BsmFI	GGGAC	3 cut(s)	86, 233, 676
BsnI	GGCC	3 cut(s)	344, 411, 528
Bso31I	GGTCTC	1 cut(s)	365
BsoBI	CYCGRG	1 cut(s)	821
Bsp119I	TTCGAA	1 cut(s)	869
Bsp143I	GATC	3 cut(s)	65, 538, 817
Bsp19I	CCATGG	1 cut(s)	390
BspANI	GGCC	3 cut(s)	344, 411, 528
BspCNI	CTCAG	3 cut(s)	557, 808, 844
BspLI	GGNNCC	1 cut(s)	102
BspMAI	CTGCAG	2 cut(s)	212, 314
BspMI	ACCTGC	1 cut(s)	215
BspPI	GGATC	2 cut(s)	73, 533
BspT104I	TTCGAA	1 cut(s)	869
BspTNI	GGTCTC	1 cut(s)	365
BsrFI	RCCGGY	4 cut(s)	22, 34, 770, 949
BsrI	ACTGG	4 cut(s)	224, 490, 725, 1019
BssAI	RCCGGY	4 cut(s)	22, 34, 770, 949
BssECI	CCNNGG	2 cut(s)	96, 390
BssMI	GATC	3 cut(s)	65, 538, 817
BssT1I	CCWWGG	2 cut(s)	96, 390
Bst4CI	ACNGT	2 cut(s)	506, 650
BstBI	TTCGAA	1 cut(s)	869
BstC8I	GCNNGC	4 cut(s)	24, 36, 114, 212
BstDEI	CTNAG	4 cut(s)	544, 695, 795, 831
BstDSI	CCRYGG	1 cut(s)	390
BstH2I	RGCGCY	1 cut(s)	842
BstHHI	GCGC	1 cut(s)	841
BstKTI	GATC	3 cut(s)	68, 541, 820
BstMAI	GTCTC	2 cut(s)	365, 798
BstMBI	GATC	3 cut(s)	65, 538, 817
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 264, 609, 739
BstSCI	CCNGG	1 cut(s)	557
BstSFI	CTRYAG	3 cut(s)	172, 208, 310
BstV1I	GCAGC	6 cut(s)	196, 251, 324, 745, 892, 1066
Bsu36I	CCTNAGG	1 cut(s)	544
BsuRI	GGCC	3 cut(s)	344, 411, 528
BtgI	CCRYGG	1 cut(s)	390
BtsI	GCAGTG	1 cut(s)	610
BtsIMutI	CAGTG	2 cut(s)	610, 718
BveI	ACCTGC	1 cut(s)	215
Cac8I	GCNNGC	4 cut(s)	24, 36, 114, 212
CaiI	CAGNNNCTG	2 cut(s)	742, 859
CfoI	GCGC	1 cut(s)	841
Cfr10I	RCCGGY	4 cut(s)	22, 34, 770, 949
Cfr13I	GGNCC	2 cut(s)	100, 222
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	759
CviAII	CATG	6 cut(s)	355, 391, 643, 655, 748, 1025
CviQI	GTAC	1 cut(s)	759
DdeI	CTNAG	4 cut(s)	544, 695, 795, 831
DpnI	GATC	3 cut(s)	67, 540, 819
DpnII	GATC	3 cut(s)	65, 538, 817
DrdI	GACNNNNNNGTC	1 cut(s)	790
DseDI	GACNNNNNNGTC	1 cut(s)	790
EciI	GGCGGA	1 cut(s)	246
Eco130I	CCWWGG	2 cut(s)	96, 390
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	2 cut(s)	100, 222
Eco57I	CTGAAG	1 cut(s)	435
Eco81I	CCTNAGG	1 cut(s)	544
Eco88I	CYCGRG	1 cut(s)	821
EcoO109I	RGGNCCY	1 cut(s)	100
EcoT14I	CCWWGG	2 cut(s)	96, 390
ErhI	CCWWGG	2 cut(s)	96, 390
Esp3I	CGTCTC	1 cut(s)	798
FaeI	CATG	6 cut(s)	358, 394, 646, 658, 751, 1028
FaqI	GGGAC	3 cut(s)	86, 233, 676
FatI	CATG	6 cut(s)	354, 390, 642, 654, 747, 1024
FauI	CCCGC	4 cut(s)	111, 394, 611, 1000
FblI	GTMKAC	1 cut(s)	884
FspBI	CTAG	2 cut(s)	423, 1075
GlaI	GCGC	1 cut(s)	840
GsuI	CTGGAG	1 cut(s)	881
HaeII	RGCGCY	1 cut(s)	842
HaeIII	GGCC	3 cut(s)	344, 411, 528
HapII	CCGG	9 cut(s)	23, 35, 107, 268, 333, 558, 771, 888, 950
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	841
Hin1II	CATG	6 cut(s)	358, 394, 646, 658, 751, 1028
Hin6I	GCGC	1 cut(s)	839
HinP1I	GCGC	1 cut(s)	839
HindIII	AAGCTT	1 cut(s)	1038
HpaII	CCGG	9 cut(s)	23, 35, 107, 268, 333, 558, 771, 888, 950
HphI	GGTGA	4 cut(s)	518, 785, 964, 1058
Hpy166II	GTNNAC	1 cut(s)	885
Hpy188I	TCNGA	8 cut(s)	13, 129, 349, 783, 798, 834, 855, 966
Hpy188III	TCNNGA	5 cut(s)	300, 536, 821, 823, 860
Hpy8I	GTNNAC	1 cut(s)	885
Hpy99I	CGWCG	1 cut(s)	913
HpyAV	CCTTC	2 cut(s)	450, 725
HpyCH4III	ACNGT	2 cut(s)	506, 650
HpyCH4IV	ACGT	2 cut(s)	246, 510
