RchiOBHm_Chr2g0100951

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
12739834 .. 12742236
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47557

Sequence Viewer

Length: 1308 bp
ATGAAGCATCTACCTTTGGCTCTCTTTGTCTTAGCTTTTTTGATCCACCAGCAATGTTTTCACATCCATATTGAAGCAGCAGGCGATGATTTTATCAGAACCAGAGGAGTGCAGTTTCTATTGAATGGCAGTCCATACTATGCAAATGGGTTCAATGCGTACTGGTTGATGTATATGGCCTCTGATCCTTCTCAGAGGTACAAAGTATCGTCGGTTTTTCGTGAAGCAACTAGCCATGGCCTCACAGTGGCTAGAACTTGGGCTTTCAGTGATGGAGGTTACAGACCCCTTCAATTCTCTCCTGGCTCTTATAATGACCAAATGTTTAAGGGGTTGGATTTTGTTATAGCTGAGGCTAGAAGGTATGGGATTAAGCTGCTACTAAGCTTGGTGAACAACTATGAGAACTTTGGTGGAAAGAAGCAGTATGTGAACTGGGCAAGAAGCAAGGGGCAGTACTTGACTTCCGATGATGATTTCTTTAGAAACCCTGTTGTTAAGGGTTTCTACAAGAACCATGTTAGTACTGTTCTTAACAGATACAACATCTACACTAGAGTTCATTACAAAGATGATCCAACAATTATGGCTTGGGAGCTTATCAATGAGCCTAGATGCATATCAGATCCTTCAGGAAGGACCATTCAGGAATGGATAAGGGAAATGGCTTCTCATGTGAAGTCAATAGATAGAAATCATTTACTGGAAGCAGGTTTAGAGGGATTTTATGGACAATCAACACCTCAGAGGATGAGACTCAATCCTGGTTTCCAAATAGGAACAGACTTCATTGCAAATAATAGGATCCCTGGGATTGATTTTGCAACAGTTCACTCCTATCCAGATCAATGGTTGTCTAGCTCAAACGATCAATATCAACTGTTTTTCTTGAACAACTGGCTTAATACTCACATCCAAGATTCACAGTACATTCTTCGAAAGCCGATCTTCATCGCAGAATTTGGGAAATCTAGGAAAGATCCTGGTTTCAACACGCACCAAAGAGACCTGCTATTCAACACTGTGTACTACAAGATATACTCTTCAGCCAAGAGAGGGGGAGCTGCTGCTGGGGGTTTGTTCTGGCAACTTCTTACTGAGGGCATGAACTCGTTCGGTGATGGGTACGAGATAGTTCTGAGCCAAAGTCCCTCAACTGCTAATGTAATAGCTCAACAATCTCACAAGCTCTATCAGATTAGGAAGATCTTTGTGAAGATAAGAAATGCTCAGAGGTGGAAGAGAGCTAGGGCCATTAGAAGGGATCAATGGTTGGCTAGAAACAAAGGCAAGCCTATAGGAAATTGA

Protein Analysis

435

Amino Acids

50.31

Weight (kDa)

