Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014026

Physical Location & Seq

Genomic Coordinates Forward (+)

21855793 .. 21856866

Gene Structure 1074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017829

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTCCTCCGACAACACGCCGGCGAAAAAGCCGGCAGACGACACCCAACAAGGAGGAGGAGGATCAGGCAACAGCCGCAAAACGACATCGTCCAAGGCCCCACCGGAGCAAGCCCTCAAGTGTCCGAGATGTGATTCCCCCAACACAAAGTTCTGCTACTACAACAACTACAGCCTGACGCAGCCCAGACACTTCTGTAAGACCTGCAGGCGTTACTGGACCAAAGGCGGAGCGTTACGCAACGTCCCCATAGGCGGCGGCTGCCGGAAAAACAAGAGAGTGAGGTCGTCATCTTCCCGACTCTCCTGCAGCCTCGACTCCAAAGACTCCAGCGACTCGGCCTCTGACCACATGGGTCTCAAGTTCTTTCACGGCATTTCCCCAGCCATGGATTTCCAGCTCGGCGGCCTCTCCTTGCCTAGACTCAACCACCACCCTTCTTCTTCTTCAGCAGTTGTAACCGCCCTTTACAATAACAACAACAACCAGTTCTCTCCATACGGTGACGTTTCGGTTACTTCTGGCCTGACTCTTGATCCCTCAGGTGGTGCTTCAGGGAATAGTTCCTTTATGGGTTTTAACTATCCTCTCACTTTAGGCAGTGGAAGCGGCGGCGGGGTTGGGTTTCAACAGAACAACATGAACAGTTCCATGAGTGTTCATAGCAGTCTTGCTTCTTCTATTGAGTCCCTTAGTTCTATCAACCAAGACCTTCACTGGAAATTACAGCAGCAGAGGCTGTCCATGTTGTTTGGTACTACGATCGCCGGAGATAGTCAGACACAGCCGTCTCAGAAAGATATGCAGATGAATGATCTCGAGAAAACTCAGACAGCACCTATTTTGTTTCAGAATCTGGAGATTTCGAAACCGAAAGAGTCTACCGGAGGAGGAGATACGGCTGCGACGGAGTGGTTCTTTGGGAACTCTTACGCGCCGCCACCGCCGGTGACACCTACTCCGACAAACAGTGGTGGCAACGGAGGAGGAAACGAGAACAATGCGGGTAACTGGAATACTCATGGAGTTGTTCAAGCGTGGGGTGATTTGCAGCAATACAATGCCTTGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009838 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010118 GO:0010227 GO:0010374 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032881 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902066 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

358

Amino Acids

38.01

Weight (kDa)

