AT5G67350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016139
Physical Location & Seq
Reverse (-)
26868290 .. 26869719
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G67350.1

Sequence Viewer

Length: 909 bp
ATGGCGATGACTTGTACGGAAGACGATGACAAAACCCTTTTGATCTCTCATCGCTATCAAGAAGACGACGATGACGTAGAAGAAGAAGAAGAAGAAGAAGCTTTGTCTCTGTGTGATTTGCCGAACGAGAAGGGCGAATTACGATCGATTGTCAAAGAAGAAGATGAAGAATTCGATTCCGGATTTGAATTTGGAATCGGGTCATCGTTTCGAGCCGGGTCGGATTCATGTGAACCAGCTCCGGAGATGAGTACAGCTGATGAATTATTCTTCAAAGGCCGAATTCTGCCGTTACGTCACTCCGTCAGTTTAGACGCCGGACTTAACGAGCCGACCCGGTTGATTACAAGATCCGAGTCGGTTGAATTCAGACGAACCGGAATTATTAGATCGGACCGGAAAATCAAAAACAATTTCATCGATTATAGTCAACCAAGTCCACAACCACAGATTCGAAGATCATCGAGCATGACGGCTCGTGTGAATTCAATCAGAAACCCTAAATCATCCTCGATTTGGGATTTTCTCAGGCTAGGACTCGTCCGTACACCGGAGATAGAACTCCGAACCACCGCCGGAAACGCGAAATTGTCAGTGAGTCGGAATAGTAGCTGCAGTAGTACAAGCACGAGTTCGAATTCGAAGAAAATAGGATCAGGTGAATCGAGATCGAGGAATAGGAGGAGAAGCTTTATGTTCTCGGATTGTAAATGTTCGGTGTCGACGGAGACGAAGATGGCACCTGTGAAGATTAAAGTGTCCTCCGGTGAGACGGAGGAGAAACAGAGGATGATGGAGAAGAAGACGGCGAAGAAAGAAGAGAAATCGGCGATGGCGAGGAAGAGAACGTTTGAGTGGTTATCACAGGTTGGTTTTGTCGTCGATCATGGAAGACGAACCTTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

302

Amino Acids

34.14

Weight (kDa)

6.42

Isoelectric Point (pI)

