Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014026

Physical Location & Seq

Genomic Coordinates Forward (+)

11521386 .. 11523646

Gene Structure 2261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g19310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGATGTCCTCCGACAACTCGCCGGCGAAAAAGCAGGCCGACGACACCCAACAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAACAGGCAACAGCCGCAAAACGACGTCGTCCAAGGCCCCGCCGGAGCAAGCCCTCAAGTGTCCGAGATGTGATTCCCCTAACACAAAGTTCTGCTACTACAACAACTACAGCCTGACGCAGCCTCGACACTTCTGCAAGACCTGCAGGCGTTACTGGACCAAAGGGGGAGCGTTACGCAACGTCCCCATCGGCGGTGGCTGCCGCAAAAACAAGAGAGTCAGGTCTTCTTCTTCCCGACTATCCTGCAGCCTCGACTCTAAGGACTCCGGCGACTCGGCCTCTGACCACATGGGTCTCAAGTTCTTTCACGGCATTTCTCCAGCCATGGATTTCCAGCTCGGCGGCCTCTCCTTGCCTAGACTCAACCACCACCCTTCTTCTTCTTCAGCAGTTGTAACCGCTCTCTACAATAACAACAACAACAGCCAGTTCTCTCCATACGGCGACGTTTCGGTTACTTCTGGCCTGACGCTTGATCCCTCAGGCGGTGCTACTGGGAATAACTCCTTTATGGGTTTTAACTATCCTCTCACTTTAGGCAGTGGAAGCGGCGGCGGGGTTGGGTTTCATCAGAACAACATGAACACTGCCATGAATGTTCACAGCAGTCTTGCTTCTTCTATTGAGTCCCTTAGCTCTATCAACCAAGACCTTCACTGGAAATTACAGCAGCAGAGGCTGTCCATGTTGTTTGGTACTAGTATAGCCGGAGATAGTCAGACACAGCCGTCTCAGAAAGATTTGCAGATGAATGATCTCGAGAAAACTCAGACAGCAGCGCCTATTTTGTTTCAGAATCTGGAGATTTCGAAACCGAAAGAGTCTGCCGGAGGAGGAGATACGGCTGCGACGGAGTGGTTCTTTGGGAACTCTTATGCACCGCCGCCGGTGACACCTACTCCGACCAACAGTGGCGGCAACGGAGGAGGAAACGAGAACAATGCGGGTAACTGGAATAGTCATGGAGTTGTTCAAGCATGGGGTGATTTGCAGCAATACAATGCCTTGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009838 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010118 GO:0010227 GO:0010374 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032881 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902066 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

367

Amino Acids

38.6

Weight (kDa)

