pycom01g06920

dof zinc finger protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
7452282 .. 7453707
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g06920.3

Sequence Viewer

Length: 1335 bp
ATGATGTCCTCAGATGCTGCACAGCCGGCAAAGCCAAAAGACGACGAGAACCCAACAGGTGGATCAGGCAGCAGCCGGCCGAAAACCACATCATCATCGTCATCGGGGCCAAAGCTGCCACCACCAGAGCAAGCCCTCAAGTGCCCGAGATGTGACTCACCCAACACCAAATTCTGCTACTACAACAACTACAGCCTCACGCAGCCACGCCACTTCTGCAAGACTTGCCGGAGATATTGGACCAAAGGCGGTGCTTTACGCAACGTCCCCATCGGCGGCGGCTGCCGGAAGAATAAGAAAATCAGGTCGTCTTCATCCTCCAATTCCAGGCTCTCCTGCAGCTTCGACTCATCAAAAGACTCGGCCGGCTCTTCCTCCTCGGAGAATATGATGCTCGGCGGCTTGAAGTTCTTCCATGGCATTTCGCCTGCCATGGATTTTCAGCTCGGCAGCATATCTAGGCTCCATAACAACAACCAGTTCTCTTCAAACCCAGCAGCTGGGATTAATTTCAACAACCCATTTTCAGCTTTCGGAGACGTTTCGGGTACTTCCGGTTTGAATATTAGTACTCATGAGCCATCAGCCGGTGGTGGGACAAACGCTTGTAATAATTCTTTTCTGGGTTTTAATTATCCGCTCACTTTGGGCGGCGGTGGAGGCGGTGCTAGTGGTAGTGGTGGGTTAATTAGTACACAGAATATGATGAGTGCTATGAACGTGCACAGTAGCCTTGCGTCTTCCATCGAGTCTTTGAGTTCTATTAACCAAGACCTTCACTGGAAAATGCAGCAGCAGAGGCTGGCCATGTTGATTGGTACGGAAGAGCATGACCAGTCAACTCATTCAACGCAGTCTCAGCTTGAAAACCAGCAGAAAACGCAGCAGATGATTACACCCATAAGCTTGTTTCAGAATCTGGAGGTATCATCATCCTCAAAACCTGATCATCATCAAGGTGTAAATCATGGAAGAAAAGGTGGGGATAACGCCACTGAGTGGTTCTTCGGGAACTCTTATGCAGCACCAGTGACTCCAACTCCAACCAACAGTGGTGGTGGTGGTGGCGCCGGAGGCAATGAGAACGCAAGCAACTGGCCTCATGGAATTCCAGCGTGGAGTAGTCATGATTTGCAGCAATACAATCATGATGATCTAGAAATTAATCGGGGAAATTATATTAATTTGTTTATTTTAAGAAATTATCTAAGAACTAAAAACACATTTTGGCATATGTTTCTGTTGATGTTGTTTTTGTTGGGGGGGGGGGGGGAAGGAAATTGTACGTTTTGCCCTGAGTTCATGATTATATTATCCAGTATATTTTATGAATGA

Protein Analysis

445

Amino Acids

47.76

Weight (kDa)