8.77

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	37 - 93	2.2e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65590
fragaria_vesca	FvH4_1g19310
malus_domestica	MD01G1041500.v1.1 MD15G1309400.v1.1
prunus_persica	Prupe.6G205200_v2.0.a1
pyrus_communis	pycom01g06920 pycom15g27370
rosa_chinensis	RchiOBHm_Chr2g0110671
rosa_laevigata	RLG00000017829
rosa_multiflora	Rmu_sc0000389.1_g000038
rosa_roxburghii	Rroxscaffold_2G00133050
rosa_rugosa	Rorug02G0168500.1
rosa_samantha	Rh2AG220800 Rh2BG230900 Rh2CG223200 Rh2DG227000
rosa_wichuraiana	Rw2G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	787
Acc36I	ACCTGC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	881
AccII	CGCG	1 cut(s)	935
AclWI	GGATC	2 cut(s)	70, 530
AcuI	CTGAAG	2 cut(s)	432, 537
AfaI	GTAC	1 cut(s)	757
AfiI	CCNNNNNNNGG	3 cut(s)	254, 388, 545
AgsI	TTSAA	2 cut(s)	629, 1034
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AluBI	AGCT	1 cut(s)	400
AluI	AGCT	1 cut(s)	400
Alw26I	GTCTC	2 cut(s)	362, 795
AlwI	GGATC	2 cut(s)	70, 530
AlwNI	CAGNNNCTG	2 cut(s)	739, 856
Ama87I	CYCGRG	1 cut(s)	818
AoxI	GGCC	4 cut(s)	96, 339, 406, 523
ApeKI	GCWGC	6 cut(s)	181, 261, 309, 730, 902, 1051
AspLEI	GCGC	1 cut(s)	937
AspS9I	GGNCC	2 cut(s)	97, 219
AsuHPI	GGTGA	3 cut(s)	515, 961, 1055
AsuII	TTCGAA	1 cut(s)	866
AvaI	CYCGRG	1 cut(s)	818
AvaII	GGWCC	1 cut(s)	219
AxyI	CCTNAGG	1 cut(s)	541
BbvI	GCAGC	6 cut(s)	193, 248, 321, 742, 889, 1063
BceAI	ACGGC	3 cut(s)	388, 772, 915
BcgI	CGANNNNNNTGC	4 cut(s)	288, 322, 983, 1017
BcoDI	GTCTC	2 cut(s)	362, 795
BfaI	CTAG	2 cut(s)	420, 1072
BfmI	CTRYAG	3 cut(s)	169, 205, 307
BfuAI	ACCTGC	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	219
BmeT110I	CYCGRG	1 cut(s)	818
BmgT120I	GGNCC	2 cut(s)	97, 219
BmiI	GGNNCC	1 cut(s)	99
BpmI	CTGGAG	2 cut(s)	313, 878
Bpu14I	TTCGAA	1 cut(s)	866
BpuEI	CTTGAG	2 cut(s)	101, 344
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	93, 387
BsaWI	WCCGGW	2 cut(s)	103, 884
BsaXI	ACNNNNNCTCC	2 cut(s)	943, 973
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 388, 545
Bse118I	RCCGGY	3 cut(s)	19, 31, 946
Bse1I	ACTGG	4 cut(s)	221, 487, 722, 1016
Bse21I	CCTNAGG	1 cut(s)	541
BseDI	CCNNGG	2 cut(s)	93, 387
BseLI	CCNNNNNNNGG	3 cut(s)	254, 388, 545
BseMII	CTCAG	3 cut(s)	555, 806, 842
BseNI	ACTGG	4 cut(s)	221, 487, 722, 1016
BseRI	GAGGAG	5 cut(s)	69, 72, 903, 906, 999
BseXI	GCAGC	6 cut(s)	193, 248, 321, 742, 889, 1063
BseYI	CCCAGC	1 cut(s)	382
Bsh1236I	CGCG	1 cut(s)	935
Bsh1285I	CGRYCG	1 cut(s)	765
BshFI	GGCC	4 cut(s)	98, 341, 408, 525
BsiEI	CGRYCG	1 cut(s)	765
BsiHKCI	CYCGRG	1 cut(s)	818
BsiSI	CCGG	7 cut(s)	20, 32, 104, 265, 768, 885, 947
BslFI	GGGAC	2 cut(s)	230, 673
BslI	CCNNNNNNNGG	3 cut(s)	254, 388, 545
BsmAI	GTCTC	2 cut(s)	362, 795
BsmBI	CGTCTC	1 cut(s)	795
BsmFI	GGGAC	2 cut(s)	230, 673
BsnI	GGCC	4 cut(s)	98, 341, 408, 525
Bso31I	GGTCTC	1 cut(s)	362
BsoBI	CYCGRG	1 cut(s)	818
Bsp119I	TTCGAA	1 cut(s)	866
Bsp143I	GATC	4 cut(s)	62, 535, 762, 814
Bsp19I	CCATGG	1 cut(s)	387
BspANI	GGCC	4 cut(s)	98, 341, 408, 525
BspCNI	CTCAG	3 cut(s)	554, 805, 841
