MD01G1041500.v1.1

dof zinc finger protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
13899805 .. 13900965
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1041500.v1.1.491

Sequence Viewer

Length: 1161 bp
ATGTCCTCAGATGCCGCACCGCCGGCAAAGCTAAAAGACGACGAGAACCCAACAGGTGGATCAGGTAGCAGCCGGCCGAAAACCACATCATCATCGTCTTCGGGGCCAAAGCTGCCACCACCAGAGCAAGCCCTCAAGTGCCCGAGATGCGACTCACCCAACACCAAATTCTGCTACTATAACAACTACAGCCTCACGCAGCCACGCCACTTCTGCAAGACTTGCCGGAGATATTGGACCAAAGGCGGCGCTTTACGCAACGTCCCCATTGGCGGCGGCTGCCGGAAGAGCAAGAAAATCAGGTCCTCTTCATCCTCCAATTCCAGGCTCTCCTGCAGCTTCGACTCATCAAAAGACTCGGCCGGCTCTTCCTCCTCGGAGAATATGATGCTCGGCGGCTTGAAGTTCTTCCATGGCATTTCGCCTGCCATGGATTTTCAGCTCGGCAGCATATCTAGGCTCCATAACAACAACCAGTTCTCTTCAAACCCAGCAGCTGGGATTAATTTCAACAACCCATTTTCAGCTTTCGGAGACGTTTCGGGTATTTCCGGTTTGAATATTAGTACTCTTGAGCCATCAGCCGGTGGTGGGACAAACGCTTGTAATAATTCTTTTATGGGTTTTAATTATCCGCTCACTTTGGGCGGCGGTGGAGGCGGTGCTAGTGGTAGTGGTGGGCTAATTAGTACACAGAATATGATGAGTGCTATGAACGTGCACAGTAGCCTTGCGTCTTCTATCGAGTCTTTGAGTTCTATTAACCAAGACCTTCACTGGAAAATGCAGCAGCAGAGGCTGGCCATGTTGTTTGGTACGGAAGAGCATGACCAGTCAACTCATTCAACGCAGTCTCAGCTTGAAAACCAGCAGCAAACGCAGCAGATGATTACACCCATAAGCTTGTTTCAGAATCTGGAGGTATCATCATCCTCAAAACCTGATCATCATCAAGGTGTAAGTCATGGAAGAAAAGAAGGTGGGGATACCGCCACTGAGTGGTTCTTCGGGAACTCTTATGCACCACCAGTGACTCCGACTCCAACCAACAGTGGTGGTGGTGGTGGTGGCGCCGGAGGCAATGAGAACGCAAGCAACTGGCCTCATGGAATTCCAGCGTGGAGTAGTCATGATTTGCAGCAATACAATGCTTTACCCTAG

Protein Analysis

387

Amino Acids

40.75

Weight (kDa)

8.38

Isoelectric Point (pI)