74.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67350
fragaria_vesca FvH4_1g17130
malus_domestica MD02G1181700.v1.1 MD15G1292600.v1.1
prunus_persica Prupe.6G224800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107301
rosa_laevigata RLG00000017569
rosa_multiflora Rmu_sc0006416.1_g000002
rosa_roxburghii Rroxscaffold_2G00136450
rosa_rugosa Rorug02G0141700
rosa_samantha Rh2AG192600 Rh2BG204500 Rh2CG197800 Rh2DG199800
rosa_wichuraiana Rw2G015240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 739
AccI GTMKAC 1 cut(s) 722
AccII CGCG 1 cut(s) 584
AccIII TCCGGA 2 cut(s) 179, 241
AciI CCGC 1 cut(s) 573
AclI AACGTT 1 cut(s) 848
AclWI GGATC 2 cut(s) 345, 661
AcsI RAATTY 6 cut(s) 170, 188, 282, 365, 484, 637
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 4 cut(s) 16, 253, 547, 622
AfiI CCNNNNNNNGG 2 cut(s) 516, 550
AgsI TTSAA 4 cut(s) 188, 274, 365, 489
AluBI AGCT 5 cut(s) 101, 239, 257, 612, 690
AluI AGCT 5 cut(s) 101, 239, 257, 612, 690
Alw26I GTCTC 3 cut(s) 111, 722, 764
AlwI GGATC 2 cut(s) 345, 661
Aor13HI TCCGGA 2 cut(s) 179, 241
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 1 cut(s) 612
ApoI RAATTY 6 cut(s) 170, 188, 282, 365, 484, 637
AspS9I GGNCC 1 cut(s) 394
AsuC2I CCSGG 2 cut(s) 217, 337
AsuHPI GGTGA 2 cut(s) 671, 779
AsuII TTCGAA 3 cut(s) 454, 635, 641
AvaII GGWCC 1 cut(s) 394
BanI GGYRCC 1 cut(s) 739
BauI CACGAG 2 cut(s) 477, 628
BbsI GAAGAC 4 cut(s) 27, 69, 809, 898
BbvI GCAGC 1 cut(s) 599
BccI CCATC 3 cut(s) 730, 787, 826
BceAI ACGGC 3 cut(s) 274, 489, 822
BcnI CCSGG 2 cut(s) 217, 337
BcoDI GTCTC 3 cut(s) 111, 722, 764
BfaI CTAG 1 cut(s) 533
BfmI CTRYAG 1 cut(s) 613
BisI GCNGC 1 cut(s) 613
BlsI GCNGC 1 cut(s) 614
Bme1390I CCNGG 2 cut(s) 217, 337
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 1 cut(s) 741
BmrFI CCNGG 2 cut(s) 217, 337
BpiI GAAGAC 4 cut(s) 27, 69, 809, 898
Bpu14I TTCGAA 3 cut(s) 454, 635, 641
BpuMI CCSGG 2 cut(s) 217, 337
Bsa29I ATCGAT 2 cut(s) 146, 420
BsaHI GRCGYC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 900
BsaWI WCCGGW 6 cut(s) 179, 241, 377, 396, 550, 764
Bsc4I CCNNNNNNNGG 2 cut(s) 516, 550
BseAI TCCGGA 2 cut(s) 179, 241
BseCI ATCGAT 2 cut(s) 146, 420
BseDI CCNNGG 1 cut(s) 900
BseGI GGATG 2 cut(s) 506, 795
BseLI CCNNNNNNNGG 2 cut(s) 516, 550
BseMII CTCAG 1 cut(s) 541
BseRI GAGGAG 2 cut(s) 697, 791
BseXI GCAGC 1 cut(s) 599
Bsh1236I CGCG 1 cut(s) 584
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 1 cut(s) 279
BshNI GGYRCC 1 cut(s) 739
BshVI ATCGAT 2 cut(s) 146, 420
BsiEI CGRYCG 1 cut(s) 146
BslI CCNNNNNNNGG 2 cut(s) 516, 550
BsmAI GTCTC 3 cut(s) 111, 722, 764
BsmBI CGTCTC 2 cut(s) 722, 764
BsnI GGCC 1 cut(s) 279
Bsp119I TTCGAA 3 cut(s) 454, 635, 641
Bsp13I TCCGGA 2 cut(s) 179, 241
