AT5G66460

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
26538395 .. 26541692
3298 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G66460.1

Sequence Viewer

Length: 1296 bp
ATGAAGCTTCTGGCTCTGTTTCCATTTCTAGCGATCGTGATCCAACTCAGCTGTTGGGAGCTAGGAACAGATGCATTACCGAGCGGTGGGTTCGTGAGGACGAAAGGTGTTCAGTTTAGTCTCAATGGCTATCCATATTACGCTAATGGCTTCAATGCCTACTGGCTCATGTACGTAGCCTCCGATCCATCCCAACGGTCTAAGATCTCCACCGCTTTCCAAGATGCTTCTCGCCATGGATTGACCGTTGCTCGAACCTGGGCTTTCAGCGATGGCGGTTACAGGGCTCTTCAGTATTCCCCTGGCTCCTACAACGAGGATATGTTTCAGGGTTTGGATTTTGCGTTAGCTGAGGCAAGAAGGCATGGTATAAAGATAATACTCAGCTTTGCCAATAACTACGAGAGCTTCGGAGGGAGGAAGCAATATGTGGATTGGGCTCGAAGCAGAGGCCGTCCCGTTTCTTCTGAAGACGACTTCTTCACTGACTCTCTTGTTAAAGATTTCTACAAGAACCATATCAAGGCTGTGCTGAACAGATTCAATACCTTTACCAAAGTTCATTACAAAGATGACCCAACCATTATGGCTTGGGAGCTCATGAACGAGCCCCGTTGCCCCTCTGATCCTTCCGGAAGAGCCATTCAGGCTTGGATTACTGAAATGGCTGCTCATGTGAAATCACTAGACAGAAACCATCTGCTTGAAGCTGGCCTCGAAGGTTTCTATGGTCAGTCTTCACCTCAAAGCAAGACTCTTAACCCACCTGGCCAGTTTGGAACCGATTTCATCGCCAATAACCGCATTCCCGGCATTGATTTCGTCACGGTTCACTCTTACCCTGATGAATGGTTTCCAGACTCAAGCGAGCAATCCCAAATGGATTTCTTGAACAAATGGCTAGACGCACACATCCAAGACGCACAGAACGTTCTTCACAAACCAATAATATTAGCAGAGTTTGGTAAATCAATGAAGAAACCAGGTTATACCCCAGCGCAGAGAGACATCGTCTTCAACACCGTGTACAGCAAGATTTACGGGTCTGCAAAACGAGGAGGTGCAGCAGCAGGAGGATTGTTCTGGCAACTTCTGGTAAACGGAATTGATAATTTTCAAGATGGGTATGGGATCATACTTAGCCAAAGCTCGTCGACCGTTAACGTCATTTCACAGCAATCGCGGAAGTTGACTTTGATTAGGAAAATCTTCGCTAGGATGATCAATGTGGAGAAATGGAAGAGAGCGAGAGGTCAGGGACAAGTTGGGAAACGAGGTCACAAAATCAATAACTGA

Protein Analysis

431

Amino Acids

48.57

Weight (kDa)