9.69

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GH5_mannosidase PF26410 30 - 363 8.6e-53 GH family 5 beta-mannosidase-like
Cellulase PF00150 68 - 331 1.7e-08 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015803)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 312
Acc36I ACCTGC 2 cut(s) 701, 1017
AclWI GGATC 8 cut(s) 37, 179, 569, 620, 799, 812, 974, 1272
AcsI RAATTY 1 cut(s) 959
AcuI CTGAAG 2 cut(s) 615, 1029
AfaI GTAC 7 cut(s) 161, 200, 458, 526, 929, 1028, 1127
AfiI CCNNNNNNNGG 3 cut(s) 247, 1056, 1260
AgsI TTSAA 7 cut(s) 74, 124, 154, 293, 892, 991, 1018
AjnI CCWGG 4 cut(s) 301, 763, 808, 982
Alw26I GTCTC 2 cut(s) 748, 999
AlwI GGATC 8 cut(s) 37, 179, 569, 620, 799, 812, 974, 1272
AoxI GGCC 3 cut(s) 177, 238, 1251
ApeKI GCWGC 4 cut(s) 77, 376, 1064, 1067
ApoI RAATTY 1 cut(s) 959
Asp700I GAANNNNTTC 1 cut(s) 1112
AspS9I GGNCC 2 cut(s) 639, 1251
AsuHPI GGTGA 2 cut(s) 403, 1130
AsuII TTCGAA 1 cut(s) 937
AvaII GGWCC 1 cut(s) 639
BamHI GGATCC 1 cut(s) 804
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 4 cut(s) 89, 363, 1051, 1054
BccI CCATC 2 cut(s) 266, 1115
BciT130I CCWGG 4 cut(s) 303, 765, 810, 984
BcoDI GTCTC 2 cut(s) 748, 999
BfaI CTAG 9 cut(s) 231, 252, 357, 555, 612, 858, 972, 1248, 1278
BfmI CTRYAG 1 cut(s) 1296
BfuAI ACCTGC 2 cut(s) 701, 1017
BglII AGATCT 1 cut(s) 1206
BisI GCNGC 4 cut(s) 78, 377, 1065, 1068
BlsI GCNGC 4 cut(s) 79, 378, 1066, 1069
BmcAI AGTACT 2 cut(s) 458, 526
Bme1390I CCNGG 4 cut(s) 303, 765, 810, 984
Bme18I GGWCC 1 cut(s) 639
BmgT120I GGNCC 2 cut(s) 639, 1251
BmiI GGNNCC 1 cut(s) 806
BmrFI CCNGG 4 cut(s) 303, 765, 810, 984
BmrI ACTGGG 1 cut(s) 445
BmsI GCATC 2 cut(s) 16, 605
BmuI ACTGGG 1 cut(s) 445
Bpu10I CCTNAGC 1 cut(s) 351
Bpu14I TTCGAA 1 cut(s) 937
BsaBI GATNNNNATC 4 cut(s) 619, 693, 873, 950
BsaI GGTCTC 1 cut(s) 999
BsaJI CCNNGG 3 cut(s) 235, 808, 809
Bsc4I CCNNNNNNNGG 3 cut(s) 247, 1056, 1260
Bse1I ACTGG 4 cut(s) 167, 440, 708, 902
Bse3DI GCAATG 2 cut(s) 59, 789
Bse8I GATNNNNATC 4 cut(s) 619, 693, 873, 950
BseBI CCWGG 4 cut(s) 303, 765, 810, 984
BseDI CCNNGG 3 cut(s) 235, 808, 809
BseGI GGATG 3 cut(s) 63, 756, 912
BseJI GATNNNNATC 4 cut(s) 619, 693, 873, 950
BseLI CCNNNNNNNGG 3 cut(s) 247, 1056, 1260
BseMI GCAATG 2 cut(s) 59, 789
BseMII CTCAG 6 cut(s) 206, 342, 758, 1089, 1130, 1244
BseNI ACTGG 4 cut(s) 167, 440, 708, 902
BseRI GAGGAG 1 cut(s) 120
BseXI GCAGC 4 cut(s) 89, 363, 1051, 1054
BseYI CCCAGC 1 cut(s) 1070
BsgI GTGCAG 1 cut(s) 131
BshFI GGCC 3 cut(s) 179, 240, 1253
BslFI GGGAC 1 cut(s) 1134
BslI CCNNNNNNNGG 3 cut(s) 247, 1056, 1260
BsmAI GTCTC 2 cut(s) 748, 999
BsmFI GGGAC 1 cut(s) 1134
BsnI GGCC 3 cut(s) 179, 240, 1253
Bso31I GGTCTC 1 cut(s) 999
