Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0015803

Physical Location & Seq

Genomic Coordinates Reverse (-)

8044532 .. 8046431

Gene Structure 1900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g11360.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAAGCATCCATATTTTGCTCTTCTTTTAGCAATTTTAATCCACCAACAGTGTTTTATTACTCCAATCCATGTTTCAGCAGCAGGTGATAATTTCATCAGAGTGAGGGGAGTGCATTTTCTTCTCAACGGCAGCCCTTACTATGCAAACGGCTTCAACGGCTACTGGCTAATGTATGTGGCTTCCGACCCGTCTCAGAGGCACAAAGTCTCTTCTGTTTTCCGTGAAGCAACTAGCCACGGGCTCACCGTGGCTCGAACTTGGGCTTTCAGTGATGGAGGTTACAGGCCTCTTCAGTTCTCCCCTGGCTCATACAATGAGCAAATGTTTAAGGGGTTGGATTTTGTTATAGCTGAGGCCAGAAGATATGGGATTAAGCTGATATTAAGCTTGGTGAACAACTATGAGAGCTTTGGAGGAAGAAAGCAGTATGTGAATTGGGCAAGAAGTCAAGGGCAGTACCTCACATCTGATGACGATTTCTTCAGGAACCCCGTTGTGAAGGGTTACTACAAGAACCATGTAACCACTGTTCTTAACAGATATAACAGCTACACTGGAGTTCATTACAAAGATGACCCAACAATTATGGCCTGGGAACTTATTAATGAACCTAGATGCACATCAGATCCTTCGGGAAGGACTATTCAGGCATGGATAATGGAAATGGCTTCACACGTGAAGTCAATGGACAGAAACCACTTACTGGAAGCTGGTCTAGAGGGATTTTATGGACAAGCAATACCTCAGAGGATGAGTCTCAATCCCCCTTTCAATATCGGAACAGACTTTATCGCGAATAATCGGATTCCTGGCATCGATTTTGCAACAGTTCACTCGTATCCTGATCAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005576 GO:0005623 GO:0005975 GO:0005976 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009636 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009845 GO:0009900 GO:0009987 GO:0010035 GO:0010038 GO:0010047 GO:0010154 GO:0010412 GO:0015923 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0042545 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044464 GO:0045229 GO:0046355 GO:0046686 GO:0048046 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0061687 GO:0071554 GO:0071555 GO:0071585 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090351 GO:0097501 GO:0098754 GO:1901575 GO:1990059 GO:1990170

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

286

Amino Acids

32.59

Weight (kDa)

8.72

Isoelectric Point (pI)