HpyCH4V	TGCA	4 cut(s)	210, 312, 808, 1054
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 264, 609, 739
HpyF3I	CTNAG	4 cut(s)	544, 695, 795, 831
HpySE526I	ACGT	2 cut(s)	246, 510
Hsp92II	CATG	6 cut(s)	358, 394, 646, 658, 751, 1028
HspAI	GCGC	1 cut(s)	839
KroI	GCCGGC	2 cut(s)	22, 34
KroNI	GCCGGC	2 cut(s)	24, 36
Kzo9I	GATC	3 cut(s)	65, 538, 817
LmnI	GCTCC	2 cut(s)	109, 233
Lsp1109I	GCAGC	6 cut(s)	196, 251, 324, 745, 892, 1066
MaeI	CTAG	2 cut(s)	423, 1075
MaeII	ACGT	2 cut(s)	246, 510
MaeIII	GTNAC	7 cut(s)	215, 237, 460, 506, 517, 952, 1010
MalI	GATC	3 cut(s)	67, 540, 819
MboI	GATC	3 cut(s)	65, 538, 817
MboII	GAAGA	5 cut(s)	288, 435, 438, 441, 672
MluCI	AATT	2 cut(s)	583, 725
MlyI	GAGTC	8 cut(s)	297, 314, 323, 332, 420, 526, 698, 890
MmeI	TCCRAC	2 cut(s)	36, 989
MroNI	GCCGGC	2 cut(s)	22, 34
MseI	TTAA	1 cut(s)	582
MspI	CCGG	9 cut(s)	23, 35, 107, 268, 333, 558, 771, 888, 950
MspR9I	CCNGG	1 cut(s)	559
MwoI	GCNNNNNNNGC	4 cut(s)	78, 264, 609, 739
NaeI	GCCGGC	2 cut(s)	24, 36
NciI	CCSGG	1 cut(s)	559
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	3 cut(s)	65, 538, 817
NgoMIV	GCCGGC	2 cut(s)	22, 34
NlaIII	CATG	6 cut(s)	358, 394, 646, 658, 751, 1028
NlaIV	GGNNCC	1 cut(s)	102
NmeAIII	GCCGAG	2 cut(s)	320, 384
NmuCI	GTSAC	2 cut(s)	506, 952
NspV	TTCGAA	1 cut(s)	869
PaeR7I	CTCGAG	1 cut(s)	821
PdiI	GCCGGC	2 cut(s)	24, 36
PfeI	GAWTC	2 cut(s)	137, 856
PflFI	GACNNNGTC	1 cut(s)	91
PfoI	TCCNGGA	1 cut(s)	557
PleI	GAGTC	8 cut(s)	297, 314, 323, 332, 420, 526, 697, 889
PpsI	GAGTC	8 cut(s)	297, 314, 323, 332, 420, 526, 697, 889
PpuMI	RGGWCCY	1 cut(s)	100
Psp5II	RGGWCCY	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	2 cut(s)	100, 222
PspPPI	RGGWCCY	1 cut(s)	100
PstI	CTGCAG	2 cut(s)	212, 314
PstNI	CAGNNNCTG	2 cut(s)	742, 859
PsyI	GACNNNGTC	1 cut(s)	91
RsaI	GTAC	1 cut(s)	760
RsaNI	GTAC	1 cut(s)	759
SaqAI	TTAA	1 cut(s)	582
Sau3AI	GATC	3 cut(s)	65, 538, 817
Sau96I	GGNCC	2 cut(s)	100, 222
SbfI	CCTGCAGG	1 cut(s)	212
SchI	GAGTC	8 cut(s)	297, 314, 323, 332, 420, 526, 698, 890
ScrFI	CCNGG	1 cut(s)	559
SdaI	CCTGCAGG	1 cut(s)	212
SfcI	CTRYAG	3 cut(s)	172, 208, 310
Sfr274I	CTCGAG	1 cut(s)	821
SfuI	TTCGAA	1 cut(s)	869
SgrAI	CRCCGGYG	2 cut(s)	770, 949
SinI	GGWCC	2 cut(s)	100, 222
SlaI	CTCGAG	1 cut(s)	821
SmlI	CTYRAG	3 cut(s)	119, 362, 821
SmoI	CTYRAG	3 cut(s)	119, 362, 821
Sse8387I	CCTGCAGG	1 cut(s)	212
Sse9I	AATT	2 cut(s)	583, 725
SspMI	CTAG	2 cut(s)	423, 1075
StyD4I	CCNGG	1 cut(s)	557
StyI	CCWWGG	2 cut(s)	96, 390
TaaI	ACNGT	2 cut(s)	506, 650
TaiI	ACGT	2 cut(s)	249, 513
TaqI	TCGA	3 cut(s)	318, 822, 869
TasI	AATT	2 cut(s)	583, 725
TauI	GCSGC	7 cut(s)	81, 261, 264, 411, 615, 618, 981
TfiI	GAWTC	2 cut(s)	137, 856
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	2 cut(s)	610, 725
TseFI	GTSAC	2 cut(s)	506, 952
TseI	GCWGC	6 cut(s)	184, 264, 312, 733, 905, 1054
Tsp45I	GTSAC	2 cut(s)	506, 952
TspDTI	ATGAA	3 cut(s)	653, 659, 827
TspGWI	ACGGA	3 cut(s)	505, 926, 999
TspRI	CASTG	2 cut(s)	610, 725
Tth111I	GACNNNGTC	1 cut(s)	91
VpaK11BI	GGWCC	2 cut(s)	100, 222
XhoI	CTCGAG	1 cut(s)	821
XmiI	GTMKAC	1 cut(s)	884
XspI	CTAG	2 cut(s)	423, 1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.