8.77

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	45 - 101	2.3e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65590
fragaria_vesca	FvH4_1g19310
malus_domestica	MD01G1041500.v1.1 MD15G1309400.v1.1
prunus_persica	Prupe.6G205200_v2.0.a1
pyrus_communis	pycom01g06920 pycom15g27370
rosa_chinensis	RchiOBHm_Chr2g0110671
rosa_laevigata	RLG00000017829
rosa_multiflora	Rmu_sc0000389.1_g000038
rosa_roxburghii	Rroxscaffold_2G00133050
rosa_rugosa	Rorug02G0168500.1
rosa_samantha	Rh2AG220800 Rh2BG230900 Rh2CG223200 Rh2DG227000
rosa_wichuraiana	Rw2G017030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	814
AatII	GACGTC	1 cut(s)	113
Acc36I	ACCTGC	1 cut(s)	236
AccBSI	CCGCTC	1 cut(s)	488
AclWI	GGATC	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	456
AcyI	GRCGYC	1 cut(s)	110
AfaI	GTAC	1 cut(s)	784
AfiI	CCNNNNNNNGG	2 cut(s)	278, 572
AgsI	TTSAA	1 cut(s)	1061
AhlI	ACTAGT	1 cut(s)	785
AluBI	AGCT	2 cut(s)	424, 723
AluI	AGCT	2 cut(s)	424, 723
Alw26I	GTCTC	2 cut(s)	386, 822
AlwI	GGATC	1 cut(s)	557
AlwNI	CAGNNNCTG	2 cut(s)	766, 886
Ama87I	CYCGRG	1 cut(s)	845
AoxI	GGCC	5 cut(s)	36, 120, 363, 430, 550
ApeKI	GCWGC	7 cut(s)	205, 285, 333, 757, 863, 932, 1078
AspLEI	GCGC	1 cut(s)	868
AspS9I	GGNCC	2 cut(s)	121, 243
AsuHPI	GGTGA	2 cut(s)	988, 1082
AsuII	TTCGAA	1 cut(s)	896
AvaI	CYCGRG	1 cut(s)	845
AvaII	GGWCC	1 cut(s)	243
AxyI	CCTNAGG	1 cut(s)	568
BbsI	GAAGAC	1 cut(s)	303
BbvI	GCAGC	7 cut(s)	217, 272, 345, 769, 875, 919, 1090
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	4 cut(s)	412, 544, 799, 945
BcgI	CGANNNNNNTGC	6 cut(s)	201, 235, 312, 346, 1010, 1044
BcoDI	GTCTC	2 cut(s)	386, 822
BcuI	ACTAGT	1 cut(s)	785
BfaI	CTAG	3 cut(s)	444, 786, 1099
BfmI	CTRYAG	3 cut(s)	193, 229, 331
BfoI	RGCGCY	1 cut(s)	869
BfuAI	ACCTGC	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	243
BmeT110I	CYCGRG	1 cut(s)	845
BmgT120I	GGNCC	2 cut(s)	121, 243
BmiI	GGNNCC	1 cut(s)	123
BmrI	ACTGGG	1 cut(s)	591
BmuI	ACTGGG	1 cut(s)	591
BpiI	GAAGAC	1 cut(s)	303
BpmI	CTGGAG	2 cut(s)	390, 908
Bpu10I	CCTNAGC	1 cut(s)	719
Bpu14I	TTCGAA	1 cut(s)	896
BpuEI	CTTGAG	2 cut(s)	125, 368
BsaHI	GRCGYC	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	386
BsaJI	CCNNGG	2 cut(s)	117, 411
BsaXI	ACNNNNNCTCC	2 cut(s)	970, 1000
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 572
Bse118I	RCCGGY	2 cut(s)	22, 973
Bse1I	ACTGG	5 cut(s)	245, 514, 586, 749, 1043
Bse21I	CCTNAGG	1 cut(s)	568
BseDI	CCNNGG	2 cut(s)	117, 411
BseLI	CCNNNNNNNGG	2 cut(s)	278, 572
BseMII	CTCAG	3 cut(s)	582, 833, 869
BseNI	ACTGG	5 cut(s)	245, 514, 586, 749, 1043
BseXI	GCAGC	7 cut(s)	217, 272, 345, 769, 875, 919, 1090
BshFI	GGCC	5 cut(s)	38, 122, 365, 432, 552
BsiHKCI	CYCGRG	1 cut(s)	845
BsiSI	CCGG	6 cut(s)	23, 128, 354, 795, 915, 974
BslFI	GGGAC	2 cut(s)	254, 700
BslI	CCNNNNNNNGG	2 cut(s)	278, 572
BsmAI	GTCTC	2 cut(s)	386, 822
BsmBI	CGTCTC	1 cut(s)	822
BsmFI	GGGAC	2 cut(s)	254, 700
BsnI	GGCC	5 cut(s)	38, 122, 365, 432, 552
Bso31I	GGTCTC	1 cut(s)	386
BsoBI	CYCGRG	1 cut(s)	845
Bsp119I	TTCGAA	1 cut(s)	896
Bsp143I	GATC	2 cut(s)	562, 841
Bsp19I	CCATGG	1 cut(s)	411
BspANI	GGCC	5 cut(s)	38, 122, 365, 432, 552