28.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66460
malus_domestica	MD02G1143700.v1.1 MD15G1257000.v1.1
prunus_persica	Prupe.7G158000_v2.0.a1 Prupe.7G158000_v2.0.a1
pyrus_communis	pycom02g11360 pycom15g22490
rosa_chinensis	RchiOBHm_Chr2g0100951
rosa_laevigata	RLG00000017028
rosa_multiflora	Rmu_sc0001862.1_g000014
rosa_samantha	Rh2AG141600 Rh2BG146800 Rh2CG148100 Rh2DG147300
rosa_wichuraiana	Rw2G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	74
AccB7I	CCANNNNNTGG	1 cut(s)	706
AccII	CGCG	1 cut(s)	797
AclWI	GGATC	1 cut(s)	623
AcuI	CTGAAG	2 cut(s)	278, 469
AcvI	CACGTG	1 cut(s)	679
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	1 cut(s)	706
AflIII	ACRYGT	1 cut(s)	676
AgsI	TTSAA	2 cut(s)	157, 775
AjnI	CCWGG	3 cut(s)	304, 593, 811
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AluBI	AGCT	6 cut(s)	353, 379, 390, 411, 552, 713
AluI	AGCT	6 cut(s)	353, 379, 390, 411, 552, 713
Alw26I	GTCTC	3 cut(s)	198, 214, 764
AlwI	GGATC	1 cut(s)	623
AoxI	GGCC	3 cut(s)	287, 357, 591
ApeKI	GCWGC	2 cut(s)	80, 132
AseI	ATTAAT	1 cut(s)	606
AsuHPI	GGTGA	3 cut(s)	98, 238, 406
BanII	GRGCYC	1 cut(s)	246
BarI	GAAGNNNNNNTAC	2 cut(s)	494, 526
BbrPI	CACGTG	1 cut(s)	679
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	92, 144
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	3 cut(s)	145, 166, 175
BciT130I	CCWGG	3 cut(s)	306, 595, 813
BciVI	GTATCC	1 cut(s)	852
BclI	TGATCA	1 cut(s)	847
BcoDI	GTCTC	3 cut(s)	198, 214, 764
BfaI	CTAG	3 cut(s)	234, 615, 719
BfuAI	ACCTGC	1 cut(s)	74
BfuI	GTATCC	1 cut(s)	852
BisI	GCNGC	2 cut(s)	81, 133
BlsI	GCNGC	2 cut(s)	82, 134
Bme1390I	CCNGG	3 cut(s)	306, 595, 813
BmiI	GGNNCC	1 cut(s)	491
BmrFI	CCNGG	3 cut(s)	306, 595, 813
BmsI	GCATC	3 cut(s)	16, 608, 825
BpmI	CTGGAG	1 cut(s)	579
Bpu10I	CCTNAGC	1 cut(s)	354
Bsa29I	ATCGAT	1 cut(s)	819
BsaAI	YACGTR	1 cut(s)	679
BsaBI	GATNNNNATC	1 cut(s)	622
BsaJI	CCNNGG	4 cut(s)	238, 249, 304, 594
Bsc4I	CCNNNNNNNGG	1 cut(s)	706
Bse1I	ACTGG	3 cut(s)	170, 562, 711
Bse8I	GATNNNNATC	1 cut(s)	622
BseBI	CCWGG	3 cut(s)	306, 595, 813
BseCI	ATCGAT	1 cut(s)	819
BseDI	CCNNGG	4 cut(s)	238, 249, 304, 594
BseGI	GGATG	2 cut(s)	7, 759
BseJI	GATNNNNATC	1 cut(s)	622
BseLI	CCNNNNNNNGG	1 cut(s)	706
BseMII	CTCAG	3 cut(s)	209, 345, 761
BseNI	ACTGG	3 cut(s)	170, 562, 711
BseXI	GCAGC	2 cut(s)	92, 144
Bsh1236I	CGCG	1 cut(s)	797
BshFI	GGCC	3 cut(s)	289, 359, 593
BshVI	ATCGAT	1 cut(s)	819
BslI	CCNNNNNNNGG	1 cut(s)	706
BsmAI	GTCTC	3 cut(s)	198, 214, 764
BsmBI	CGTCTC	1 cut(s)	198
BsnI	GGCC	3 cut(s)	289, 359, 593
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	628, 847
Bsp68I	TCGCGA	1 cut(s)	797
BspANI	GGCC	3 cut(s)	289, 359, 593
BspCNI	CTCAG	3 cut(s)	208, 346, 760
BspDI	ATCGAT	1 cut(s)	819
BspFNI	CGCG	1 cut(s)	797
BspLI	GGNNCC	1 cut(s)	491
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	623
BspQI	GCTCTTC	1 cut(s)	27
BsrI	ACTGG	3 cut(s)	170, 562, 711
BssECI	CCNNGG	4 cut(s)	238, 249, 304, 594
BssMI	GATC	2 cut(s)	628, 847
Bst2UI	CCWGG	3 cut(s)	306, 595, 813
Bst4CI	ACNGT	4 cut(s)	51, 250, 532, 832
Bst6I	CTCTTC	3 cut(s)	27, 217, 297
BstBAI	YACGTR	1 cut(s)	679
BstDEI	CTNAG	3 cut(s)	195, 354, 747
BstDSI	CCRYGG	2 cut(s)	238, 249
BstF5I	GGATG	2 cut(s)	7, 759
BstFNI	CGCG	1 cut(s)	797
BstKTI	GATC	2 cut(s)	631, 850
BstMAI	GTCTC	3 cut(s)	198, 214, 764
BstMBI	GATC	2 cut(s)	628, 847
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	3 cut(s)	306, 595, 813
BstSCI	CCNGG	3 cut(s)	304, 593, 811
BstUI	CGCG	1 cut(s)	797
BstV1I	GCAGC	2 cut(s)	92, 144
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
Bsu15I	ATCGAT	1 cut(s)	819
BsuI	GTATCC	1 cut(s)	852
BsuRI	GGCC	3 cut(s)	289, 359, 593
BsuTUI	ATCGAT	1 cut(s)	819
BtgI	CCRYGG	2 cut(s)	238, 249
BtsCI	GGATG	2 cut(s)	7, 759
BtsIMutI	CAGTG	4 cut(s)	56, 277, 528, 555
BtuMI	TCGCGA	1 cut(s)	797
BveI	ACCTGC	1 cut(s)	74
ClaI	ATCGAT	1 cut(s)	819
Csp6I	GTAC	1 cut(s)	460
CviAII	CATG	3 cut(s)	71, 521, 654