Bsp119I TTCGAA 1 cut(s) 937
Bsp19I CCATGG 1 cut(s) 235
BspANI GGCC 3 cut(s) 179, 240, 1253
BspCNI CTCAG 6 cut(s) 205, 343, 757, 1090, 1131, 1243
BspLI GGNNCC 1 cut(s) 806
BspMI ACCTGC 2 cut(s) 701, 1017
BspPI GGATC 8 cut(s) 37, 179, 569, 620, 799, 812, 974, 1272
BspT104I TTCGAA 1 cut(s) 937
BspTNI GGTCTC 1 cut(s) 999
BsrDI GCAATG 2 cut(s) 59, 789
BsrI ACTGG 4 cut(s) 167, 440, 708, 902
BssECI CCNNGG 3 cut(s) 235, 808, 809
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 4 cut(s) 303, 765, 810, 984
Bst4CI ACNGT 6 cut(s) 247, 529, 829, 882, 927, 1024
Bst6I CTCTTC 2 cut(s) 1048, 1235
BstBI TTCGAA 1 cut(s) 937
BstC8I GCNNGC 2 cut(s) 82, 1292
BstDEI CTNAG 8 cut(s) 31, 192, 351, 383, 744, 1098, 1139, 1230
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 3 cut(s) 63, 756, 912
BstMAI GTCTC 2 cut(s) 748, 999
BstNI CCWGG 4 cut(s) 303, 765, 810, 984
BstSCI CCNGG 4 cut(s) 301, 763, 808, 982
BstSFI CTRYAG 1 cut(s) 1296
BstV1I GCAGC 4 cut(s) 89, 363, 1051, 1054
BstX2I RGATCY 4 cut(s) 625, 804, 979, 1206
BstXI CCANNNNNNTGG 1 cut(s) 849
BstYI RGATCY 4 cut(s) 625, 804, 979, 1206
BsuRI GGCC 3 cut(s) 179, 240, 1253
BtgI CCRYGG 1 cut(s) 235
BtgZI GCGATG 2 cut(s) 99, 937
BtsCI GGATG 3 cut(s) 63, 756, 912
BtsIMutI CAGTG 3 cut(s) 252, 274, 1020
BveI ACCTGC 2 cut(s) 701, 1017
Cac8I GCNNGC 2 cut(s) 82, 1292
Cfr13I GGNCC 2 cut(s) 639, 1251
Csp6I GTAC 7 cut(s) 160, 199, 457, 525, 928, 1027, 1126
CviAII CATG 4 cut(s) 236, 518, 674, 1105
CviQI GTAC 7 cut(s) 160, 199, 457, 525, 928, 1027, 1126
DdeI CTNAG 8 cut(s) 31, 192, 351, 383, 744, 1098, 1139, 1230
Eam1104I CTCTTC 2 cut(s) 1048, 1235
EarI CTCTTC 2 cut(s) 1048, 1235
Eco130I CCWWGG 1 cut(s) 235
Eco31I GGTCTC 1 cut(s) 999
Eco47I GGWCC 1 cut(s) 639
Eco57I CTGAAG 2 cut(s) 615, 1029
EcoRII CCWGG 4 cut(s) 301, 763, 808, 982
EcoT14I CCWWGG 1 cut(s) 235
EcoT22I ATGCAT 1 cut(s) 620
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 4 cut(s) 239, 521, 677, 1108
FalI AAGNNNNNCTT 2 cut(s) 932, 964
FaqI GGGAC 1 cut(s) 1134
FatI CATG 4 cut(s) 235, 517, 673, 1104
Fnu4HI GCNGC 4 cut(s) 78, 377, 1065, 1068
FokI GGATG 3 cut(s) 50, 763, 899
Fsp4HI GCNGC 4 cut(s) 78, 377, 1065, 1068
FspBI CTAG 9 cut(s) 231, 252, 357, 555, 612, 858, 972, 1248, 1278
GluI GCNGC 4 cut(s) 78, 377, 1065, 1068
GsaI CCCAGC 1 cut(s) 1074
HaeIII GGCC 3 cut(s) 179, 240, 1253
Hin1II CATG 4 cut(s) 239, 521, 677, 1108
HindIII AAGCTT 1 cut(s) 385
HinfI GANTC 2 cut(s) 756, 920
HphI GGTGA 2 cut(s) 403, 1130
Hpy166II GTNNAC 4 cut(s) 394, 433, 832, 1027
Hpy188I TCNGA 9 cut(s) 98, 184, 195, 469, 625, 747, 1140, 1197, 1233
Hpy188III TCNNGA 5 cut(s) 221, 633, 647, 842, 889
Hpy8I GTNNAC 4 cut(s) 394, 433, 832, 1027