BspFNI	CGCG	1 cut(s)	935
BspLI	GGNNCC	1 cut(s)	99
BspMAI	CTGCAG	2 cut(s)	209, 311
BspMI	ACCTGC	1 cut(s)	212
BspPI	GGATC	2 cut(s)	70, 530
BspT104I	TTCGAA	1 cut(s)	866
BspTNI	GGTCTC	1 cut(s)	362
BsrFI	RCCGGY	3 cut(s)	19, 31, 946
BsrI	ACTGG	4 cut(s)	221, 487, 722, 1016
BssAI	RCCGGY	3 cut(s)	19, 31, 946
BssECI	CCNNGG	2 cut(s)	93, 387
BssMI	GATC	4 cut(s)	62, 535, 762, 814
BssT1I	CCWWGG	2 cut(s)	93, 387
Bst4CI	ACNGT	3 cut(s)	503, 647, 971
BstBI	TTCGAA	1 cut(s)	866
BstC8I	GCNNGC	4 cut(s)	21, 33, 111, 209
BstDEI	CTNAG	4 cut(s)	541, 692, 792, 828
BstDSI	CCRYGG	1 cut(s)	387
BstFNI	CGCG	1 cut(s)	935
BstHHI	GCGC	1 cut(s)	937
BstKTI	GATC	4 cut(s)	65, 538, 765, 817
BstMAI	GTCTC	2 cut(s)	362, 795
BstMBI	GATC	4 cut(s)	62, 535, 762, 814
BstMCI	CGRYCG	1 cut(s)	765
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 261, 606, 736, 943
BstSFI	CTRYAG	3 cut(s)	169, 205, 307
BstUI	CGCG	1 cut(s)	935
BstV1I	GCAGC	6 cut(s)	193, 248, 321, 742, 889, 1063
Bsu36I	CCTNAGG	1 cut(s)	541
BsuRI	GGCC	4 cut(s)	98, 341, 408, 525
BtgI	CCRYGG	1 cut(s)	387
BtsI	GCAGTG	1 cut(s)	607
BtsIMutI	CAGTG	3 cut(s)	607, 715, 976
BveI	ACCTGC	1 cut(s)	212
Cac8I	GCNNGC	4 cut(s)	21, 33, 111, 209
CaiI	CAGNNNCTG	2 cut(s)	739, 856
CfoI	GCGC	1 cut(s)	937
Cfr10I	RCCGGY	3 cut(s)	19, 31, 946
Cfr13I	GGNCC	2 cut(s)	97, 219
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	756
CviAII	CATG	6 cut(s)	352, 388, 640, 652, 745, 1022
CviQI	GTAC	1 cut(s)	756
DdeI	CTNAG	4 cut(s)	541, 692, 792, 828
DpnI	GATC	4 cut(s)	64, 537, 764, 816
DpnII	GATC	4 cut(s)	62, 535, 762, 814
DrdI	GACNNNNNNGTC	1 cut(s)	787
DseDI	GACNNNNNNGTC	1 cut(s)	787
EciI	GGCGGA	1 cut(s)	243
Eco130I	CCWWGG	2 cut(s)	93, 387
Eco31I	GGTCTC	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	219
Eco57I	CTGAAG	2 cut(s)	432, 537
Eco81I	CCTNAGG	1 cut(s)	541
Eco88I	CYCGRG	1 cut(s)	818
EcoO109I	RGGNCCY	1 cut(s)	97
EcoT14I	CCWWGG	2 cut(s)	93, 387
ErhI	CCWWGG	2 cut(s)	93, 387
Esp3I	CGTCTC	1 cut(s)	795
FaeI	CATG	6 cut(s)	355, 391, 643, 655, 748, 1025
FaqI	GGGAC	2 cut(s)	230, 673
FatI	CATG	6 cut(s)	351, 387, 639, 651, 744, 1021
FauI	CCCGC	2 cut(s)	608, 997
FblI	GTMKAC	1 cut(s)	881
FspBI	CTAG	2 cut(s)	420, 1072
GlaI	GCGC	1 cut(s)	936
GsaI	CCCAGC	1 cut(s)	386
GsuI	CTGGAG	2 cut(s)	313, 878
HaeIII	GGCC	4 cut(s)	98, 341, 408, 525
HapII	CCGG	7 cut(s)	20, 32, 104, 265, 768, 885, 947
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	937
Hin1II	CATG	6 cut(s)	355, 391, 643, 655, 748, 1025
Hin6I	GCGC	1 cut(s)	935
HinP1I	GCGC	1 cut(s)	935
HpaII	CCGG	7 cut(s)	20, 32, 104, 265, 768, 885, 947
HphI	GGTGA	3 cut(s)	515, 961, 1055
Hpy166II	GTNNAC	1 cut(s)	882
Hpy188I	TCNGA	8 cut(s)	10, 126, 346, 780, 795, 831, 852, 963
Hpy188III	TCNNGA	5 cut(s)	297, 533, 818, 820, 857
Hpy8I	GTNNAC	1 cut(s)	882
Hpy99I	CGWCG	1 cut(s)	910
HpyAV	CCTTC	2 cut(s)	447, 722
HpyCH4III	ACNGT	3 cut(s)	503, 647, 971
HpyCH4IV	ACGT	2 cut(s)	243, 507
HpyCH4V	TGCA	4 cut(s)	207, 309, 805, 1051
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 261, 606, 736, 943
HpyF3I	CTNAG	4 cut(s)	541, 692, 792, 828