8.28

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65590
fragaria_vesca FvH4_1g19310
malus_domestica MD01G1041500.v1.1 MD15G1309400.v1.1
prunus_persica Prupe.6G205200_v2.0.a1
pyrus_communis pycom01g06920 pycom15g27370
rosa_chinensis RchiOBHm_Chr2g0110671
rosa_laevigata RLG00000017829
rosa_multiflora Rmu_sc0000389.1_g000038
rosa_roxburghii Rroxscaffold_2G00133050
rosa_rugosa Rorug02G0168500.1
rosa_samantha Rh2AG220800 Rh2BG230900 Rh2CG223200 Rh2DG227000
rosa_wichuraiana Rw2G017030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1067
AccB7I CCANNNNNTGG 3 cut(s) 59, 500, 999
AccBSI CCGCTC 1 cut(s) 640
AciI CCGC 8 cut(s) 249, 276, 279, 399, 638, 651, 654, 663
AclWI GGATC 1 cut(s) 70
AcoI YGGCCR 3 cut(s) 77, 363, 804
AcsI RAATTY 2 cut(s) 170, 1107
AcyI GRCGYC 1 cut(s) 1068
AdeI CACNNNGTG 1 cut(s) 999
AfaI GTAC 5 cut(s) 550, 571, 694, 820, 1285
AfiI CCNNNNNNNGG 7 cut(s) 59, 275, 327, 500, 587, 594, 999
AgsI TTSAA 6 cut(s) 406, 489, 514, 562, 849, 866
AjnI CCWGG 1 cut(s) 326
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 7 cut(s) 115, 342, 445, 500, 530, 862, 906
AluI AGCT 7 cut(s) 115, 342, 445, 500, 530, 862, 906
Alw21I GWGCWC 1 cut(s) 726
Alw26I GTCTC 2 cut(s) 531, 861
Alw44I GTGCAC 1 cut(s) 722
AlwI GGATC 1 cut(s) 70
AlwNI CAGNNNCTG 4 cut(s) 17, 500, 802, 919
Ama87I CYCGRG 1 cut(s) 145
AoxI GGCC 5 cut(s) 77, 107, 363, 804, 1097
ApaLI GTGCAC 1 cut(s) 722
ApoI RAATTY 2 cut(s) 170, 1107
AseI ATTAAT 3 cut(s) 507, 1164, 1182
Asp700I GAANNNNTTC 1 cut(s) 410
AspLEI GCGC 1 cut(s) 1070
AspS9I GGNCC 2 cut(s) 107, 240
AsuHPI GGTGA 1 cut(s) 150
AvaI CYCGRG 1 cut(s) 145
AvaII GGWCC 1 cut(s) 240
BaeGI GKGCMC 2 cut(s) 146, 726
BalI TGGCCA 1 cut(s) 806
BanI GGYRCC 1 cut(s) 1067
BbsI GAAGAC 2 cut(s) 303, 732
Bbv12I GWGCWC 1 cut(s) 726
BccI CCATC 3 cut(s) 278, 589, 752
BciT130I CCWGG 1 cut(s) 328
BclI TGATCA 1 cut(s) 946
BcoDI GTCTC 2 cut(s) 531, 861
BfaI CTAG 3 cut(s) 459, 669, 1157
BfmI CTRYAG 2 cut(s) 190, 337
BfoI RGCGCY 1 cut(s) 1071
BmcAI AGTACT 1 cut(s) 571
Bme1390I CCNGG 1 cut(s) 328
Bme18I GGWCC 1 cut(s) 240
BmeT110I CYCGRG 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 107, 240
BmiI GGNNCC 3 cut(s) 108, 464, 1069
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 2 cut(s) 4, 381
BpiI GAAGAC 2 cut(s) 303, 732
BpmI CTGGAG 1 cut(s) 941
BpuEI CTTGAG 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 951
BsaHI GRCGYC 1 cut(s) 1068
BsaJI CCNNGG 3 cut(s) 378, 415, 432
BsaWI WCCGGW 1 cut(s) 554
BsaXI ACNNNNNCTCC 2 cut(s) 1024, 1054
Bsc4I CCNNNNNNNGG 7 cut(s) 59, 275, 327, 500, 587, 594, 999
Bse118I RCCGGY 4 cut(s) 25, 75, 365, 587
Bse1I ACTGG 6 cut(s) 478, 785, 835, 1028, 1100, 1317
Bse3DI GCAATG 1 cut(s) 1084
Bse8I GATNNNNATC 1 cut(s) 951
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 3 cut(s) 378, 415, 432
BseGI GGATG 2 cut(s) 314, 932