55.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 43 - 99 1.8e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65590
fragaria_vesca FvH4_1g19310
malus_domestica MD01G1041500.v1.1 MD15G1309400.v1.1
prunus_persica Prupe.6G205200_v2.0.a1
pyrus_communis pycom01g06920 pycom15g27370
rosa_chinensis RchiOBHm_Chr2g0110671
rosa_laevigata RLG00000017829
rosa_multiflora Rmu_sc0000389.1_g000038
rosa_roxburghii Rroxscaffold_2G00133050
rosa_rugosa Rorug02G0168500.1
rosa_samantha Rh2AG220800 Rh2BG230900 Rh2CG223200 Rh2DG227000
rosa_wichuraiana Rw2G017030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1070
AccB7I CCANNNNNTGG 3 cut(s) 56, 497, 999
AccBSI CCGCTC 1 cut(s) 637
AclWI GGATC 1 cut(s) 67
AcoI YGGCCR 3 cut(s) 74, 360, 801
AcsI RAATTY 2 cut(s) 167, 1110
AcyI GRCGYC 1 cut(s) 1071
AdeI CACNNNGTG 1 cut(s) 999
AfaI GTAC 3 cut(s) 568, 691, 817
AfiI CCNNNNNNNGG 7 cut(s) 56, 272, 324, 497, 584, 591, 999
AgsI TTSAA 6 cut(s) 403, 486, 511, 559, 846, 863
AjnI CCWGG 1 cut(s) 323
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 8 cut(s) 31, 112, 339, 442, 497, 527, 859, 903
AluI AGCT 8 cut(s) 31, 112, 339, 442, 497, 527, 859, 903
Alw21I GWGCWC 1 cut(s) 723
Alw26I GTCTC 2 cut(s) 528, 858
Alw44I GTGCAC 1 cut(s) 719
AlwI GGATC 1 cut(s) 67
AlwNI CAGNNNCTG 3 cut(s) 497, 799, 916
Ama87I CYCGRG 1 cut(s) 142
AoxI GGCC 5 cut(s) 74, 104, 360, 801, 1100
ApaLI GTGCAC 1 cut(s) 719
ApoI RAATTY 2 cut(s) 167, 1110
AseI ATTAAT 1 cut(s) 504
Asp700I GAANNNNTTC 1 cut(s) 407
AspLEI GCGC 2 cut(s) 251, 1073
AspS9I GGNCC 3 cut(s) 104, 237, 303
AsuHPI GGTGA 1 cut(s) 147
AvaI CYCGRG 1 cut(s) 142
AvaII GGWCC 2 cut(s) 237, 303
BaeGI GKGCMC 2 cut(s) 143, 723
BalI TGGCCA 1 cut(s) 803
BanI GGYRCC 1 cut(s) 1070
BbsI GAAGAC 2 cut(s) 90, 729
Bbv12I GWGCWC 1 cut(s) 723
BccI CCATC 1 cut(s) 586
BciT130I CCWGG 1 cut(s) 325
BciVI GTATCC 1 cut(s) 979
BclI TGATCA 1 cut(s) 943
BcoDI GTCTC 2 cut(s) 528, 858
BfaI CTAG 3 cut(s) 456, 666, 1159
BfmI CTRYAG 2 cut(s) 187, 334
BfoI RGCGCY 2 cut(s) 252, 1074
BfuI GTATCC 1 cut(s) 979
BmcAI AGTACT 1 cut(s) 568
Bme1390I CCNGG 1 cut(s) 325
Bme18I GGWCC 2 cut(s) 237, 303
BmeT110I CYCGRG 1 cut(s) 142
BmgT120I GGNCC 3 cut(s) 104, 237, 303
BmiI GGNNCC 3 cut(s) 105, 461, 1072
BmrFI CCNGG 1 cut(s) 325
BmsI GCATC 2 cut(s) 137, 378
