Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0015803

Physical Location & Seq

Genomic Coordinates Reverse (-)

12972401 .. 12974472

Gene Structure 2072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG148100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGAAGCATCTACCTTTGGCTCTCTTTGTCTTAGCTTTTTTGATCCACCAGCAATGTTTTCACATCCATATTGAAGCAGCAGGCGATGATTTTATCAGAACCAGAGGAGTGCAGTTTCTATTGAATGGCAGTCCATACTATGCAAATGGGTTCAATGCGTACTGGTTGATGTATATGGCCTCTGATCCTTCTCAGAGGTACAAAGTATCGTCGGTTTTTCGTGAAGCAACTAGCCATGGCCTCACAGTGGCTAGAACTTGGGCTTTCAGTGATGGAGGTTACAGACCCCTTCAATTCTCTCCTGGCTCTTATAATGACCAAATGTTTAAGGGGTTGGATTTTGTTATAGCTGAGGCTAGAAGGTATGGGATTAAGCTGCTACTAAGCTTGGTGAACAACTATGAGAACTTTGGTGGAAAGAAGCAGTATGTGAACTGGGCAAGAAGCAAGGGGCAGTACTTGACTTCCGATGATGATTTCTTTAGAAACCCTGTTGTTAAGGGTTTCTACAAGAACCATGTTAGTACTGTTCTTAACAGATACAACATCTACACTAGAGTTCATTACAAAGATGATCCAACAATTATGGCTTGGGAGCTTATCAATGAGCCTAGATGCATATCAGATCCTTCAGGAAGGACCATTCAGGAATGGATAAGGGAAATGGCTTCTCATGTGAAGTCAATAGATAGAAATCATTTACTGGAAGCAGGTTTAGAGGGATTTTATGGACAATCAACACCTCAGAGGATGAGACTCAATCCTGGTTTCCAAATAGGAACAGACTTCATTGCAAATAATAGGATCCCTGGGATTGATTTTGCAACAGTTCACTCCTATCCAGATCAATGGTTGTCTAGCTCAAACGATCAATATCAACTGTTTTTCTTGAACAACTGGCTTAATACTCACATCCAAGATTCACAGTACATTCTTCGAAAGCCGATCTTCATCGCAGAATTTGGGAAATCTAGGAAAGATCCTGGTTTCAACACGCACCAAAGAGACCTGCTATTCAACACTGTGTACTACAAGATATACTCTTCAGCCAAGAGAGGGGGAGCTGCTGCTGGGGGTTTGTTCTGGCAACTTCTTACTGAGGGCATGAACTCGTTCGGTGATGGGTACGAGATAGTTCTGAGCCAAAGTCCCTCAACTGCTAATGTAATAGCTCAACAATCTCACAAGCTCTATCAGATTAGGAAGATCTTTGTGAAGATAAGAAATGCTCAGAGGTGGAAGAGAGCTAGGGCCATTAGAAGGGATCAATGGTTGGCTAGAAACAAAGGCAAGCCTATAGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005576 GO:0005623 GO:0005975 GO:0005976 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009636 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009845 GO:0009900 GO:0009987 GO:0010035 GO:0010038 GO:0010047 GO:0010154 GO:0010412 GO:0015923 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0042545 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044464 GO:0045229 GO:0046355 GO:0046686 GO:0048046 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0061687 GO:0071554 GO:0071555 GO:0071585 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090351 GO:0097501 GO:0098754 GO:1901575 GO:1990059 GO:1990170

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

435

Amino Acids

50.31

Weight (kDa)