HpySE526I	ACGT	2 cut(s)	243, 507
Hsp92II	CATG	6 cut(s)	355, 391, 643, 655, 748, 1025
HspAI	GCGC	1 cut(s)	935
KroI	GCCGGC	2 cut(s)	19, 31
KroNI	GCCGGC	2 cut(s)	21, 33
Kzo9I	GATC	4 cut(s)	62, 535, 762, 814
LmnI	GCTCC	2 cut(s)	106, 230
Lsp1109I	GCAGC	6 cut(s)	193, 248, 321, 742, 889, 1063
MaeI	CTAG	2 cut(s)	420, 1072
MaeII	ACGT	2 cut(s)	243, 507
MaeIII	GTNAC	7 cut(s)	212, 234, 457, 503, 514, 949, 1007
MalI	GATC	4 cut(s)	64, 537, 764, 816
MboI	GATC	4 cut(s)	62, 535, 762, 814
MboII	GAAGA	5 cut(s)	285, 432, 435, 438, 669
MluCI	AATT	1 cut(s)	722
MlyI	GAGTC	8 cut(s)	294, 311, 320, 329, 417, 523, 695, 887
MmeI	TCCRAC	2 cut(s)	33, 986
MreI	CGCCGGCG	1 cut(s)	19
MroNI	GCCGGC	2 cut(s)	19, 31
MseI	TTAA	1 cut(s)	579
MspI	CCGG	7 cut(s)	20, 32, 104, 265, 768, 885, 947
MvnI	CGCG	1 cut(s)	935
MwoI	GCNNNNNNNGC	5 cut(s)	75, 261, 606, 736, 943
NaeI	GCCGGC	2 cut(s)	21, 33
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	4 cut(s)	62, 535, 762, 814
NgoMIV	GCCGGC	2 cut(s)	19, 31
NlaIII	CATG	6 cut(s)	355, 391, 643, 655, 748, 1025
NlaIV	GGNNCC	1 cut(s)	99
NmeAIII	GCCGAG	2 cut(s)	317, 381
NmuCI	GTSAC	2 cut(s)	503, 949
NspV	TTCGAA	1 cut(s)	866
PaeR7I	CTCGAG	1 cut(s)	818
PdiI	GCCGGC	2 cut(s)	21, 33
PfeI	GAWTC	2 cut(s)	134, 853
PflFI	GACNNNGTC	1 cut(s)	88
Ple19I	CGATCG	1 cut(s)	765
PleI	GAGTC	8 cut(s)	294, 311, 320, 329, 417, 523, 694, 886
PpsI	GAGTC	8 cut(s)	294, 311, 320, 329, 417, 523, 694, 886
PspFI	CCCAGC	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	2 cut(s)	97, 219
PstI	CTGCAG	2 cut(s)	209, 311
PstNI	CAGNNNCTG	2 cut(s)	739, 856
PsyI	GACNNNGTC	1 cut(s)	88
PvuI	CGATCG	1 cut(s)	765
RsaI	GTAC	1 cut(s)	757
RsaNI	GTAC	1 cut(s)	756
SaqAI	TTAA	1 cut(s)	579
Sau3AI	GATC	4 cut(s)	62, 535, 762, 814
Sau96I	GGNCC	2 cut(s)	97, 219
SbfI	CCTGCAGG	1 cut(s)	209
SchI	GAGTC	8 cut(s)	294, 311, 320, 329, 417, 523, 695, 887
SdaI	CCTGCAGG	1 cut(s)	209
SetI	ASST	9 cut(s)	206, 246, 287, 402, 510, 547, 714, 841, 958
SfcI	CTRYAG	3 cut(s)	169, 205, 307
Sfr274I	CTCGAG	1 cut(s)	818
SfuI	TTCGAA	1 cut(s)	866
SgrAI	CRCCGGYG	2 cut(s)	19, 946
SinI	GGWCC	1 cut(s)	219
SlaI	CTCGAG	1 cut(s)	818
SmlI	CTYRAG	3 cut(s)	116, 359, 818
SmoI	CTYRAG	3 cut(s)	116, 359, 818
Sse8387I	CCTGCAGG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	722
SspMI	CTAG	2 cut(s)	420, 1072
StyI	CCWWGG	2 cut(s)	93, 387
TaaI	ACNGT	3 cut(s)	503, 647, 971
TaiI	ACGT	2 cut(s)	246, 510
TaqI	TCGA	3 cut(s)	315, 819, 866
TasI	AATT	1 cut(s)	722
TauI	GCSGC	7 cut(s)	78, 258, 261, 408, 612, 615, 940
TfiI	GAWTC	2 cut(s)	134, 853
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	3 cut(s)	607, 722, 976
TseFI	GTSAC	2 cut(s)	503, 949
TseI	GCWGC	6 cut(s)	181, 261, 309, 730, 902, 1051
Tsp45I	GTSAC	2 cut(s)	503, 949
TspDTI	ATGAA	3 cut(s)	650, 656, 824
TspGWI	ACGGA	2 cut(s)	923, 996
TspRI	CASTG	3 cut(s)	607, 722, 976
Tth111I	GACNNNGTC	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	219
XhoI	CTCGAG	1 cut(s)	818
XmiI	GTMKAC	1 cut(s)	881
XspI	CTAG	2 cut(s)	420, 1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.