9.33

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GH5_mannosidase PF26410 31 - 363 1.7e-54 GH family 5 beta-mannosidase-like
Cellulase PF00150 72 - 328 4e-13 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015803)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 84
AccI GTMKAC 1 cut(s) 1154
AccII CGCG 1 cut(s) 1183
AccIII TCCGGA 1 cut(s) 632
AciI CCGC 5 cut(s) 84, 213, 276, 802, 1183
AclI AACGTT 1 cut(s) 930
AclWI GGATC 4 cut(s) 34, 179, 620, 1139
AcoI YGGCCR 1 cut(s) 769
AcuI CTGAAG 2 cut(s) 275, 489
AfaI GTAC 2 cut(s) 173, 1028
AfiI CCNNNNNNNGG 2 cut(s) 86, 523
AgsI TTSAA 6 cut(s) 154, 544, 707, 892, 1018, 1118
AjnI CCWGG 4 cut(s) 257, 301, 766, 982
AluBI AGCT 9 cut(s) 7, 51, 61, 350, 387, 408, 598, 710, 1149
AluI AGCT 9 cut(s) 7, 51, 61, 350, 387, 408, 598, 710, 1149
Alw21I GWGCWC 1 cut(s) 600
Alw26I GTCTC 2 cut(s) 125, 999
AlwI GGATC 4 cut(s) 34, 179, 620, 1139
Aor13HI TCCGGA 1 cut(s) 632
AoxI GGCC 3 cut(s) 451, 712, 769
ApeKI GCWGC 3 cut(s) 668, 1064, 1067
Asp700I GAANNNNTTC 3 cut(s) 539, 852, 1208
AspLEI GCGC 1 cut(s) 1000
AsuC2I CCSGG 1 cut(s) 810
AsuHPI GGTGA 1 cut(s) 732
BalI TGGCCA 1 cut(s) 771
BanII GRGCYC 4 cut(s) 289, 442, 600, 612
BbsI GAAGAC 3 cut(s) 477, 729, 1006
Bbv12I GWGCWC 1 cut(s) 600
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 3 cut(s) 655, 1076, 1079
BccI CCATC 4 cut(s) 196, 266, 705, 1115
BceAI ACGGC 1 cut(s) 438
BcgI CGANNNNNNTGC 2 cut(s) 802, 836
BciT130I CCWGG 4 cut(s) 259, 303, 768, 984
BclI TGATCA 1 cut(s) 1221
BcnI CCSGG 1 cut(s) 810
BcoDI GTCTC 2 cut(s) 125, 999
BfaI CTAG 5 cut(s) 29, 62, 686, 902, 1215
BglI GCCNNNNNGGC 1 cut(s) 647
BglII AGATCT 1 cut(s) 204
BisI GCNGC 3 cut(s) 669, 1065, 1068
BlsI GCNGC 3 cut(s) 670, 1066, 1069
Bme1390I CCNGG 5 cut(s) 259, 303, 768, 810, 984
BmiI GGNNCC 2 cut(s) 307, 781
BmrFI CCNGG 5 cut(s) 259, 303, 768, 810, 984
BmsI GCATC 2 cut(s) 61, 214
BpiI GAAGAC 3 cut(s) 477, 729, 1006
Bpu10I CCTNAGC 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 847
BpuMI CCSGG 1 cut(s) 810
BsaAI YACGTR 1 cut(s) 175
BsaBI GATNNNNATC 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 235, 258, 301
BsaWI WCCGGW 1 cut(s) 632
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 523
Bse1I ACTGG 2 cut(s) 167, 772
Bse8I GATNNNNATC 1 cut(s) 38
BseAI TCCGGA 1 cut(s) 632
BseBI CCWGG 4 cut(s) 259, 303, 768, 984
BseDI CCNNGG 3 cut(s) 235, 258, 301
BseGI GGATG 3 cut(s) 188, 912, 1224
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 2 cut(s) 86, 523
BseMII CTCAG 3 cut(s) 61, 342, 397
BseNI ACTGG 2 cut(s) 167, 772
BseRI GAGGAG 1 cut(s) 1071
BseXI GCAGC 3 cut(s) 655, 1076, 1079
BseYI CCCAGC 1 cut(s) 994
BsgI GTGCAG 1 cut(s) 1083
Bsh1236I CGCG 1 cut(s) 1183