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 6 cut(s) 198, 299, 354, 630, 639, 1254
HpyCH4III ACNGT 6 cut(s) 247, 529, 829, 882, 927, 1024
HpyCH4V TGCA 5 cut(s) 112, 143, 618, 794, 824
HpyF3I CTNAG 8 cut(s) 31, 192, 351, 383, 744, 1098, 1139, 1230
Hsp92II CATG 4 cut(s) 239, 521, 677, 1108
LmnI GCTCC 2 cut(s) 595, 1061
Lsp1109I GCAGC 4 cut(s) 89, 363, 1051, 1054
LweI GCATC 2 cut(s) 16, 605
MaeI CTAG 9 cut(s) 231, 252, 357, 555, 612, 858, 972, 1248, 1278
MaeIII GTNAC 1 cut(s) 278
MboII GAAGA 6 cut(s) 926, 940, 1035, 1216, 1228, 1252
MflI RGATCY 4 cut(s) 625, 804, 979, 1206
MluCI AATT 4 cut(s) 293, 582, 959, 1303
MlyI GAGTC 1 cut(s) 750
MmeI TCCRAC 2 cut(s) 315, 602
Mph1103I ATGCAT 1 cut(s) 620
MroXI GAANNNNTTC 1 cut(s) 1112
MseI TTAA 5 cut(s) 327, 372, 498, 534, 903
MspR9I CCNGG 4 cut(s) 303, 765, 810, 984
MvaI CCWGG 4 cut(s) 303, 765, 810, 984
NcoI CCATGG 1 cut(s) 235
NlaIII CATG 4 cut(s) 239, 521, 677, 1108
NlaIV GGNNCC 1 cut(s) 806
NsiI ATGCAT 1 cut(s) 620
NspV TTCGAA 1 cut(s) 937
PasI CCCWGGG 1 cut(s) 809
PdmI GAANNNNTTC 1 cut(s) 1112
PfeI GAWTC 1 cut(s) 920
PkrI GCNGC 4 cut(s) 79, 378, 1066, 1069
PleI GAGTC 1 cut(s) 750
PpsI GAGTC 1 cut(s) 750
PsiI TTATAA 1 cut(s) 312
Psp6I CCWGG 4 cut(s) 301, 763, 808, 982
PspFI CCCAGC 1 cut(s) 1070
PspGI CCWGG 4 cut(s) 301, 763, 808, 982
PspN4I GGNNCC 1 cut(s) 806
PspPI GGNCC 2 cut(s) 639, 1251
PsuI RGATCY 4 cut(s) 625, 804, 979, 1206
RsaI GTAC 7 cut(s) 161, 200, 458, 526, 929, 1028, 1127
RsaNI GTAC 7 cut(s) 160, 199, 457, 525, 928, 1027, 1126
SaqAI TTAA 5 cut(s) 327, 372, 498, 534, 903
SatI GCNGC 4 cut(s) 78, 377, 1065, 1068
Sau96I GGNCC 2 cut(s) 639, 1251
ScaI AGTACT 2 cut(s) 458, 526
SchI GAGTC 1 cut(s) 750
ScrFI CCNGG 4 cut(s) 303, 765, 810, 984
SfaNI GCATC 2 cut(s) 16, 605
SfcI CTRYAG 1 cut(s) 1296
SfuI TTCGAA 1 cut(s) 937
SinI GGWCC 1 cut(s) 639
Sse9I AATT 4 cut(s) 293, 582, 959, 1303
SspMI CTAG 9 cut(s) 231, 252, 357, 555, 612, 858, 972, 1248, 1278
StyD4I CCNGG 4 cut(s) 301, 763, 808, 982
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 6 cut(s) 247, 529, 829, 882, 927, 1024
TaqI TCGA 1 cut(s) 937
TasI AATT 4 cut(s) 293, 582, 959, 1303
TatI WGTACW 4 cut(s) 456, 524, 927, 1026
TfiI GAWTC 1 cut(s) 920
Tru1I TTAA 5 cut(s) 327, 372, 498, 534, 903
Tru9I TTAA 5 cut(s) 327, 372, 498, 534, 903
TscAI CASTG 3 cut(s) 252, 274, 1027
TseI GCWGC 4 cut(s) 77, 376, 1064, 1067
TspDTI ATGAA 5 cut(s) 17, 551, 778, 940, 1121
TspRI CASTG 3 cut(s) 252, 274, 1027
VpaK11BI GGWCC 1 cut(s) 639
XapI RAATTY 1 cut(s) 959
XmnI GAANNNNTTC 1 cut(s) 1112
XspI CTAG 9 cut(s) 231, 252, 357, 555, 612, 858, 972, 1248, 1278
ZrmI AGTACT 2 cut(s) 458, 526
Zsp2I ATGCAT 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.