BpiI GAAGAC 2 cut(s) 90, 729
BpmI CTGGAG 1 cut(s) 938
BpuEI CTTGAG 2 cut(s) 119, 593
BsaBI GATNNNNATC 1 cut(s) 948
BsaHI GRCGYC 1 cut(s) 1071
BsaJI CCNNGG 3 cut(s) 375, 412, 429
BsaWI WCCGGW 1 cut(s) 551
BsaXI ACNNNNNCTCC 2 cut(s) 1024, 1054
Bsc4I CCNNNNNNNGG 7 cut(s) 56, 272, 324, 497, 584, 591, 999
Bse118I RCCGGY 4 cut(s) 22, 72, 362, 584
Bse1I ACTGG 5 cut(s) 475, 782, 832, 1028, 1103
Bse3DI GCAATG 1 cut(s) 1087
Bse8I GATNNNNATC 1 cut(s) 948
BseBI CCWGG 1 cut(s) 325
BseDI CCNNGG 3 cut(s) 375, 412, 429
BseGI GGATG 2 cut(s) 311, 929
BseJI GATNNNNATC 1 cut(s) 948
BseLI CCNNNNNNNGG 7 cut(s) 56, 272, 324, 497, 584, 591, 999
BseMI GCAATG 1 cut(s) 1087
BseMII CTCAG 3 cut(s) 21, 869, 987
BseNI ACTGG 5 cut(s) 475, 782, 832, 1028, 1103
BseRI GAGGAG 1 cut(s) 364
BseSI GKGCMC 2 cut(s) 143, 723
BseX3I CGGCCG 2 cut(s) 74, 360
BseYI CCCAGC 2 cut(s) 490, 497
Bsh1285I CGRYCG 2 cut(s) 77, 363
BshFI GGCC 5 cut(s) 76, 106, 362, 803, 1102
BshNI GGYRCC 1 cut(s) 1070
BsiEI CGRYCG 2 cut(s) 77, 363
BsiHKAI GWGCWC 1 cut(s) 723
BsiHKCI CYCGRG 1 cut(s) 142
BsiSI CCGG 8 cut(s) 23, 73, 226, 283, 363, 552, 585, 1074
BslFI GGGAC 2 cut(s) 248, 607
BslI CCNNNNNNNGG 7 cut(s) 56, 272, 324, 497, 584, 591, 999
BsmAI GTCTC 2 cut(s) 528, 858
BsmBI CGTCTC 1 cut(s) 528
BsmFI GGGAC 2 cut(s) 248, 607
BsnI GGCC 5 cut(s) 76, 106, 362, 803, 1102
BsoBI CYCGRG 1 cut(s) 142
Bsp1286I GDGCHC 2 cut(s) 143, 723
Bsp143I GATC 2 cut(s) 59, 943
Bsp19I CCATGG 2 cut(s) 412, 429
BspANI GGCC 5 cut(s) 76, 106, 362, 803, 1102
BspCNI CTCAG 3 cut(s) 20, 868, 988
BspHI TCATGA 1 cut(s) 1129
BspLI GGNNCC 3 cut(s) 105, 461, 1072
BspMAI CTGCAG 1 cut(s) 338
BspPI GGATC 1 cut(s) 67
BspQI GCTCTTC 3 cut(s) 281, 373, 816
BspT107I GGYRCC 1 cut(s) 1070
BsrBI CCGCTC 1 cut(s) 637
BsrDI GCAATG 1 cut(s) 1087
BsrFI RCCGGY 4 cut(s) 22, 72, 362, 584
BsrI ACTGG 5 cut(s) 475, 782, 832, 1028, 1103
BssAI RCCGGY 4 cut(s) 22, 72, 362, 584
BssECI CCNNGG 3 cut(s) 375, 412, 429
BssMI GATC 2 cut(s) 59, 943
BssNI GRCGYC 1 cut(s) 1071
BssT1I CCWWGG 2 cut(s) 412, 429
Bst2UI CCWGG 1 cut(s) 325
Bst4CI ACNGT 2 cut(s) 725, 1052
Bst6I CTCTTC 5 cut(s) 281, 313, 373, 487, 816
BstACI GRCGYC 1 cut(s) 1071
BstAPI GCANNNNNTGC 1 cut(s) 222
BstC8I GCNNGC 7 cut(s) 24, 74, 129, 364, 426, 801, 1093