Bsp143I GATC 8 cut(s) 42, 143, 350, 389, 458, 653, 668, 883
BspACI CCGC 1 cut(s) 573
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 540
BspDI ATCGAT 2 cut(s) 146, 420
BspEI TCCGGA 2 cut(s) 179, 241
BspFNI CGCG 1 cut(s) 584
BspLI GGNNCC 1 cut(s) 741
BspMAI CTGCAG 1 cut(s) 617
BspPI GGATC 2 cut(s) 345, 661
BspT104I TTCGAA 3 cut(s) 454, 635, 641
BspT107I GGYRCC 1 cut(s) 739
BssECI CCNNGG 1 cut(s) 900
BssMI GATC 8 cut(s) 42, 143, 350, 389, 458, 653, 668, 883
BssNI GRCGYC 1 cut(s) 315
BssSI CACGAG 2 cut(s) 477, 628
BssT1I CCWWGG 1 cut(s) 900
Bst2BI CACGAG 2 cut(s) 477, 628
Bst6I CTCTTC 2 cut(s) 813, 836
BstACI GRCGYC 1 cut(s) 315
BstBI TTCGAA 3 cut(s) 454, 635, 641
BstDEI CTNAG 1 cut(s) 527
BstF5I GGATG 2 cut(s) 506, 795
BstFNI CGCG 1 cut(s) 584
BstKTI GATC 8 cut(s) 45, 146, 353, 392, 461, 656, 671, 886
BstMAI GTCTC 3 cut(s) 111, 722, 764
BstMBI GATC 8 cut(s) 42, 143, 350, 389, 458, 653, 668, 883
BstMCI CGRYCG 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstSCI CCNGG 2 cut(s) 215, 335
BstSFI CTRYAG 1 cut(s) 613
BstUI CGCG 1 cut(s) 584
BstV1I GCAGC 1 cut(s) 599
BstV2I GAAGAC 4 cut(s) 27, 69, 809, 898
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
Bsu15I ATCGAT 2 cut(s) 146, 420
BsuRI GGCC 1 cut(s) 279
BsuTUI ATCGAT 2 cut(s) 146, 420
BtgZI GCGATG 3 cut(s) 20, 35, 845
BtsCI GGATG 2 cut(s) 506, 795
BtsIMutI CAGTG 1 cut(s) 600
Cfr13I GGNCC 1 cut(s) 394
ClaI ATCGAT 2 cut(s) 146, 420
CpoI CGGWCCG 1 cut(s) 394
CseI GACGC 1 cut(s) 323
Csp6I GTAC 4 cut(s) 15, 252, 546, 621
CspI CGGWCCG 1 cut(s) 394
CviAII CATG 3 cut(s) 228, 469, 887
CviQI GTAC 4 cut(s) 15, 252, 546, 621
DdeI CTNAG 1 cut(s) 527
DpnI GATC 8 cut(s) 44, 145, 352, 391, 460, 655, 670, 885
DpnII GATC 8 cut(s) 42, 143, 350, 389, 458, 653, 668, 883
Eam1104I CTCTTC 2 cut(s) 813, 836
EarI CTCTTC 2 cut(s) 813, 836
Eco130I CCWWGG 1 cut(s) 900
Eco47I GGWCC 1 cut(s) 394
EcoRI GAATTC 5 cut(s) 170, 282, 365, 484, 637
EcoT14I CCWWGG 1 cut(s) 900
ErhI CCWWGG 1 cut(s) 900
Esp3I CGTCTC 2 cut(s) 722, 764
FaeI CATG 3 cut(s) 231, 472, 890
FaiI YATR 5 cut(s) 229, 426, 470, 695, 888
FatI CATG 3 cut(s) 227, 468, 886
FblI GTMKAC 1 cut(s) 722
Fnu4HI GCNGC 1 cut(s) 613
FokI GGATG 2 cut(s) 493, 802
Fsp4HI GCNGC 1 cut(s) 613
FspBI CTAG 1 cut(s) 533
GluI GCNGC 1 cut(s) 613
HaeIII GGCC 1 cut(s) 279
HgaI GACGC 1 cut(s) 323
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 3 cut(s) 231, 472, 890
HincII GTYRAC 2 cut(s) 431, 723
HindII GTYRAC 2 cut(s) 431, 723
HindIII AAGCTT 2 cut(s) 99, 688
HinfI GANTC 8 cut(s) 176, 195, 224, 356, 451, 537, 598, 662
HphI GGTGA 2 cut(s) 671, 779
Hpy166II GTNNAC 5 cut(s) 233, 431, 440, 548, 723
Hpy188I TCNGA 9 cut(s) 223, 355, 371, 394, 494, 566, 603, 703, 908
Hpy188III TCNNGA 4 cut(s) 59, 180, 242, 666
