Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014026

Physical Location & Seq

Genomic Coordinates Reverse (-)

70146303 .. 70148207

Gene Structure 1905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00133050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGATGTCCTCCGACAACACGCCGGCGAAAAAGCCCGCGGATGACACCCAACAAGGAGGAGGAGGATCAGGCAACAGCCGCAAAACGACATCATCCAAGGCCCCGCCGGAGCAAGCCCTCAAGTGTCCGAGATGTGATTCCCCCAACACGAAGTTCTGCTACTACAACAACTACAGCCTGACGCAGCCCAGACACTTCTGTAAGACCTGCAGGCGTTACTGGACCAAAGGCGGAGCGTTACGCAACGTCCCCATCGGTGGCGGCTGCCGGAAAAACAAGAGAGTAAGGTCGTCATCTTCCAGACTCTCCTGTAGCCTCGACTCCAAAGACTCCGGCGACTCGGCCTCCGACCACATGGGTCTCAAGTTCTTTCACGGCATTTCCCCCGCCATGGATTTCCAGCTCGGCGGCCTCTCCTTGCCTAGATTCAACCACCACCCTTCTTCTTCTTCAGCAGTTGTAACCGCCCTTTACAATAACAACAACAGCCAGTTCTCTCCATACGGTGACGTTTCGGTTACTTCTGGCCTGACTCTTGATCCCTCAGGTGGTGCTTCCGGGAATAGTTCCTTTATGGGTTTTAACTATCCTCTCACTTTAGGCAGTGGAAGCGGCGGCGGCGGGGTTGGGTTTCAACAGAACAACATGAACAGTTCCATGAGTGTTCATAGCAGTCTTGCTTCTTCTATTGAGTCCCTTAGTTCTATCAACCAAGACCTTCACTGGAAATTACAGCAGCAGAGGCTGTCCATGTTGTTTGGTACTACTATCGCAGGAGATAATCAGACACAGCCGTCTCAGAAAGATATGCAGATGAATGATCTCGAGAAAACTCAGACAGCGCCTATTTTGTTTCAGAATCTGGAGATTTCGAAACCGAAAGAGTCTACCGGAGGAGGAGATACGGCTGCGACGGAGTGGTTCTTTGGGAACTCTTACGCTCCGCCACCGCCGGTGACACCTACTCCGACCAACAGTGGCGGCAACGGAGGAGGAAACGAGAACAATGCGGGTAACTGGAATACTCATGGAGTTGTTCAAGCGTGGGGTGATTTGCAGCAATACAGTGCCTTGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009838 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010118 GO:0010227 GO:0010374 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032881 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902066 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

359

Amino Acids

38.18

Weight (kDa)