BstDEI CTNAG 3 cut(s) 7, 855, 996
BstDSI CCRYGG 2 cut(s) 412, 429
BstF5I GGATG 2 cut(s) 311, 929
BstH2I RGCGCY 2 cut(s) 252, 1074
BstHHI GCGC 2 cut(s) 251, 1073
BstKTI GATC 2 cut(s) 62, 946
BstMAI GTCTC 2 cut(s) 528, 858
BstMBI GATC 2 cut(s) 59, 943
BstMCI CGRYCG 2 cut(s) 77, 363
BstNI CCWGG 1 cut(s) 325
BstSCI CCNGG 1 cut(s) 323
BstSFI CTRYAG 2 cut(s) 187, 334
BstSLI GKGCMC 2 cut(s) 143, 723
BstV2I GAAGAC 2 cut(s) 90, 729
BstZI CGGCCG 2 cut(s) 74, 360
BsuI GTATCC 1 cut(s) 979
BsuRI GGCC 5 cut(s) 76, 106, 362, 803, 1102
BtgI CCRYGG 2 cut(s) 412, 429
BtsCI GGATG 2 cut(s) 311, 929
BtsIMutI CAGTG 4 cut(s) 775, 993, 1035, 1057
Cac8I GCNNGC 7 cut(s) 24, 74, 129, 364, 426, 801, 1093
CaiI CAGNNNCTG 3 cut(s) 497, 799, 916
CciI TCATGA 1 cut(s) 1129
CfoI GCGC 2 cut(s) 251, 1073
Cfr10I RCCGGY 4 cut(s) 22, 72, 362, 584
Cfr13I GGNCC 3 cut(s) 104, 237, 303
CseI GACGC 1 cut(s) 723
Csp6I GTAC 3 cut(s) 567, 690, 816
CspCI CAANNNNNGTGG 2 cut(s) 1036, 1071
CviAII CATG 7 cut(s) 413, 430, 805, 827, 965, 1106, 1130
CviQI GTAC 3 cut(s) 567, 690, 816
DdeI CTNAG 3 cut(s) 7, 855, 996
DinI GGCGCC 1 cut(s) 1072
DpnI GATC 2 cut(s) 61, 945
DpnII GATC 2 cut(s) 59, 943
DraIII CACNNNGTG 1 cut(s) 999
EaeI YGGCCR 3 cut(s) 74, 360, 801
EagI CGGCCG 2 cut(s) 74, 360
Eam1104I CTCTTC 5 cut(s) 281, 313, 373, 487, 816
EarI CTCTTC 5 cut(s) 281, 313, 373, 487, 816
EclXI CGGCCG 2 cut(s) 74, 360
Eco130I CCWWGG 2 cut(s) 412, 429
Eco47I GGWCC 2 cut(s) 237, 303
Eco52I CGGCCG 2 cut(s) 74, 360
Eco88I CYCGRG 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 303
EcoRI GAATTC 1 cut(s) 1110
EcoRII CCWGG 1 cut(s) 323
EcoT14I CCWWGG 2 cut(s) 412, 429
EgeI GGCGCC 1 cut(s) 1072
EheI GGCGCC 1 cut(s) 1072
ErhI CCWWGG 2 cut(s) 412, 429
Esp3I CGTCTC 1 cut(s) 528
FaeI CATG 7 cut(s) 416, 433, 808, 830, 968, 1109, 1133
FaqI GGGAC 2 cut(s) 248, 607
FatI CATG 7 cut(s) 412, 429, 804, 826, 964, 1105, 1129
FbaI TGATCA 1 cut(s) 943
FokI GGATG 2 cut(s) 298, 916
FspBI CTAG 3 cut(s) 456, 666, 1159
GlaI GCGC 2 cut(s) 250, 1072
GsaI CCCAGC 2 cut(s) 494, 501
GsuI CTGGAG 1 cut(s) 938
HaeII RGCGCY 2 cut(s) 252, 1074
HaeIII GGCC 5 cut(s) 76, 106, 362, 803, 1102
HapII CCGG 8 cut(s) 23, 73, 226, 283, 363, 552, 585, 1074
HgaI GACGC 1 cut(s) 723
HhaI GCGC 2 cut(s) 251, 1073
Hin1I GRCGYC 1 cut(s) 1071