BspCNI	CTCAG	3 cut(s)	581, 832, 868
BspLI	GGNNCC	1 cut(s)	123
BspMAI	CTGCAG	2 cut(s)	233, 335
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	1 cut(s)	557
BspT104I	TTCGAA	1 cut(s)	896
BspTNI	GGTCTC	1 cut(s)	386
BsrBI	CCGCTC	1 cut(s)	488
BsrFI	RCCGGY	2 cut(s)	22, 973
BsrI	ACTGG	5 cut(s)	245, 514, 586, 749, 1043
BssAI	RCCGGY	2 cut(s)	22, 973
BssECI	CCNNGG	2 cut(s)	117, 411
BssMI	GATC	2 cut(s)	562, 841
BssNI	GRCGYC	1 cut(s)	110
BssT1I	CCWWGG	2 cut(s)	117, 411
Bst4CI	ACNGT	1 cut(s)	998
BstACI	GRCGYC	1 cut(s)	110
BstAPI	GCANNNNNTGC	1 cut(s)	228
BstBI	TTCGAA	1 cut(s)	896
BstC8I	GCNNGC	4 cut(s)	24, 36, 135, 233
BstDEI	CTNAG	5 cut(s)	345, 568, 719, 819, 855
BstDSI	CCRYGG	1 cut(s)	411
BstH2I	RGCGCY	1 cut(s)	869
BstHHI	GCGC	1 cut(s)	868
BstKTI	GATC	2 cut(s)	565, 844
BstMAI	GTCTC	2 cut(s)	386, 822
BstMBI	GATC	2 cut(s)	562, 841
BstMWI	GCNNNNNNNGC	5 cut(s)	99, 228, 285, 633, 763
BstSFI	CTRYAG	3 cut(s)	193, 229, 331
BstV1I	GCAGC	7 cut(s)	217, 272, 345, 769, 875, 919, 1090
BstV2I	GAAGAC	1 cut(s)	303
Bsu36I	CCTNAGG	1 cut(s)	568
BsuRI	GGCC	5 cut(s)	38, 122, 365, 432, 552
BtgI	CCRYGG	1 cut(s)	411
BtsI	GCAGTG	2 cut(s)	634, 672
BtsIMutI	CAGTG	4 cut(s)	634, 672, 742, 1003
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	4 cut(s)	24, 36, 135, 233
CaiI	CAGNNNCTG	2 cut(s)	766, 886
CfoI	GCGC	1 cut(s)	868
Cfr10I	RCCGGY	2 cut(s)	22, 973
Cfr13I	GGNCC	2 cut(s)	121, 243
CseI	GACGC	2 cut(s)	211, 565
Csp6I	GTAC	1 cut(s)	783
CviAII	CATG	7 cut(s)	376, 412, 667, 679, 772, 1049, 1065
CviQI	GTAC	1 cut(s)	783
DdeI	CTNAG	5 cut(s)	345, 568, 719, 819, 855
DpnI	GATC	2 cut(s)	564, 843
DpnII	GATC	2 cut(s)	562, 841
DrdI	GACNNNNNNGTC	1 cut(s)	814
DseDI	GACNNNNNNGTC	1 cut(s)	814
Eco130I	CCWWGG	2 cut(s)	117, 411
Eco31I	GGTCTC	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	456
Eco81I	CCTNAGG	1 cut(s)	568
Eco88I	CYCGRG	1 cut(s)	845
EcoO109I	RGGNCCY	1 cut(s)	121
EcoT14I	CCWWGG	2 cut(s)	117, 411
ErhI	CCWWGG	2 cut(s)	117, 411
Esp3I	CGTCTC	1 cut(s)	822
FaeI	CATG	7 cut(s)	379, 415, 670, 682, 775, 1052, 1068
FaqI	GGGAC	2 cut(s)	254, 700
FatI	CATG	7 cut(s)	375, 411, 666, 678, 771, 1048, 1064
FauI	CCCGC	3 cut(s)	132, 635, 1024
FspBI	CTAG	3 cut(s)	444, 786, 1099
GlaI	GCGC	1 cut(s)	867
GsuI	CTGGAG	2 cut(s)	390, 908
HaeII	RGCGCY	1 cut(s)	869
HaeIII	GGCC	5 cut(s)	38, 122, 365, 432, 552
HapII	CCGG	6 cut(s)	23, 128, 354, 795, 915, 974
HgaI	GACGC	2 cut(s)	211, 565
HhaI	GCGC	1 cut(s)	868
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	7 cut(s)	379, 415, 670, 682, 775, 1052, 1068
Hin6I	GCGC	1 cut(s)	866
HinP1I	GCGC	1 cut(s)	866
HinfI	GANTC	9 cut(s)	158, 303, 341, 350, 359, 447, 713, 883, 908
HpaII	CCGG	6 cut(s)	23, 128, 354, 795, 915, 974
HphI	GGTGA	2 cut(s)	988, 1082
Hpy166II	GTNNAC	1 cut(s)	688
Hpy188I	TCNGA	9 cut(s)	13, 150, 370, 660, 807, 822, 858, 882, 990
Hpy188III	TCNNGA	4 cut(s)	321, 845, 847, 887
Hpy8I	GTNNAC	1 cut(s)	688
Hpy99I	CGWCG	5 cut(s)	44, 112, 115, 536, 940
HpyAV	CCTTC	2 cut(s)	471, 749
HpyCH4III	ACNGT	1 cut(s)	998
HpyCH4IV	ACGT	3 cut(s)	110, 267, 534
HpyCH4V	TGCA	6 cut(s)	222, 231, 333, 832, 965, 1078
HpyF10VI	GCNNNNNNNGC	5 cut(s)	99, 228, 285, 633, 763