Hpy8I GTNNAC 5 cut(s) 233, 431, 440, 548, 723
Hpy99I CGWCG 3 cut(s) 71, 727, 884
HpyAV CCTTC 1 cut(s) 124
HpyCH4IV ACGT 3 cut(s) 75, 295, 848
HpyCH4V TGCA 1 cut(s) 615
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
HpyF3I CTNAG 1 cut(s) 527
HpySE526I ACGT 3 cut(s) 75, 295, 848
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 3 cut(s) 231, 472, 890
Kpn2I TCCGGA 2 cut(s) 179, 241
Kzo9I GATC 8 cut(s) 42, 143, 350, 389, 458, 653, 668, 883
LmnI GCTCC 1 cut(s) 244
Lsp1109I GCAGC 1 cut(s) 599
MaeI CTAG 1 cut(s) 533
MaeII ACGT 3 cut(s) 75, 295, 848
MaeIII GTNAC 2 cut(s) 291, 296
MalI GATC 8 cut(s) 44, 145, 352, 391, 460, 655, 670, 885
MboI GATC 8 cut(s) 42, 143, 350, 389, 458, 653, 668, 883
MflI RGATCY 1 cut(s) 350
MlyI GAGTC 3 cut(s) 365, 531, 607
MmeI TCCRAC 2 cut(s) 201, 581
MnlI CCTC 7 cut(s) 520, 666, 675, 769, 772, 780, 831
MroI TCCGGA 2 cut(s) 179, 241
MseI TTAA 2 cut(s) 324, 753
MspA1I CMGCKG 1 cut(s) 257
MspR9I CCNGG 2 cut(s) 217, 337
MvnI CGCG 1 cut(s) 584
MwoI GCNNNNNNNGC 1 cut(s) 581
NciI CCSGG 2 cut(s) 217, 337
NdeII GATC 8 cut(s) 42, 143, 350, 389, 458, 653, 668, 883
NlaIII CATG 3 cut(s) 231, 472, 890
NlaIV GGNNCC 1 cut(s) 741
NmuCI GTSAC 1 cut(s) 296
NspV TTCGAA 3 cut(s) 454, 635, 641
PcsI WCGNNNNNNNCGW 4 cut(s) 72, 132, 728, 833
PfeI GAWTC 5 cut(s) 176, 195, 224, 451, 662
PkrI GCNGC 1 cut(s) 614
Ple19I CGATCG 1 cut(s) 146
PleI GAGTC 3 cut(s) 364, 531, 606
PpsI GAGTC 3 cut(s) 364, 531, 606
Psp1406I AACGTT 1 cut(s) 848
PspN4I GGNNCC 1 cut(s) 741
PspPI GGNCC 1 cut(s) 394
PstI CTGCAG 1 cut(s) 617
PsuI RGATCY 1 cut(s) 350
PvuI CGATCG 1 cut(s) 146
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 4 cut(s) 16, 253, 547, 622
RsaNI GTAC 4 cut(s) 15, 252, 546, 621
Rsr2I CGGWCCG 1 cut(s) 394
RsrII CGGWCCG 1 cut(s) 394
SalI GTCGAC 1 cut(s) 721
SaqAI TTAA 2 cut(s) 324, 753
SatI GCNGC 1 cut(s) 613
Sau3AI GATC 8 cut(s) 42, 143, 350, 389, 458, 653, 668, 883
Sau96I GGNCC 1 cut(s) 394
SchI GAGTC 3 cut(s) 365, 531, 607
ScrFI CCNGG 2 cut(s) 217, 337
SfcI CTRYAG 1 cut(s) 613
SfuI TTCGAA 3 cut(s) 454, 635, 641
SinI GGWCC 1 cut(s) 394
SsiI CCGC 1 cut(s) 573
SspMI CTAG 1 cut(s) 533
StyD4I CCNGG 2 cut(s) 215, 335
StyI CCWWGG 1 cut(s) 900
TaiI ACGT 3 cut(s) 78, 298, 851
TatI WGTACW 2 cut(s) 251, 620
TfiI GAWTC 5 cut(s) 176, 195, 224, 451, 662
Tru1I TTAA 2 cut(s) 324, 753
Tru9I TTAA 2 cut(s) 324, 753
TscAI CASTG 1 cut(s) 600
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 1 cut(s) 612
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 4 cut(s) 180, 216, 276, 406
TspGWI ACGGA 5 cut(s) 32, 292, 533, 740, 788
TspRI CASTG 1 cut(s) 600
VpaK11BI GGWCC 1 cut(s) 394
XapI RAATTY 6 cut(s) 170, 188, 282, 365, 484, 637
XmiI GTMKAC 1 cut(s) 722
XspI CTAG 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.