9.69

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH5_mannosidase	PF26410	30 - 363	8.6e-53	GH family 5 beta-mannosidase-like
Cellulase	PF00150	68 - 331	1.7e-08	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66460
malus_domestica	MD02G1143700.v1.1 MD15G1257000.v1.1
prunus_persica	Prupe.7G158000_v2.0.a1 Prupe.7G158000_v2.0.a1
pyrus_communis	pycom02g11360 pycom15g22490
rosa_chinensis	RchiOBHm_Chr2g0100951
rosa_laevigata	RLG00000017028
rosa_multiflora	Rmu_sc0001862.1_g000014
rosa_samantha	Rh2AG141600 Rh2BG146800 Rh2CG148100 Rh2DG147300
rosa_wichuraiana	Rw2G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	312
Acc36I	ACCTGC	2 cut(s)	701, 1017
AclWI	GGATC	8 cut(s)	37, 179, 569, 620, 799, 812, 974, 1272
AcsI	RAATTY	1 cut(s)	959
AcuI	CTGAAG	2 cut(s)	615, 1029
AfaI	GTAC	7 cut(s)	161, 200, 458, 526, 929, 1028, 1127
AfiI	CCNNNNNNNGG	3 cut(s)	247, 1056, 1260
AgsI	TTSAA	7 cut(s)	74, 124, 154, 293, 892, 991, 1018
AjnI	CCWGG	4 cut(s)	301, 763, 808, 982
Alw26I	GTCTC	2 cut(s)	748, 999
AlwI	GGATC	8 cut(s)	37, 179, 569, 620, 799, 812, 974, 1272
AoxI	GGCC	3 cut(s)	177, 238, 1251
ApeKI	GCWGC	4 cut(s)	77, 376, 1064, 1067
ApoI	RAATTY	1 cut(s)	959
Asp700I	GAANNNNTTC	1 cut(s)	1112
AspS9I	GGNCC	2 cut(s)	639, 1251
AsuHPI	GGTGA	2 cut(s)	403, 1130
AsuII	TTCGAA	1 cut(s)	937
AvaII	GGWCC	1 cut(s)	639
BamHI	GGATCC	1 cut(s)	804
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	4 cut(s)	89, 363, 1051, 1054
BccI	CCATC	2 cut(s)	266, 1115
BciT130I	CCWGG	4 cut(s)	303, 765, 810, 984
BcoDI	GTCTC	2 cut(s)	748, 999
BfaI	CTAG	9 cut(s)	231, 252, 357, 555, 612, 858, 972, 1248, 1278
BfmI	CTRYAG	1 cut(s)	1296
BfuAI	ACCTGC	2 cut(s)	701, 1017
BglII	AGATCT	1 cut(s)	1206
BisI	GCNGC	4 cut(s)	78, 377, 1065, 1068
BlsI	GCNGC	4 cut(s)	79, 378, 1066, 1069
BmcAI	AGTACT	2 cut(s)	458, 526
Bme1390I	CCNGG	4 cut(s)	303, 765, 810, 984
Bme18I	GGWCC	1 cut(s)	639
BmgT120I	GGNCC	2 cut(s)	639, 1251
BmiI	GGNNCC	1 cut(s)	806
BmrFI	CCNGG	4 cut(s)	303, 765, 810, 984
BmrI	ACTGGG	1 cut(s)	445
BmsI	GCATC	2 cut(s)	16, 605
BmuI	ACTGGG	1 cut(s)	445
Bpu10I	CCTNAGC	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	937
BsaBI	GATNNNNATC	4 cut(s)	619, 693, 873, 950
BsaI	GGTCTC	1 cut(s)	999
BsaJI	CCNNGG	3 cut(s)	235, 808, 809
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 1056, 1260
Bse1I	ACTGG	4 cut(s)	167, 440, 708, 902
Bse3DI	GCAATG	2 cut(s)	59, 789
Bse8I	GATNNNNATC	4 cut(s)	619, 693, 873, 950
BseBI	CCWGG	4 cut(s)	303, 765, 810, 984
BseDI	CCNNGG	3 cut(s)	235, 808, 809
BseGI	GGATG	3 cut(s)	63, 756, 912
BseJI	GATNNNNATC	4 cut(s)	619, 693, 873, 950
BseLI	CCNNNNNNNGG	3 cut(s)	247, 1056, 1260
BseMI	GCAATG	2 cut(s)	59, 789
BseMII	CTCAG	6 cut(s)	206, 342, 758, 1089, 1130, 1244
BseNI	ACTGG	4 cut(s)	167, 440, 708, 902
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	4 cut(s)	89, 363, 1051, 1054