Bsh1285I CGRYCG 2 cut(s) 36, 1158
BshFI GGCC 3 cut(s) 453, 714, 771
BsiEI CGRYCG 2 cut(s) 36, 1158
BsiHKAI GWGCWC 1 cut(s) 600
BsiSI CCGG 2 cut(s) 633, 810
BslFI GGGAC 2 cut(s) 441, 1272
BslI CCNNNNNNNGG 2 cut(s) 86, 523
BsmAI GTCTC 2 cut(s) 125, 999
BsmFI GGGAC 2 cut(s) 441, 1272
BsmI GAATGC 1 cut(s) 804
BsnI GGCC 3 cut(s) 453, 714, 771
Bsp1286I GDGCHC 4 cut(s) 289, 442, 600, 612
Bsp13I TCCGGA 1 cut(s) 632
Bsp1407I TGTACA 1 cut(s) 1026
Bsp143I GATC 7 cut(s) 33, 39, 184, 204, 625, 1131, 1221
Bsp19I CCATGG 1 cut(s) 235
BspACI CCGC 5 cut(s) 84, 213, 276, 802, 1183
BspANI GGCC 3 cut(s) 453, 714, 771
BspCNI CTCAG 3 cut(s) 60, 343, 396
BspEI TCCGGA 1 cut(s) 632
BspFNI CGCG 1 cut(s) 1183
BspHI TCATGA 1 cut(s) 600
BspLI GGNNCC 2 cut(s) 307, 781
BspPI GGATC 4 cut(s) 34, 179, 620, 1139
BspQI GCTCTTC 2 cut(s) 294, 631
BsrBI CCGCTC 1 cut(s) 84
BsrGI TGTACA 1 cut(s) 1026
BsrI ACTGG 2 cut(s) 167, 772
BssECI CCNNGG 3 cut(s) 235, 258, 301
BssMI GATC 7 cut(s) 33, 39, 184, 204, 625, 1131, 1221
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 4 cut(s) 259, 303, 768, 984
Bst4CI ACNGT 5 cut(s) 198, 247, 829, 1024, 1159
Bst6I CTCTTC 3 cut(s) 294, 631, 1235
BstAUI TGTACA 1 cut(s) 1026
BstBAI YACGTR 1 cut(s) 175
BstC8I GCNNGC 2 cut(s) 712, 869
BstDEI CTNAG 5 cut(s) 47, 201, 351, 383, 1139
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 3 cut(s) 188, 912, 1224
BstFNI CGCG 1 cut(s) 1183
BstHHI GCGC 1 cut(s) 1000
BstKTI GATC 7 cut(s) 36, 42, 187, 207, 628, 1134, 1224
BstMAI GTCTC 2 cut(s) 125, 999
BstMBI GATC 7 cut(s) 33, 39, 184, 204, 625, 1131, 1221
BstMCI CGRYCG 2 cut(s) 36, 1158
BstMWI GCNNNNNNNGC 2 cut(s) 647, 810
BstNI CCWGG 4 cut(s) 259, 303, 768, 984
BstSCI CCNGG 5 cut(s) 257, 301, 766, 808, 982
BstSNI TACGTA 1 cut(s) 175
BstUI CGCG 1 cut(s) 1183
BstV1I GCAGC 3 cut(s) 655, 1076, 1079
BstV2I GAAGAC 3 cut(s) 477, 729, 1006
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BsuRI GGCC 3 cut(s) 453, 714, 771
BtgI CCRYGG 1 cut(s) 235
BtgZI GCGATG 2 cut(s) 285, 775
BtsCI GGATG 3 cut(s) 188, 912, 1224
BtsIMutI CAGTG 1 cut(s) 483
Cac8I GCNNGC 2 cut(s) 712, 869
CciI TCATGA 1 cut(s) 600
CfoI GCGC 1 cut(s) 1000
CseI GACGC 2 cut(s) 914, 929
CsiI ACCWGGT 1 cut(s) 982
Csp6I GTAC 2 cut(s) 172, 1027
CviAII CATG 5 cut(s) 169, 236, 365, 601, 674
CviQI GTAC 2 cut(s) 172, 1027
DdeI CTNAG 5 cut(s) 47, 201, 351, 383, 1139
DpnI GATC 7 cut(s) 35, 41, 186, 206, 627, 1133, 1223
DpnII GATC 7 cut(s) 33, 39, 184, 204, 625, 1131, 1221
EaeI YGGCCR 1 cut(s) 769
Eam1104I CTCTTC 3 cut(s) 294, 631, 1235
EarI CTCTTC 3 cut(s) 294, 631, 1235
Ecl136II GAGCTC 1 cut(s) 598
Eco105I TACGTA 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 235
Eco24I GRGCYC 4 cut(s) 289, 442, 600, 612