BseJI GATNNNNATC 1 cut(s) 951
BseLI CCNNNNNNNGG 7 cut(s) 59, 275, 327, 500, 587, 594, 999
BseMI GCAATG 1 cut(s) 1084
BseMII CTCAG 4 cut(s) 24, 872, 987, 1287
BseNI ACTGG 6 cut(s) 478, 785, 835, 1028, 1100, 1317
BseRI GAGGAG 1 cut(s) 367
BseSI GKGCMC 2 cut(s) 146, 726
BseX3I CGGCCG 2 cut(s) 77, 363
BseYI CCCAGC 2 cut(s) 493, 500
Bsh1285I CGRYCG 2 cut(s) 80, 366
BshFI GGCC 5 cut(s) 79, 109, 365, 806, 1099
BshNI GGYRCC 1 cut(s) 1067
BsiEI CGRYCG 2 cut(s) 80, 366
BsiHKAI GWGCWC 1 cut(s) 726
BsiHKCI CYCGRG 1 cut(s) 145
BsiSI CCGG 8 cut(s) 26, 76, 229, 286, 366, 555, 588, 1071
BslFI GGGAC 2 cut(s) 251, 610
BslI CCNNNNNNNGG 7 cut(s) 59, 275, 327, 500, 587, 594, 999
BsmAI GTCTC 2 cut(s) 531, 861
BsmBI CGTCTC 1 cut(s) 531
BsmFI GGGAC 2 cut(s) 251, 610
BsnI GGCC 5 cut(s) 79, 109, 365, 806, 1099
BsoBI CYCGRG 1 cut(s) 145
Bsp1286I GDGCHC 2 cut(s) 146, 726
Bsp143I GATC 3 cut(s) 62, 946, 1153
Bsp19I CCATGG 2 cut(s) 415, 432
BspACI CCGC 8 cut(s) 249, 276, 279, 399, 638, 651, 654, 663
BspANI GGCC 5 cut(s) 79, 109, 365, 806, 1099
BspCNI CTCAG 4 cut(s) 23, 871, 988, 1288
BspHI TCATGA 4 cut(s) 574, 1126, 1147, 1302
BspLI GGNNCC 3 cut(s) 108, 464, 1069
BspMAI CTGCAG 1 cut(s) 341
BspPI GGATC 1 cut(s) 70
BspQI GCTCTTC 2 cut(s) 376, 819
BspT107I GGYRCC 1 cut(s) 1067
BsrBI CCGCTC 1 cut(s) 640
BsrDI GCAATG 1 cut(s) 1084
BsrFI RCCGGY 4 cut(s) 25, 75, 365, 587
BsrI ACTGG 6 cut(s) 478, 785, 835, 1028, 1100, 1317
BssAI RCCGGY 4 cut(s) 25, 75, 365, 587
BssECI CCNNGG 3 cut(s) 378, 415, 432
BssMI GATC 3 cut(s) 62, 946, 1153
BssNI GRCGYC 1 cut(s) 1068
BssT1I CCWWGG 2 cut(s) 415, 432
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 2 cut(s) 728, 1052
Bst6I CTCTTC 3 cut(s) 376, 490, 819
BstACI GRCGYC 1 cut(s) 1068
BstAPI GCANNNNNTGC 1 cut(s) 225
BstC8I GCNNGC 7 cut(s) 27, 77, 132, 367, 429, 804, 1090
BstDEI CTNAG 5 cut(s) 10, 858, 996, 1208, 1296
BstDSI CCRYGG 2 cut(s) 415, 432
BstF5I GGATG 2 cut(s) 314, 932
BstH2I RGCGCY 1 cut(s) 1071
BstHHI GCGC 1 cut(s) 1070
BstKTI GATC 3 cut(s) 65, 949, 1156
BstMAI GTCTC 2 cut(s) 531, 861
BstMBI GATC 3 cut(s) 62, 946, 1153
BstMCI CGRYCG 2 cut(s) 80, 366
BstNI CCWGG 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 326
BstSFI CTRYAG 2 cut(s) 190, 337
BstSLI GKGCMC 2 cut(s) 146, 726
BstV2I GAAGAC 2 cut(s) 303, 732
BstZI CGGCCG 2 cut(s) 77, 363
BsuRI GGCC 5 cut(s) 79, 109, 365, 806, 1099
BtgI CCRYGG 2 cut(s) 415, 432
BtsCI GGATG 2 cut(s) 314, 932
BtsIMutI CAGTG 4 cut(s) 778, 993, 1035, 1057
Cac8I GCNNGC 7 cut(s) 27, 77, 132, 367, 429, 804, 1090
CaiI CAGNNNCTG 4 cut(s) 17, 500, 802, 919
CciI TCATGA 4 cut(s) 574, 1126, 1147, 1302
CfoI GCGC 1 cut(s) 1070
Cfr10I RCCGGY 4 cut(s) 25, 75, 365, 587
Cfr13I GGNCC 2 cut(s) 107, 240
CseI GACGC 1 cut(s) 726
Csp6I GTAC 5 cut(s) 549, 570, 693, 819, 1284
CspCI CAANNNNNGTGG 2 cut(s) 1036, 1071