8.77

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	38 - 94	2.3e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65590
fragaria_vesca	FvH4_1g19310
malus_domestica	MD01G1041500.v1.1 MD15G1309400.v1.1
prunus_persica	Prupe.6G205200_v2.0.a1
pyrus_communis	pycom01g06920 pycom15g27370
rosa_chinensis	RchiOBHm_Chr2g0110671
rosa_laevigata	RLG00000017829
rosa_multiflora	Rmu_sc0000389.1_g000038
rosa_roxburghii	Rroxscaffold_2G00133050
rosa_rugosa	Rorug02G0168500.1
rosa_samantha	Rh2AG220800 Rh2BG230900 Rh2CG223200 Rh2DG227000
rosa_wichuraiana	Rw2G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	793
Acc36I	ACCTGC	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	887
AccII	CGCG	1 cut(s)	38
AclWI	GGATC	2 cut(s)	73, 533
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	1 cut(s)	763
AfiI	CCNNNNNNNGG	3 cut(s)	257, 391, 548
AgsI	TTSAA	3 cut(s)	430, 635, 1040
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	1 cut(s)	403
AluI	AGCT	1 cut(s)	403
Alw26I	GTCTC	2 cut(s)	365, 801
AlwI	GGATC	2 cut(s)	73, 533
AlwNI	CAGNNNCTG	2 cut(s)	745, 862
Ama87I	CYCGRG	1 cut(s)	824
AoxI	GGCC	4 cut(s)	99, 342, 409, 526
ApeKI	GCWGC	5 cut(s)	184, 264, 736, 908, 1057
AspLEI	GCGC	1 cut(s)	844
AspS9I	GGNCC	2 cut(s)	100, 222
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	3 cut(s)	518, 967, 1061
AsuII	TTCGAA	1 cut(s)	872
AvaI	CYCGRG	1 cut(s)	824
AvaII	GGWCC	1 cut(s)	222
AxyI	CCTNAGG	1 cut(s)	544
BarI	GAAGNNNNNNTAC	2 cut(s)	143, 175
BbvI	GCAGC	5 cut(s)	196, 251, 748, 895, 1069
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	3 cut(s)	391, 778, 921
BcgI	CGANNNNNNTGC	2 cut(s)	989, 1023
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	2 cut(s)	365, 801
BfaI	CTAG	2 cut(s)	423, 1078
BfmI	CTRYAG	3 cut(s)	172, 208, 310
BfoI	RGCGCY	1 cut(s)	845
BfuAI	ACCTGC	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	559
Bme18I	GGWCC	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	824
BmgT120I	GGNCC	2 cut(s)	100, 222
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	559
BpmI	CTGGAG	1 cut(s)	884
Bpu14I	TTCGAA	1 cut(s)	872
BpuEI	CTTGAG	2 cut(s)	104, 347
BpuMI	CCSGG	1 cut(s)	559
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	3 cut(s)	36, 96, 390
BsaWI	WCCGGW	1 cut(s)	890
BsaXI	ACNNNNNCTCC	4 cut(s)	329, 359, 949, 979
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 391, 548
Bse118I	RCCGGY	2 cut(s)	22, 952
Bse1I	ACTGG	4 cut(s)	224, 490, 728, 1022
Bse21I	CCTNAGG	1 cut(s)	544
BseDI	CCNNGG	3 cut(s)	36, 96, 390
BseGI	GGATG	2 cut(s)	46, 92
BseLI	CCNNNNNNNGG	3 cut(s)	257, 391, 548
BseMII	CTCAG	3 cut(s)	558, 812, 848
BseNI	ACTGG	4 cut(s)	224, 490, 728, 1022
BseRI	GAGGAG	5 cut(s)	72, 75, 909, 912, 1005
BseXI	GCAGC	5 cut(s)	196, 251, 748, 895, 1069
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	4 cut(s)	101, 344, 411, 528
BsiHKCI	CYCGRG	1 cut(s)	824
BsiSI	CCGG	7 cut(s)	23, 107, 268, 333, 558, 891, 953
BslFI	GGGAC	2 cut(s)	233, 679
BslI	CCNNNNNNNGG	3 cut(s)	257, 391, 548
BsmAI	GTCTC	2 cut(s)	365, 801
BsmBI	CGTCTC	1 cut(s)	801
BsmFI	GGGAC	2 cut(s)	233, 679
BsnI	GGCC	4 cut(s)	101, 344, 411, 528
Bso31I	GGTCTC	1 cut(s)	365
BsoBI	CYCGRG	1 cut(s)	824
Bsp119I	TTCGAA	1 cut(s)	872
Bsp143I	GATC	3 cut(s)	65, 538, 820