BseYI	CCCAGC	1 cut(s)	1070
BsgI	GTGCAG	1 cut(s)	131
BshFI	GGCC	3 cut(s)	179, 240, 1253
BslFI	GGGAC	1 cut(s)	1134
BslI	CCNNNNNNNGG	3 cut(s)	247, 1056, 1260
BsmAI	GTCTC	2 cut(s)	748, 999
BsmFI	GGGAC	1 cut(s)	1134
BsnI	GGCC	3 cut(s)	179, 240, 1253
Bso31I	GGTCTC	1 cut(s)	999
Bsp119I	TTCGAA	1 cut(s)	937
Bsp19I	CCATGG	1 cut(s)	235
BspANI	GGCC	3 cut(s)	179, 240, 1253
BspCNI	CTCAG	6 cut(s)	205, 343, 757, 1090, 1131, 1243
BspLI	GGNNCC	1 cut(s)	806
BspMI	ACCTGC	2 cut(s)	701, 1017
BspPI	GGATC	8 cut(s)	37, 179, 569, 620, 799, 812, 974, 1272
BspT104I	TTCGAA	1 cut(s)	937
BspTNI	GGTCTC	1 cut(s)	999
BsrDI	GCAATG	2 cut(s)	59, 789
BsrI	ACTGG	4 cut(s)	167, 440, 708, 902
BssECI	CCNNGG	3 cut(s)	235, 808, 809
BssT1I	CCWWGG	1 cut(s)	235
Bst2UI	CCWGG	4 cut(s)	303, 765, 810, 984
Bst4CI	ACNGT	6 cut(s)	247, 529, 829, 882, 927, 1024
Bst6I	CTCTTC	2 cut(s)	1048, 1235
BstBI	TTCGAA	1 cut(s)	937
BstC8I	GCNNGC	2 cut(s)	82, 1292
BstDEI	CTNAG	8 cut(s)	31, 192, 351, 383, 744, 1098, 1139, 1230
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	3 cut(s)	63, 756, 912
BstMAI	GTCTC	2 cut(s)	748, 999
BstNI	CCWGG	4 cut(s)	303, 765, 810, 984
BstSCI	CCNGG	4 cut(s)	301, 763, 808, 982
BstSFI	CTRYAG	1 cut(s)	1296
BstV1I	GCAGC	4 cut(s)	89, 363, 1051, 1054
BstX2I	RGATCY	4 cut(s)	625, 804, 979, 1206
BstXI	CCANNNNNNTGG	1 cut(s)	849
BstYI	RGATCY	4 cut(s)	625, 804, 979, 1206
BsuRI	GGCC	3 cut(s)	179, 240, 1253
BtgI	CCRYGG	1 cut(s)	235
BtgZI	GCGATG	2 cut(s)	99, 937
BtsCI	GGATG	3 cut(s)	63, 756, 912
BtsIMutI	CAGTG	3 cut(s)	252, 274, 1020
BveI	ACCTGC	2 cut(s)	701, 1017
Cac8I	GCNNGC	2 cut(s)	82, 1292
Cfr13I	GGNCC	2 cut(s)	639, 1251
Csp6I	GTAC	7 cut(s)	160, 199, 457, 525, 928, 1027, 1126
CviAII	CATG	4 cut(s)	236, 518, 674, 1105
CviQI	GTAC	7 cut(s)	160, 199, 457, 525, 928, 1027, 1126
DdeI	CTNAG	8 cut(s)	31, 192, 351, 383, 744, 1098, 1139, 1230
Eam1104I	CTCTTC	2 cut(s)	1048, 1235
EarI	CTCTTC	2 cut(s)	1048, 1235
Eco130I	CCWWGG	1 cut(s)	235
Eco31I	GGTCTC	1 cut(s)	999
Eco47I	GGWCC	1 cut(s)	639
Eco57I	CTGAAG	2 cut(s)	615, 1029
EcoRII	CCWGG	4 cut(s)	301, 763, 808, 982
EcoT14I	CCWWGG	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	620
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	4 cut(s)	239, 521, 677, 1108
FalI	AAGNNNNNCTT	2 cut(s)	932, 964
FaqI	GGGAC	1 cut(s)	1134
FatI	CATG	4 cut(s)	235, 517, 673, 1104
Fnu4HI	GCNGC	4 cut(s)	78, 377, 1065, 1068
FokI	GGATG	3 cut(s)	50, 763, 899
Fsp4HI	GCNGC	4 cut(s)	78, 377, 1065, 1068
FspBI	CTAG	9 cut(s)	231, 252, 357, 555, 612, 858, 972, 1248, 1278
GluI	GCNGC	4 cut(s)	78, 377, 1065, 1068
GsaI	CCCAGC	1 cut(s)	1074
HaeIII	GGCC	3 cut(s)	179, 240, 1253
Hin1II	CATG	4 cut(s)	239, 521, 677, 1108
HindIII	AAGCTT	1 cut(s)	385
HinfI	GANTC	2 cut(s)	756, 920
HphI	GGTGA	2 cut(s)	403, 1130
Hpy166II	GTNNAC	4 cut(s)	394, 433, 832, 1027
Hpy188I	TCNGA	9 cut(s)	98, 184, 195, 469, 625, 747, 1140, 1197, 1233