Hin1II CATG 7 cut(s) 416, 433, 808, 830, 968, 1109, 1133
Hin6I GCGC 2 cut(s) 249, 1071
HinP1I GCGC 2 cut(s) 249, 1071
HincII GTYRAC 1 cut(s) 837
HindII GTYRAC 1 cut(s) 837
HindIII AAGCTT 1 cut(s) 901
HinfI GANTC 7 cut(s) 152, 344, 356, 746, 913, 1033, 1039
HpaII CCGG 8 cut(s) 23, 73, 226, 283, 363, 552, 585, 1074
HphI GGTGA 1 cut(s) 147
Hpy166II GTNNAC 3 cut(s) 692, 721, 837
Hpy188I TCNGA 5 cut(s) 10, 379, 533, 912, 1038
Hpy188III TCNNGA 4 cut(s) 572, 917, 1009, 1130
Hpy8I GTNNAC 3 cut(s) 692, 721, 837
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 2 cut(s) 782, 971
HpyCH4III ACNGT 2 cut(s) 725, 1052
HpyCH4IV ACGT 3 cut(s) 261, 537, 717
HpyCH4V TGCA 6 cut(s) 216, 336, 721, 787, 1022, 1138
HpyF3I CTNAG 3 cut(s) 7, 855, 996
HpySE526I ACGT 3 cut(s) 261, 537, 717
Hsp92I GRCGYC 1 cut(s) 1071
Hsp92II CATG 7 cut(s) 416, 433, 808, 830, 968, 1109, 1133
HspAI GCGC 2 cut(s) 249, 1071
KasI GGCGCC 1 cut(s) 1070
KroI GCCGGC 3 cut(s) 22, 72, 362
KroNI GCCGGC 3 cut(s) 24, 74, 364
Ksp22I TGATCA 1 cut(s) 943
Kzo9I GATC 2 cut(s) 59, 943
LguI GCTCTTC 3 cut(s) 281, 373, 816
LmnI GCTCC 1 cut(s) 465
LweI GCATC 2 cut(s) 137, 378
MaeI CTAG 3 cut(s) 456, 666, 1159
MaeII ACGT 3 cut(s) 261, 537, 717
MaeIII GTNAC 1 cut(s) 1030
MalI GATC 2 cut(s) 61, 945
MbiI CCGCTC 1 cut(s) 637
MboI GATC 2 cut(s) 59, 943
MhlI GDGCHC 2 cut(s) 143, 723
MlsI TGGCCA 1 cut(s) 803
MluCI AATT 7 cut(s) 167, 319, 505, 610, 628, 684, 1110
MluNI TGGCCA 1 cut(s) 803
Mly113I GGCGCC 1 cut(s) 1071
MlyI GAGTC 6 cut(s) 146, 338, 350, 755, 1027, 1033
MmeI TCCRAC 2 cut(s) 1061, 1067
Mox20I TGGCCA 1 cut(s) 803
MroNI GCCGGC 3 cut(s) 22, 72, 362
MroXI GAANNNNTTC 1 cut(s) 407
MscI TGGCCA 1 cut(s) 803
MseI TTAA 3 cut(s) 504, 627, 762
MslI CAYNNNNRTG 1 cut(s) 954
Msp20I TGGCCA 1 cut(s) 803
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 8 cut(s) 23, 73, 226, 283, 363, 552, 585, 1074
MspR9I CCNGG 1 cut(s) 325
MvaI CCWGG 1 cut(s) 325
NaeI GCCGGC 3 cut(s) 24, 74, 364
NarI GGCGCC 1 cut(s) 1071
NcoI CCATGG 2 cut(s) 412, 429
NdeII GATC 2 cut(s) 59, 943
NgoMIV GCCGGC 3 cut(s) 22, 72, 362
NlaIII CATG 7 cut(s) 416, 433, 808, 830, 968, 1109, 1133
NlaIV GGNNCC 3 cut(s) 105, 461, 1072
NmeAIII GCCGAG 3 cut(s) 338, 372, 423
NmuCI GTSAC 1 cut(s) 1030
PagI TCATGA 1 cut(s) 1129