Bsp19I	CCATGG	1 cut(s)	390
BspANI	GGCC	4 cut(s)	101, 344, 411, 528
BspCNI	CTCAG	3 cut(s)	557, 811, 847
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	102
BspMAI	CTGCAG	1 cut(s)	212
BspMI	ACCTGC	1 cut(s)	215
BspPI	GGATC	2 cut(s)	73, 533
BspT104I	TTCGAA	1 cut(s)	872
BspTNI	GGTCTC	1 cut(s)	365
BsrFI	RCCGGY	2 cut(s)	22, 952
BsrI	ACTGG	4 cut(s)	224, 490, 728, 1022
BssAI	RCCGGY	2 cut(s)	22, 952
BssECI	CCNNGG	3 cut(s)	36, 96, 390
BssMI	GATC	3 cut(s)	65, 538, 820
BssT1I	CCWWGG	2 cut(s)	96, 390
Bst4CI	ACNGT	4 cut(s)	506, 653, 977, 1067
BstBI	TTCGAA	1 cut(s)	872
BstC8I	GCNNGC	4 cut(s)	24, 36, 114, 212
BstDEI	CTNAG	4 cut(s)	544, 698, 798, 834
BstDSI	CCRYGG	2 cut(s)	36, 390
BstF5I	GGATG	2 cut(s)	46, 92
BstFNI	CGCG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	845
BstHHI	GCGC	1 cut(s)	844
BstKTI	GATC	3 cut(s)	68, 541, 823
BstMAI	GTCTC	2 cut(s)	365, 801
BstMBI	GATC	3 cut(s)	65, 538, 820
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 609, 618, 742
BstSCI	CCNGG	1 cut(s)	557
BstSFI	CTRYAG	3 cut(s)	172, 208, 310
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	5 cut(s)	196, 251, 748, 895, 1069
Bsu36I	CCTNAGG	1 cut(s)	544
BsuRI	GGCC	4 cut(s)	101, 344, 411, 528
BtgI	CCRYGG	2 cut(s)	36, 390
BtsCI	GGATG	2 cut(s)	46, 92
BtsI	GCAGTG	1 cut(s)	610
BtsIMutI	CAGTG	4 cut(s)	610, 721, 982, 1072
BveI	ACCTGC	1 cut(s)	215
Cac8I	GCNNGC	4 cut(s)	24, 36, 114, 212
CaiI	CAGNNNCTG	2 cut(s)	745, 862
CfoI	GCGC	1 cut(s)	844
Cfr10I	RCCGGY	2 cut(s)	22, 952
Cfr13I	GGNCC	2 cut(s)	100, 222
Cfr42I	CCGCGG	1 cut(s)	39
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	762
CviAII	CATG	6 cut(s)	355, 391, 646, 658, 751, 1028
CviQI	GTAC	1 cut(s)	762
DdeI	CTNAG	4 cut(s)	544, 698, 798, 834
DpnI	GATC	3 cut(s)	67, 540, 822
DpnII	GATC	3 cut(s)	65, 538, 820
DrdI	GACNNNNNNGTC	1 cut(s)	793
DseDI	GACNNNNNNGTC	1 cut(s)	793
EciI	GGCGGA	2 cut(s)	246, 933
Eco130I	CCWWGG	2 cut(s)	96, 390
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	435
Eco81I	CCTNAGG	1 cut(s)	544
Eco88I	CYCGRG	1 cut(s)	824
EcoO109I	RGGNCCY	1 cut(s)	100
EcoT14I	CCWWGG	2 cut(s)	96, 390
ErhI	CCWWGG	2 cut(s)	96, 390
Esp3I	CGTCTC	1 cut(s)	801
FaeI	CATG	6 cut(s)	358, 394, 649, 661, 754, 1031
FaqI	GGGAC	2 cut(s)	233, 679
FatI	CATG	6 cut(s)	354, 390, 645, 657, 750, 1027
FauI	CCCGC	5 cut(s)	43, 111, 394, 614, 1003
FblI	GTMKAC	1 cut(s)	887
FokI	GGATG	2 cut(s)	53, 79
FspBI	CTAG	2 cut(s)	423, 1078
GlaI	GCGC	1 cut(s)	843
GsuI	CTGGAG	1 cut(s)	884
HaeII	RGCGCY	1 cut(s)	845
HaeIII	GGCC	4 cut(s)	101, 344, 411, 528
HapII	CCGG	7 cut(s)	23, 107, 268, 333, 558, 891, 953
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	844
Hin1II	CATG	6 cut(s)	358, 394, 649, 661, 754, 1031
Hin6I	GCGC	1 cut(s)	842
HinP1I	GCGC	1 cut(s)	842
HpaII	CCGG	7 cut(s)	23, 107, 268, 333, 558, 891, 953
HphI	GGTGA	3 cut(s)	518, 967, 1061
Hpy166II	GTNNAC	1 cut(s)	888
Hpy188I	TCNGA	8 cut(s)	13, 129, 349, 786, 801, 837, 858, 969
Hpy188III	TCNNGA	5 cut(s)	300, 536, 824, 826, 863
Hpy8I	GTNNAC	1 cut(s)	888
Hpy99I	CGWCG	1 cut(s)	916
HpyAV	CCTTC	2 cut(s)	450, 728
HpyCH4III	ACNGT	4 cut(s)	506, 653, 977, 1067
HpyCH4IV	ACGT	2 cut(s)	246, 510
HpyCH4V	TGCA	3 cut(s)	210, 811, 1057
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 609, 618, 742