CviQI GTAC 5 cut(s) 549, 570, 693, 819, 1284
DdeI CTNAG 5 cut(s) 10, 858, 996, 1208, 1296
DinI GGCGCC 1 cut(s) 1069
DpnI GATC 3 cut(s) 64, 948, 1155
DpnII GATC 3 cut(s) 62, 946, 1153
DraIII CACNNNGTG 1 cut(s) 999
EaeI YGGCCR 3 cut(s) 77, 363, 804
EagI CGGCCG 2 cut(s) 77, 363
Eam1104I CTCTTC 3 cut(s) 376, 490, 819
EarI CTCTTC 3 cut(s) 376, 490, 819
EclXI CGGCCG 2 cut(s) 77, 363
Eco130I CCWWGG 2 cut(s) 415, 432
Eco47I GGWCC 1 cut(s) 240
Eco52I CGGCCG 2 cut(s) 77, 363
Eco88I CYCGRG 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 1107
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 2 cut(s) 415, 432
EgeI GGCGCC 1 cut(s) 1069
EheI GGCGCC 1 cut(s) 1069
ErhI CCWWGG 2 cut(s) 415, 432
Esp3I CGTCTC 1 cut(s) 531
FaqI GGGAC 2 cut(s) 251, 610
FauNDI CATATG 1 cut(s) 1233
FbaI TGATCA 1 cut(s) 946
FokI GGATG 2 cut(s) 301, 919
FspBI CTAG 3 cut(s) 459, 669, 1157
GlaI GCGC 1 cut(s) 1069
GsaI CCCAGC 2 cut(s) 497, 504
GsuI CTGGAG 1 cut(s) 941
HaeII RGCGCY 1 cut(s) 1071
HaeIII GGCC 5 cut(s) 79, 109, 365, 806, 1099
HapII CCGG 8 cut(s) 26, 76, 229, 286, 366, 555, 588, 1071
HgaI GACGC 1 cut(s) 726
HhaI GCGC 1 cut(s) 1070
Hin1I GRCGYC 1 cut(s) 1068
Hin6I GCGC 1 cut(s) 1068
HinP1I GCGC 1 cut(s) 1068
HincII GTYRAC 1 cut(s) 840
HindII GTYRAC 1 cut(s) 840
HindIII AAGCTT 1 cut(s) 904
HinfI GANTC 6 cut(s) 155, 347, 359, 749, 916, 1033
HpaII CCGG 8 cut(s) 26, 76, 229, 286, 366, 555, 588, 1071
HphI GGTGA 1 cut(s) 150
Hpy166II GTNNAC 3 cut(s) 695, 724, 840
Hpy188I TCNGA 4 cut(s) 13, 382, 536, 915
Hpy188III TCNNGA 7 cut(s) 575, 920, 1009, 1127, 1148, 1157, 1303
Hpy8I GTNNAC 3 cut(s) 695, 724, 840
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 785, 1268
HpyCH4III ACNGT 2 cut(s) 728, 1052
HpyCH4IV ACGT 4 cut(s) 264, 540, 720, 1286
HpyCH4V TGCA 7 cut(s) 20, 219, 339, 724, 790, 1022, 1135
HpyF3I CTNAG 5 cut(s) 10, 858, 996, 1208, 1296
HpySE526I ACGT 4 cut(s) 264, 540, 720, 1286
Hsp92I GRCGYC 1 cut(s) 1068
HspAI GCGC 1 cut(s) 1068
KasI GGCGCC 1 cut(s) 1067
KroI GCCGGC 3 cut(s) 25, 75, 365
KroNI GCCGGC 3 cut(s) 27, 77, 367
Ksp22I TGATCA 1 cut(s) 946
Kzo9I GATC 3 cut(s) 62, 946, 1153
LguI GCTCTTC 2 cut(s) 376, 819
LmnI GCTCC 1 cut(s) 468
LweI GCATC 2 cut(s) 4, 381
MaeI CTAG 3 cut(s) 459, 669, 1157
MaeII ACGT 4 cut(s) 264, 540, 720, 1286
MaeIII GTNAC 2 cut(s) 152, 1030
MalI GATC 3 cut(s) 64, 948, 1155
MbiI CCGCTC 1 cut(s) 640
MboI GATC 3 cut(s) 62, 946, 1153
MboII GAAGA 9 cut(s) 301, 303, 363, 403, 477, 732, 836, 984, 997
MhlI GDGCHC 2 cut(s) 146, 726
MlsI TGGCCA 1 cut(s) 806
MluNI TGGCCA 1 cut(s) 806
Mly113I GGCGCC 1 cut(s) 1068
MlyI GAGTC 5 cut(s) 149, 341, 353, 758, 1027
MmeI TCCRAC 2 cut(s) 1061, 1067
Mox20I TGGCCA 1 cut(s) 806
MroNI GCCGGC 3 cut(s) 25, 75, 365
MroXI GAANNNNTTC 1 cut(s) 410
MscI TGGCCA 1 cut(s) 806
MseI TTAA 7 cut(s) 507, 630, 686, 765, 1164, 1182, 1196