Hpy188III	TCNNGA	5 cut(s)	221, 633, 647, 842, 889
Hpy8I	GTNNAC	4 cut(s)	394, 433, 832, 1027
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	6 cut(s)	198, 299, 354, 630, 639, 1254
HpyCH4III	ACNGT	6 cut(s)	247, 529, 829, 882, 927, 1024
HpyCH4V	TGCA	5 cut(s)	112, 143, 618, 794, 824
HpyF3I	CTNAG	8 cut(s)	31, 192, 351, 383, 744, 1098, 1139, 1230
Hsp92II	CATG	4 cut(s)	239, 521, 677, 1108
LmnI	GCTCC	2 cut(s)	595, 1061
Lsp1109I	GCAGC	4 cut(s)	89, 363, 1051, 1054
LweI	GCATC	2 cut(s)	16, 605
MaeI	CTAG	9 cut(s)	231, 252, 357, 555, 612, 858, 972, 1248, 1278
MaeIII	GTNAC	1 cut(s)	278
MboII	GAAGA	6 cut(s)	926, 940, 1035, 1216, 1228, 1252
MflI	RGATCY	4 cut(s)	625, 804, 979, 1206
MluCI	AATT	4 cut(s)	293, 582, 959, 1303
MlyI	GAGTC	1 cut(s)	750
MmeI	TCCRAC	2 cut(s)	315, 602
Mph1103I	ATGCAT	1 cut(s)	620
MroXI	GAANNNNTTC	1 cut(s)	1112
MseI	TTAA	5 cut(s)	327, 372, 498, 534, 903
MspR9I	CCNGG	4 cut(s)	303, 765, 810, 984
MvaI	CCWGG	4 cut(s)	303, 765, 810, 984
NcoI	CCATGG	1 cut(s)	235
NlaIII	CATG	4 cut(s)	239, 521, 677, 1108
NlaIV	GGNNCC	1 cut(s)	806
NsiI	ATGCAT	1 cut(s)	620
NspV	TTCGAA	1 cut(s)	937
PasI	CCCWGGG	1 cut(s)	809
PdmI	GAANNNNTTC	1 cut(s)	1112
PfeI	GAWTC	1 cut(s)	920
PkrI	GCNGC	4 cut(s)	79, 378, 1066, 1069
PleI	GAGTC	1 cut(s)	750
PpsI	GAGTC	1 cut(s)	750
PsiI	TTATAA	1 cut(s)	312
Psp6I	CCWGG	4 cut(s)	301, 763, 808, 982
PspFI	CCCAGC	1 cut(s)	1070
PspGI	CCWGG	4 cut(s)	301, 763, 808, 982
PspN4I	GGNNCC	1 cut(s)	806
PspPI	GGNCC	2 cut(s)	639, 1251
PsuI	RGATCY	4 cut(s)	625, 804, 979, 1206
RsaI	GTAC	7 cut(s)	161, 200, 458, 526, 929, 1028, 1127
RsaNI	GTAC	7 cut(s)	160, 199, 457, 525, 928, 1027, 1126
SaqAI	TTAA	5 cut(s)	327, 372, 498, 534, 903
SatI	GCNGC	4 cut(s)	78, 377, 1065, 1068
Sau96I	GGNCC	2 cut(s)	639, 1251
ScaI	AGTACT	2 cut(s)	458, 526
SchI	GAGTC	1 cut(s)	750
ScrFI	CCNGG	4 cut(s)	303, 765, 810, 984
SfaNI	GCATC	2 cut(s)	16, 605
SfcI	CTRYAG	1 cut(s)	1296
SfuI	TTCGAA	1 cut(s)	937
SinI	GGWCC	1 cut(s)	639
Sse9I	AATT	4 cut(s)	293, 582, 959, 1303
SspMI	CTAG	9 cut(s)	231, 252, 357, 555, 612, 858, 972, 1248, 1278
StyD4I	CCNGG	4 cut(s)	301, 763, 808, 982
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	6 cut(s)	247, 529, 829, 882, 927, 1024
TaqI	TCGA	1 cut(s)	937
TasI	AATT	4 cut(s)	293, 582, 959, 1303
TatI	WGTACW	4 cut(s)	456, 524, 927, 1026
TfiI	GAWTC	1 cut(s)	920
Tru1I	TTAA	5 cut(s)	327, 372, 498, 534, 903
Tru9I	TTAA	5 cut(s)	327, 372, 498, 534, 903
TscAI	CASTG	3 cut(s)	252, 274, 1027
TseI	GCWGC	4 cut(s)	77, 376, 1064, 1067
TspDTI	ATGAA	5 cut(s)	17, 551, 778, 940, 1121
TspRI	CASTG	3 cut(s)	252, 274, 1027
VpaK11BI	GGWCC	1 cut(s)	639
XapI	RAATTY	1 cut(s)	959
XmnI	GAANNNNTTC	1 cut(s)	1112
XspI	CTAG	9 cut(s)	231, 252, 357, 555, 612, 858, 972, 1248, 1278
ZrmI	AGTACT	2 cut(s)	458, 526
Zsp2I	ATGCAT	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.