HpyF3I	CTNAG	4 cut(s)	544, 698, 798, 834
HpySE526I	ACGT	2 cut(s)	246, 510
Hsp92II	CATG	6 cut(s)	358, 394, 649, 661, 754, 1031
HspAI	GCGC	1 cut(s)	842
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
KspI	CCGCGG	1 cut(s)	39
Kzo9I	GATC	3 cut(s)	65, 538, 820
LmnI	GCTCC	3 cut(s)	109, 233, 946
Lsp1109I	GCAGC	5 cut(s)	196, 251, 748, 895, 1069
MaeI	CTAG	2 cut(s)	423, 1078
MaeII	ACGT	2 cut(s)	246, 510
MaeIII	GTNAC	7 cut(s)	215, 237, 460, 506, 517, 955, 1013
MalI	GATC	3 cut(s)	67, 540, 822
MboI	GATC	3 cut(s)	65, 538, 820
MboII	GAAGA	5 cut(s)	288, 435, 438, 441, 675
MluCI	AATT	1 cut(s)	728
MlyI	GAGTC	7 cut(s)	297, 314, 323, 332, 526, 701, 893
MmeI	TCCRAC	3 cut(s)	36, 372, 992
MreI	CGCCGGCG	1 cut(s)	22
MroNI	GCCGGC	1 cut(s)	22
MseI	TTAA	1 cut(s)	582
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	7 cut(s)	23, 107, 268, 333, 558, 891, 953
MspR9I	CCNGG	1 cut(s)	559
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	4 cut(s)	78, 609, 618, 742
NaeI	GCCGGC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	559
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	3 cut(s)	65, 538, 820
NgoMIV	GCCGGC	1 cut(s)	22
NlaIII	CATG	6 cut(s)	358, 394, 649, 661, 754, 1031
NlaIV	GGNNCC	1 cut(s)	102
NmeAIII	GCCGAG	2 cut(s)	320, 384
NmuCI	GTSAC	2 cut(s)	506, 955
NspV	TTCGAA	1 cut(s)	872
PaeR7I	CTCGAG	1 cut(s)	824
PdiI	GCCGGC	1 cut(s)	24
PfeI	GAWTC	3 cut(s)	137, 426, 859
PfoI	TCCNGGA	1 cut(s)	557
PleI	GAGTC	7 cut(s)	297, 314, 323, 332, 526, 700, 892
PpsI	GAGTC	7 cut(s)	297, 314, 323, 332, 526, 700, 892
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	2 cut(s)	100, 222
PstI	CTGCAG	1 cut(s)	212
PstNI	CAGNNNCTG	2 cut(s)	745, 862
RsaI	GTAC	1 cut(s)	763
RsaNI	GTAC	1 cut(s)	762
SacII	CCGCGG	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	582
Sau3AI	GATC	3 cut(s)	65, 538, 820
Sau96I	GGNCC	2 cut(s)	100, 222
SbfI	CCTGCAGG	1 cut(s)	212
SchI	GAGTC	7 cut(s)	297, 314, 323, 332, 526, 701, 893
ScrFI	CCNGG	1 cut(s)	559
SdaI	CCTGCAGG	1 cut(s)	212
SetI	ASST	8 cut(s)	209, 249, 290, 405, 513, 550, 720, 964
SfcI	CTRYAG	3 cut(s)	172, 208, 310
Sfr274I	CTCGAG	1 cut(s)	824
Sfr303I	CCGCGG	1 cut(s)	39
SfuI	TTCGAA	1 cut(s)	872
SgrAI	CRCCGGYG	2 cut(s)	22, 952
SgrBI	CCGCGG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	222
SlaI	CTCGAG	1 cut(s)	824
SmlI	CTYRAG	3 cut(s)	119, 362, 824
SmoI	CTYRAG	3 cut(s)	119, 362, 824
Sse8387I	CCTGCAGG	1 cut(s)	212
Sse9I	AATT	1 cut(s)	728
SspMI	CTAG	2 cut(s)	423, 1078
StyD4I	CCNGG	1 cut(s)	557
StyI	CCWWGG	2 cut(s)	96, 390
TaaI	ACNGT	4 cut(s)	506, 653, 977, 1067
TaiI	ACGT	2 cut(s)	249, 513
TaqI	TCGA	3 cut(s)	318, 825, 872
TasI	AATT	1 cut(s)	728
TauI	GCSGC	7 cut(s)	81, 264, 411, 615, 618, 621, 984
TfiI	GAWTC	3 cut(s)	137, 426, 859
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	4 cut(s)	610, 728, 982, 1072
TseFI	GTSAC	2 cut(s)	506, 955
TseI	GCWGC	5 cut(s)	184, 264, 736, 908, 1057
Tsp45I	GTSAC	2 cut(s)	506, 955
TspDTI	ATGAA	3 cut(s)	656, 662, 830
TspGWI	ACGGA	2 cut(s)	929, 1002
TspRI	CASTG	4 cut(s)	610, 728, 982, 1072
VpaK11BI	GGWCC	1 cut(s)	222
XhoI	CTCGAG	1 cut(s)	824
XmiI	GTMKAC	1 cut(s)	887
XspI	CTAG	2 cut(s)	423, 1078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.