HpyF3I	CTNAG	5 cut(s)	345, 568, 719, 819, 855
HpySE526I	ACGT	3 cut(s)	110, 267, 534
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	7 cut(s)	379, 415, 670, 682, 775, 1052, 1068
HspAI	GCGC	1 cut(s)	866
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	562, 841
LmnI	GCTCC	2 cut(s)	130, 254
Lsp1109I	GCAGC	7 cut(s)	217, 272, 345, 769, 875, 919, 1090
MaeI	CTAG	3 cut(s)	444, 786, 1099
MaeII	ACGT	3 cut(s)	110, 267, 534
MaeIII	GTNAC	6 cut(s)	236, 258, 481, 541, 976, 1034
MalI	GATC	2 cut(s)	564, 843
MbiI	CCGCTC	1 cut(s)	488
MboI	GATC	2 cut(s)	562, 841
MboII	GAAGA	7 cut(s)	303, 306, 309, 456, 459, 462, 696
MluCI	AATT	1 cut(s)	749
MlyI	GAGTC	7 cut(s)	312, 335, 344, 353, 441, 722, 917
MmeI	TCCRAC	2 cut(s)	36, 1013
MreI	CGCCGGCG	1 cut(s)	22
MroNI	GCCGGC	1 cut(s)	22
MseI	TTAA	1 cut(s)	606
MslI	CAYNNNNRTG	1 cut(s)	677
MspI	CCGG	6 cut(s)	23, 128, 354, 795, 915, 974
MwoI	GCNNNNNNNGC	5 cut(s)	99, 228, 285, 633, 763
NaeI	GCCGGC	1 cut(s)	24
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	2 cut(s)	562, 841
NgoMIV	GCCGGC	1 cut(s)	22
NlaIII	CATG	7 cut(s)	379, 415, 670, 682, 775, 1052, 1068
NlaIV	GGNNCC	1 cut(s)	123
NmeAIII	GCCGAG	2 cut(s)	341, 405
NmuCI	GTSAC	1 cut(s)	976
NspV	TTCGAA	1 cut(s)	896
PaeR7I	CTCGAG	1 cut(s)	845
PdiI	GCCGGC	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	158, 883
PflFI	GACNNNGTC	1 cut(s)	112
PleI	GAGTC	7 cut(s)	311, 335, 344, 353, 441, 721, 916
PpsI	GAGTC	7 cut(s)	311, 335, 344, 353, 441, 721, 916
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	2 cut(s)	121, 243
PstI	CTGCAG	2 cut(s)	233, 335
PstNI	CAGNNNCTG	2 cut(s)	766, 886
PsyI	GACNNNGTC	1 cut(s)	112
RsaI	GTAC	1 cut(s)	784
RsaNI	GTAC	1 cut(s)	783
RseI	CAYNNNNRTG	1 cut(s)	677
SaqAI	TTAA	1 cut(s)	606
Sau3AI	GATC	2 cut(s)	562, 841
Sau96I	GGNCC	2 cut(s)	121, 243
SbfI	CCTGCAGG	1 cut(s)	233
SchI	GAGTC	7 cut(s)	312, 335, 344, 353, 441, 722, 917
SdaI	CCTGCAGG	1 cut(s)	233
SetI	ASST	9 cut(s)	113, 230, 270, 311, 426, 537, 725, 741, 985
SfcI	CTRYAG	3 cut(s)	193, 229, 331
Sfr274I	CTCGAG	1 cut(s)	845
SfuI	TTCGAA	1 cut(s)	896
SgrAI	CRCCGGYG	2 cut(s)	22, 973
SinI	GGWCC	1 cut(s)	243
SlaI	CTCGAG	1 cut(s)	845
SmiMI	CAYNNNNRTG	1 cut(s)	677
SmlI	CTYRAG	3 cut(s)	140, 383, 845
SmoI	CTYRAG	3 cut(s)	140, 383, 845
SpeI	ACTAGT	1 cut(s)	785
Sse8387I	CCTGCAGG	1 cut(s)	233
Sse9I	AATT	1 cut(s)	749
SspMI	CTAG	3 cut(s)	444, 786, 1099
StyI	CCWWGG	2 cut(s)	117, 411
TaaI	ACNGT	1 cut(s)	998
TaiI	ACGT	3 cut(s)	113, 270, 537
TaqI	TCGA	4 cut(s)	211, 339, 846, 896
TasI	AATT	1 cut(s)	749
TauI	GCSGC	7 cut(s)	102, 291, 432, 639, 642, 973, 1005
TfiI	GAWTC	2 cut(s)	158, 883
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TscAI	CASTG	4 cut(s)	634, 679, 749, 1003
TseFI	GTSAC	1 cut(s)	976
TseI	GCWGC	7 cut(s)	205, 285, 333, 757, 863, 932, 1078
Tsp45I	GTSAC	1 cut(s)	976
TspDTI	ATGAA	4 cut(s)	644, 683, 695, 851
TspGWI	ACGGA	2 cut(s)	953, 1023
TspRI	CASTG	4 cut(s)	634, 679, 749, 1003
Tth111I	GACNNNGTC	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	243
XhoI	CTCGAG	1 cut(s)	845
XspI	CTAG	3 cut(s)	444, 786, 1099
ZraI	GACGTC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.