Eco53kI GAGCTC 1 cut(s) 598
Eco57I CTGAAG 2 cut(s) 275, 489
EcoICRI GAGCTC 1 cut(s) 598
EcoRII CCWGG 4 cut(s) 257, 301, 766, 982
EcoT14I CCWWGG 1 cut(s) 235
EcoT22I ATGCAT 1 cut(s) 76
EcoT38I GRGCYC 4 cut(s) 289, 442, 600, 612
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 5 cut(s) 172, 239, 368, 604, 677
FaqI GGGAC 2 cut(s) 441, 1272
FatI CATG 5 cut(s) 168, 235, 364, 600, 673
FbaI TGATCA 1 cut(s) 1221
FblI GTMKAC 1 cut(s) 1154
Fnu4HI GCNGC 3 cut(s) 669, 1065, 1068
FokI GGATG 3 cut(s) 175, 899, 1231
FriOI GRGCYC 4 cut(s) 289, 442, 600, 612
Fsp4HI GCNGC 3 cut(s) 669, 1065, 1068
FspBI CTAG 5 cut(s) 29, 62, 686, 902, 1215
GlaI GCGC 1 cut(s) 999
GluI GCNGC 3 cut(s) 669, 1065, 1068
GsaI CCCAGC 1 cut(s) 998
HaeIII GGCC 3 cut(s) 453, 714, 771
HapII CCGG 2 cut(s) 633, 810
HgaI GACGC 2 cut(s) 914, 929
HhaI GCGC 1 cut(s) 1000
Hin1II CATG 5 cut(s) 172, 239, 368, 604, 677
Hin6I GCGC 1 cut(s) 998
HinP1I GCGC 1 cut(s) 998
HincII GTYRAC 3 cut(s) 1155, 1162, 1191
HindII GTYRAC 3 cut(s) 1155, 1162, 1191
HindIII AAGCTT 1 cut(s) 5
HinfI GANTC 4 cut(s) 488, 540, 754, 860
HpaI GTTAAC 1 cut(s) 1162
HpaII CCGG 2 cut(s) 633, 810
HphI GGTGA 1 cut(s) 732
Hpy166II GTNNAC 6 cut(s) 832, 1027, 1099, 1155, 1162, 1191
Hpy188I TCNGA 4 cut(s) 184, 413, 469, 625
Hpy188III TCNNGA 7 cut(s) 37, 94, 601, 633, 857, 889, 1118
Hpy8I GTNNAC 6 cut(s) 832, 1027, 1099, 1155, 1162, 1191
Hpy99I CGWCG 1 cut(s) 1156
HpyAV CCTTC 3 cut(s) 354, 639, 713
HpyCH4III ACNGT 5 cut(s) 198, 247, 829, 1024, 1159
HpyCH4IV ACGT 3 cut(s) 174, 930, 1164
HpyCH4V TGCA 3 cut(s) 74, 1049, 1064
HpyF10VI GCNNNNNNNGC 2 cut(s) 647, 810
HpyF3I CTNAG 5 cut(s) 47, 201, 351, 383, 1139
HpySE526I ACGT 3 cut(s) 174, 930, 1164
Hsp92II CATG 5 cut(s) 172, 239, 368, 604, 677
HspAI GCGC 1 cut(s) 998
Kpn2I TCCGGA 1 cut(s) 632
Ksp22I TGATCA 1 cut(s) 1221
KspAI GTTAAC 1 cut(s) 1162
Kzo9I GATC 7 cut(s) 33, 39, 184, 204, 625, 1131, 1221
LguI GCTCTTC 2 cut(s) 294, 631
LmnI GCTCC 3 cut(s) 58, 311, 595
Lsp1109I GCAGC 3 cut(s) 655, 1076, 1079
LweI GCATC 2 cut(s) 61, 214
MabI ACCWGGT 1 cut(s) 982
MaeI CTAG 5 cut(s) 29, 62, 686, 902, 1215
MaeII ACGT 3 cut(s) 174, 930, 1164
MaeIII GTNAC 3 cut(s) 278, 823, 1277
MalI GATC 7 cut(s) 35, 41, 186, 206, 627, 1133, 1223
MbiI CCGCTC 1 cut(s) 84
MboI GATC 7 cut(s) 33, 39, 184, 204, 625, 1131, 1221
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 4 cut(s) 289, 442, 600, 612
MlsI TGGCCA 1 cut(s) 771
MluCI AATT 2 cut(s) 1104, 1111
MluNI TGGCCA 1 cut(s) 771
MlyI GAGTC 3 cut(s) 482, 748, 854
MmeI TCCRAC 1 cut(s) 67
Mox20I TGGCCA 1 cut(s) 771
Mph1103I ATGCAT 1 cut(s) 76
MroI TCCGGA 1 cut(s) 632
MroXI GAANNNNTTC 3 cut(s) 539, 852, 1208
MscI TGGCCA 1 cut(s) 771