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	3 cut(s)	195, 354, 747
DpnI	GATC	2 cut(s)	630, 849
DpnII	GATC	2 cut(s)	628, 847
Eam1104I	CTCTTC	3 cut(s)	27, 217, 297
EarI	CTCTTC	3 cut(s)	27, 217, 297
Eco147I	AGGCCT	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	246
Eco57I	CTGAAG	2 cut(s)	278, 469
Eco72I	CACGTG	1 cut(s)	679
EcoRII	CCWGG	3 cut(s)	304, 593, 811
EcoT38I	GRGCYC	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	3 cut(s)	74, 524, 657
FatI	CATG	3 cut(s)	70, 520, 653
FbaI	TGATCA	1 cut(s)	847
Fnu4HI	GCNGC	2 cut(s)	81, 133
FokI	GGATG	1 cut(s)	766
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	2 cut(s)	81, 133
FspBI	CTAG	3 cut(s)	234, 615, 719
GluI	GCNGC	2 cut(s)	81, 133
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	3 cut(s)	289, 359, 593
Hin1II	CATG	3 cut(s)	74, 524, 657
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	2 cut(s)	757, 808
HphI	GGTGA	3 cut(s)	98, 238, 406
Hpy166II	GTNNAC	2 cut(s)	397, 835
Hpy188I	TCNGA	8 cut(s)	101, 187, 198, 472, 628, 750, 782, 807
Hpy188III	TCNNGA	5 cut(s)	487, 636, 719, 796, 845
Hpy8I	GTNNAC	2 cut(s)	397, 835
HpyAV	CCTTC	3 cut(s)	496, 633, 642
HpyCH4III	ACNGT	4 cut(s)	51, 250, 532, 832
HpyCH4IV	ACGT	1 cut(s)	678
HpyCH4V	TGCA	4 cut(s)	115, 146, 621, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	3 cut(s)	195, 354, 747
HpySE526I	ACGT	1 cut(s)	678
Hsp92II	CATG	3 cut(s)	74, 524, 657
Ksp22I	TGATCA	1 cut(s)	847
Kzo9I	GATC	2 cut(s)	628, 847
LguI	GCTCTTC	1 cut(s)	27
Lsp1109I	GCAGC	2 cut(s)	92, 144
LweI	GCATC	3 cut(s)	16, 608, 825
MaeI	CTAG	3 cut(s)	234, 615, 719
MaeII	ACGT	1 cut(s)	678
MaeIII	GTNAC	3 cut(s)	281, 506, 523
MalI	GATC	2 cut(s)	630, 849
MboI	GATC	2 cut(s)	628, 847
MboII	GAAGA	7 cut(s)	14, 113, 204, 284, 375, 432, 475
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	4 cut(s)	33, 91, 436, 585
MlyI	GAGTC	1 cut(s)	766
MmeI	TCCRAC	2 cut(s)	210, 318
MseI	TTAA	6 cut(s)	38, 330, 375, 386, 537, 606
MslI	CAYNNNNRTG	1 cut(s)	101
MspR9I	CCNGG	3 cut(s)	306, 595, 813
MvaI	CCWGG	3 cut(s)	306, 595, 813
MvnI	CGCG	1 cut(s)	797
MwoI	GCNNNNNNNGC	1 cut(s)	159
NdeII	GATC	2 cut(s)	628, 847
NlaIII	CATG	3 cut(s)	74, 524, 657
NlaIV	GGNNCC	1 cut(s)	491
NruI	TCGCGA	1 cut(s)	797
PaqCI	CACCTGC	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	808
PflMI	CCANNNNNTGG	1 cut(s)	706
PkrI	GCNGC	2 cut(s)	82, 134
PleI	GAGTC	1 cut(s)	765
PmaCI	CACGTG	1 cut(s)	679
PmlI	CACGTG	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	765
Ppu21I	YACGTR	1 cut(s)	679
PshBI	ATTAAT	1 cut(s)	606
Psp6I	CCWGG	3 cut(s)	304, 593, 811
PspCI	CACGTG	1 cut(s)	679
PspGI	CCWGG	3 cut(s)	304, 593, 811
PspN4I	GGNNCC	1 cut(s)	491
PsrI	GAACNNNNNNTAC	2 cut(s)	516, 548
PsuI	RGATCY	1 cut(s)	628
RruI	TCGCGA	1 cut(s)	797
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
RseI	CAYNNNNRTG	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	6 cut(s)	38, 330, 375, 386, 537, 606
SatI	GCNGC	2 cut(s)	81, 133
Sau3AI	GATC	2 cut(s)	628, 847
SchI	GAGTC	1 cut(s)	766
ScrFI	CCNGG	3 cut(s)	306, 595, 813
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	3 cut(s)	16, 608, 825
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	4 cut(s)	33, 91, 436, 585
SseBI	AGGCCT	1 cut(s)	289
SspMI	CTAG	3 cut(s)	234, 615, 719
StuI	AGGCCT	1 cut(s)	289
StyD4I	CCNGG	3 cut(s)	304, 593, 811
TaaI	ACNGT	4 cut(s)	51, 250, 532, 832
TaiI	ACGT	1 cut(s)	681
TaqI	TCGA	2 cut(s)	256, 819
TasI	AATT	4 cut(s)	33, 91, 436, 585
TfiI	GAWTC	1 cut(s)	808
Tru1I	TTAA	6 cut(s)	38, 330, 375, 386, 537, 606
Tru9I	TTAA	6 cut(s)	38, 330, 375, 386, 537, 606
TscAI	CASTG	4 cut(s)	56, 277, 535, 562
TseI	GCWGC	2 cut(s)	80, 132
TspDTI	ATGAA	4 cut(s)	17, 85, 554, 624
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	4 cut(s)	56, 277, 535, 562
Van91I	CCANNNNNTGG	1 cut(s)	706
VspI	ATTAAT	1 cut(s)	606
XbaI	TCTAGA	1 cut(s)	718
XspI	CTAG	3 cut(s)	234, 615, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.