MslI CAYNNNNRTG 1 cut(s) 957
Msp20I TGGCCA 1 cut(s) 806
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 8 cut(s) 26, 76, 229, 286, 366, 555, 588, 1071
MspR9I CCNGG 1 cut(s) 328
MvaI CCWGG 1 cut(s) 328
NaeI GCCGGC 3 cut(s) 27, 77, 367
NarI GGCGCC 1 cut(s) 1068
NcoI CCATGG 2 cut(s) 415, 432
NdeI CATATG 1 cut(s) 1233
NdeII GATC 3 cut(s) 62, 946, 1153
NgoMIV GCCGGC 3 cut(s) 25, 75, 365
NlaIV GGNNCC 3 cut(s) 108, 464, 1069
NmeAIII GCCGAG 3 cut(s) 341, 375, 426
NmuCI GTSAC 2 cut(s) 152, 1030
PagI TCATGA 4 cut(s) 574, 1126, 1147, 1302
PciSI GCTCTTC 2 cut(s) 376, 819
PdiI GCCGGC 3 cut(s) 27, 77, 367
PdmI GAANNNNTTC 1 cut(s) 410
PfeI GAWTC 1 cut(s) 916
PflMI CCANNNNNTGG 3 cut(s) 59, 500, 999
PleI GAGTC 5 cut(s) 149, 341, 353, 757, 1027
PluTI GGCGCC 1 cut(s) 1071
PpsI GAGTC 5 cut(s) 149, 341, 353, 757, 1027
PshBI ATTAAT 3 cut(s) 507, 1164, 1182
Psp6I CCWGG 1 cut(s) 326
PspFI CCCAGC 2 cut(s) 493, 500
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 3 cut(s) 108, 464, 1069
PspPI GGNCC 2 cut(s) 107, 240
PstI CTGCAG 1 cut(s) 341
PstNI CAGNNNCTG 4 cut(s) 17, 500, 802, 919
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 5 cut(s) 550, 571, 694, 820, 1285
RsaNI GTAC 5 cut(s) 549, 570, 693, 819, 1284
RseI CAYNNNNRTG 1 cut(s) 957
SapI GCTCTTC 2 cut(s) 376, 819
SaqAI TTAA 7 cut(s) 507, 630, 686, 765, 1164, 1182, 1196
Sau3AI GATC 3 cut(s) 62, 946, 1153
Sau96I GGNCC 2 cut(s) 107, 240
ScaI AGTACT 1 cut(s) 571
SchI GAGTC 5 cut(s) 149, 341, 353, 758, 1027
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 2 cut(s) 146, 726
SfaNI GCATC 2 cut(s) 4, 381
SfcI CTRYAG 2 cut(s) 190, 337
SfoI GGCGCC 1 cut(s) 1069
SinI GGWCC 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 957
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SsiI CCGC 8 cut(s) 249, 276, 279, 399, 638, 651, 654, 663
SspDI GGCGCC 1 cut(s) 1067
SspI AATATT 1 cut(s) 565
SspMI CTAG 3 cut(s) 459, 669, 1157
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 2 cut(s) 415, 432
TaaI ACNGT 2 cut(s) 728, 1052
TaiI ACGT 4 cut(s) 267, 543, 723, 1289
TaqI TCGA 2 cut(s) 345, 747
TatI WGTACW 2 cut(s) 569, 692
TauI GCSGC 4 cut(s) 279, 282, 402, 654
TfiI GAWTC 1 cut(s) 916
Tru1I TTAA 7 cut(s) 507, 630, 686, 765, 1164, 1182, 1196
Tru9I TTAA 7 cut(s) 507, 630, 686, 765, 1164, 1182, 1196
TscAI CASTG 4 cut(s) 785, 1000, 1035, 1057
TseFI GTSAC 2 cut(s) 152, 1030
Tsp45I GTSAC 2 cut(s) 152, 1030
TspDTI ATGAA 3 cut(s) 303, 731, 1291
TspGWI ACGGA 1 cut(s) 836
TspRI CASTG 4 cut(s) 785, 1000, 1035, 1057
Van91I CCANNNNNTGG 3 cut(s) 59, 500, 999
VneI GTGCAC 1 cut(s) 722
VpaK11BI GGWCC 1 cut(s) 240
VspI ATTAAT 3 cut(s) 507, 1164, 1182
XapI RAATTY 2 cut(s) 170, 1107
XbaI TCTAGA 1 cut(s) 1156
XmnI GAANNNNTTC 1 cut(s) 410
XspI CTAG 3 cut(s) 459, 669, 1157
ZrmI AGTACT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.