MseI TTAA 3 cut(s) 498, 759, 1161
Msp20I TGGCCA 1 cut(s) 771
MspA1I CMGCKG 1 cut(s) 51
MspI CCGG 2 cut(s) 633, 810
MspR9I CCNGG 5 cut(s) 259, 303, 768, 810, 984
Mva1269I GAATGC 1 cut(s) 804
MvaI CCWGG 4 cut(s) 259, 303, 768, 984
MvnI CGCG 1 cut(s) 1183
MwoI GCNNNNNNNGC 2 cut(s) 647, 810
NciI CCSGG 1 cut(s) 810
NcoI CCATGG 1 cut(s) 235
NdeII GATC 7 cut(s) 33, 39, 184, 204, 625, 1131, 1221
NlaIII CATG 5 cut(s) 172, 239, 368, 604, 677
NlaIV GGNNCC 2 cut(s) 307, 781
NmuCI GTSAC 2 cut(s) 823, 1277
NsiI ATGCAT 1 cut(s) 76
PagI TCATGA 1 cut(s) 600
PciSI GCTCTTC 2 cut(s) 294, 631
PcsI WCGNNNNNNNCGW 2 cut(s) 180, 927
PctI GAATGC 1 cut(s) 804
PdmI GAANNNNTTC 3 cut(s) 539, 852, 1208
PfeI GAWTC 1 cut(s) 540
PflFI GACNNNGTC 1 cut(s) 1010
PkrI GCNGC 3 cut(s) 670, 1066, 1069
Ple19I CGATCG 1 cut(s) 36
PleI GAGTC 3 cut(s) 482, 748, 854
PpsI GAGTC 3 cut(s) 482, 748, 854
Ppu21I YACGTR 1 cut(s) 175
Psp124BI GAGCTC 1 cut(s) 600
Psp1406I AACGTT 1 cut(s) 930
Psp6I CCWGG 4 cut(s) 257, 301, 766, 982
PspFI CCCAGC 1 cut(s) 994
PspGI CCWGG 4 cut(s) 257, 301, 766, 982
PspN4I GGNNCC 2 cut(s) 307, 781
PsuI RGATCY 1 cut(s) 204
PsyI GACNNNGTC 1 cut(s) 1010
PvuI CGATCG 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 51
RsaI GTAC 2 cut(s) 173, 1028
RsaNI GTAC 2 cut(s) 172, 1027
SacI GAGCTC 1 cut(s) 600
SalI GTCGAC 1 cut(s) 1153
SapI GCTCTTC 2 cut(s) 294, 631
SaqAI TTAA 3 cut(s) 498, 759, 1161
SatI GCNGC 3 cut(s) 669, 1065, 1068
Sau3AI GATC 7 cut(s) 33, 39, 184, 204, 625, 1131, 1221
SchI GAGTC 3 cut(s) 482, 748, 854
ScrFI CCNGG 5 cut(s) 259, 303, 768, 810, 984
SduI GDGCHC 4 cut(s) 289, 442, 600, 612
SexAI ACCWGGT 1 cut(s) 982
SfaNI GCATC 2 cut(s) 61, 214
SmlI CTYRAG 1 cut(s) 862
SmoI CTYRAG 1 cut(s) 862
SnaBI TACGTA 1 cut(s) 175
Sse9I AATT 2 cut(s) 1104, 1111
SsiI CCGC 5 cut(s) 84, 213, 276, 802, 1183
SspI AATATT 1 cut(s) 951
SspMI CTAG 5 cut(s) 29, 62, 686, 902, 1215
SstI GAGCTC 1 cut(s) 600
StyD4I CCNGG 5 cut(s) 257, 301, 766, 808, 982
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 5 cut(s) 198, 247, 829, 1024, 1159
TaiI ACGT 3 cut(s) 177, 933, 1167
TaqI TCGA 4 cut(s) 253, 442, 717, 1154
TasI AATT 2 cut(s) 1104, 1111
TatI WGTACW 1 cut(s) 1026
TfiI GAWTC 1 cut(s) 540
Tru1I TTAA 3 cut(s) 498, 759, 1161
Tru9I TTAA 3 cut(s) 498, 759, 1161
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 2 cut(s) 823, 1277
TseI GCWGC 3 cut(s) 668, 1064, 1067
Tsp45I GTSAC 2 cut(s) 823, 1277
TspDTI ATGAA 6 cut(s) 17, 551, 617, 778, 861, 989
TspGWI ACGGA 1 cut(s) 1116
TspRI CASTG 1 cut(s) 490
Tth111I GACNNNGTC 1 cut(s) 1010
XmiI GTMKAC 1 cut(s) 1154
XmnI GAANNNNTTC 3 cut(s) 539, 852, 1208
XspI CTAG 5 cut(s) 29, 62, 686, 902, 1215
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.