PciSI GCTCTTC 3 cut(s) 281, 373, 816
PdiI GCCGGC 3 cut(s) 24, 74, 364
PdmI GAANNNNTTC 1 cut(s) 407
PfeI GAWTC 1 cut(s) 913
PflMI CCANNNNNTGG 3 cut(s) 56, 497, 999
PleI GAGTC 6 cut(s) 146, 338, 350, 754, 1027, 1033
PluTI GGCGCC 1 cut(s) 1074
PpsI GAGTC 6 cut(s) 146, 338, 350, 754, 1027, 1033
PpuMI RGGWCCY 1 cut(s) 303
PshBI ATTAAT 1 cut(s) 504
Psp5II RGGWCCY 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 323
PspFI CCCAGC 2 cut(s) 490, 497
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 3 cut(s) 105, 461, 1072
PspPI GGNCC 3 cut(s) 104, 237, 303
PspPPI RGGWCCY 1 cut(s) 303
PstI CTGCAG 1 cut(s) 338
PstNI CAGNNNCTG 3 cut(s) 497, 799, 916
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 3 cut(s) 568, 691, 817
RsaNI GTAC 3 cut(s) 567, 690, 816
RseI CAYNNNNRTG 1 cut(s) 954
SapI GCTCTTC 3 cut(s) 281, 373, 816
SaqAI TTAA 3 cut(s) 504, 627, 762
Sau3AI GATC 2 cut(s) 59, 943
Sau96I GGNCC 3 cut(s) 104, 237, 303
ScaI AGTACT 1 cut(s) 568
SchI GAGTC 6 cut(s) 146, 338, 350, 755, 1027, 1033
ScrFI CCNGG 1 cut(s) 325
SduI GDGCHC 2 cut(s) 143, 723
SfaNI GCATC 2 cut(s) 137, 378
SfcI CTRYAG 2 cut(s) 187, 334
SfoI GGCGCC 1 cut(s) 1072
SinI GGWCC 2 cut(s) 237, 303
SmiMI CAYNNNNRTG 1 cut(s) 954
SmlI CTYRAG 2 cut(s) 134, 572
SmoI CTYRAG 2 cut(s) 134, 572
Sse9I AATT 7 cut(s) 167, 319, 505, 610, 628, 684, 1110
SspDI GGCGCC 1 cut(s) 1070
SspI AATATT 1 cut(s) 562
SspMI CTAG 3 cut(s) 456, 666, 1159
StyD4I CCNGG 1 cut(s) 323
StyI CCWWGG 2 cut(s) 412, 429
TaaI ACNGT 2 cut(s) 725, 1052
TaiI ACGT 3 cut(s) 264, 540, 720
TaqI TCGA 2 cut(s) 342, 744
TasI AATT 7 cut(s) 167, 319, 505, 610, 628, 684, 1110
TatI WGTACW 2 cut(s) 566, 689
TauI GCSGC 6 cut(s) 17, 249, 276, 279, 399, 651
TfiI GAWTC 1 cut(s) 913
Tru1I TTAA 3 cut(s) 504, 627, 762
Tru9I TTAA 3 cut(s) 504, 627, 762
TscAI CASTG 4 cut(s) 782, 1000, 1035, 1057
TseFI GTSAC 1 cut(s) 1030
Tsp45I GTSAC 1 cut(s) 1030
TspDTI ATGAA 2 cut(s) 300, 728
TspGWI ACGGA 1 cut(s) 833
TspRI CASTG 4 cut(s) 782, 1000, 1035, 1057
Van91I CCANNNNNTGG 3 cut(s) 56, 497, 999
VneI GTGCAC 1 cut(s) 719
VpaK11BI GGWCC 2 cut(s) 237, 303
VspI ATTAAT 1 cut(s) 504
XapI RAATTY 2 cut(s) 167, 1110
XmnI GAANNNNTTC 1 cut(s) 407
XspI CTAG 3 cut(s) 456, 666, 1159
ZrmI AGTACT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.