RLG00000017569

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016139
Physical Location & Seq
Reverse (-)
18366024 .. 18367118
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017569

Sequence Viewer

Length: 1095 bp
ATGGCAACAGATTCATCATCCTCCGAGCAGTTGGAGGAAGATCTATCACTATCAGATCTTCCCCACAATTTCATCAAACCAGATCGAAACCACTCAACTAGTACTAAACCTGATAGTGGTAAGGTCATCGAAGCCGAAGAAGAATTCGACTTTGGCTCTTCCATGCGCGGCAGCTCTTTCTTGGCAGATACAACAATGTGCGCCGCCGATGAACTCTTTTTCAAGGGACAGATTCTGCCTCTGCGTCTCTCCGTCAGCTCCGACAGCGGCTTACCCAAGCCGAACCCGGCACAGCGGTTGTCTGTGTCGGGTTCCGAGTCCATGGACCGACATGTTCCATGTTACATGTCAGGTTTCAAAAGCGTTAGCCACGGCAGAAGCAGTAGCTGCAGCAGTACTAGAATTAGTCCCAACTCGTCGAGAAGCAACAGCAACAGTAGCAGCTCCACCGCCACAACAAACACTAGCATTGCGAATTCGAAGCCAAGAGTAGTACCTGTCCGAAACCAGTTTTACACGCAACCGAGCCCGAAACCTCAGATTCATATTTCAAATGGGGGACGGCTAGAAAAAGTAGGCAGCCGACCAAGCAAGAAATCGTCGTCGATATGGGACTTTTTCCGGTTGGGATTGGTACGAACACCTGAACAGAACCTTAATAAGGTACTTCGTAGTAACAGTGCTCGTGTTAATAGCACAAGAATTAGTGTCAGTCGCAATAGCAGCGTTAATAGCAACAATAGTACTTCTTTTAGCACCACCAACAACAAGACTACTAGTACGGTTGCCAATGGTACTATTAGTGACGGTGAAAAGAACAATGTCACTAATACTACTGCAGCATTGAACTCGGAGAAGAGTCCACAAAGATTTTTCAGCGGGTGTAAGTGCTCGTTCGAAGCGGTGGCATCCAATGCTGTCGTCCAGAAAAGTAGCTTGGCTATCTTTAGCGAAGCTACGCATGAGAAGGAAGCCGATAAAGTAGCGGCCGACTTGAAGATGAAGAAGAAGAAGAAGAAGAACGGTAGTAAGCAAAAGCAGCTAAAGCAAGACATGTCGCATCACAGAACGTATGAATGGGTAAAGGGGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

365

Amino Acids

39.62

Weight (kDa)

9.74

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67350
fragaria_vesca FvH4_1g17130
malus_domestica MD02G1181700.v1.1 MD15G1292600.v1.1
prunus_persica Prupe.6G224800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107301
rosa_laevigata RLG00000017569
rosa_multiflora Rmu_sc0006416.1_g000002
rosa_roxburghii Rroxscaffold_2G00136450
rosa_rugosa Rorug02G0141700
rosa_samantha Rh2AG192600 Rh2BG204500 Rh2CG197800 Rh2DG199800
rosa_wichuraiana Rw2G015240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 168
AciI CCGC 8 cut(s) 168, 204, 267, 295, 450, 879, 902, 986
AcoI YGGCCR 1 cut(s) 987
AcsI RAATTY 2 cut(s) 143, 475
AfaI GTAC 8 cut(s) 103, 397, 495, 636, 666, 745, 781, 796
AfiI CCNNNNNNNGG 2 cut(s) 116, 661
AflIII ACRYGT 3 cut(s) 331, 345, 1053
AgsI TTSAA 5 cut(s) 223, 358, 552, 847, 997
AhlI ACTAGT 2 cut(s) 98, 776
AjuI GAANNNNNNNTTGG 4 cut(s) 135, 167, 920, 952
AluBI AGCT 7 cut(s) 174, 258, 387, 444, 936, 956, 1042
AluI AGCT 7 cut(s) 174, 258, 387, 444, 936, 956, 1042
Alw21I GWGCWC 2 cut(s) 685, 893
Alw26I GTCTC 1 cut(s) 251
AlwNI CAGNNNCTG 2 cut(s) 235, 387
AoxI GGCC 1 cut(s) 987
ApeKI GCWGC 8 cut(s) 171, 387, 390, 441, 579, 723, 839, 1039
ApoI RAATTY 2 cut(s) 143, 475
AspLEI GCGC 2 cut(s) 168, 203
AspS9I GGNCC 1 cut(s) 325
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 821
AsuII TTCGAA 2 cut(s) 479, 897
AvaII GGWCC 1 cut(s) 325
BanII GRGCYC 1 cut(s) 530
BauI CACGAG 1 cut(s) 684
Bbv12I GWGCWC 2 cut(s) 685, 893
BbvI GCAGC 8 cut(s) 183, 374, 402, 453, 591, 735, 851, 1051
BceAI ACGGC 2 cut(s) 388, 578
BcgI CGANNNNNNTGC 2 cut(s) 831, 865
BcnI CCSGG 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 251
BcuI ACTAGT 2 cut(s) 98, 776
BfaI CTAG 5 cut(s) 99, 399, 465, 566, 777
BfmI CTRYAG 2 cut(s) 388, 837
BglII AGATCT 2 cut(s) 40, 55
BmcAI AGTACT 3 cut(s) 103, 397, 745
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 1 cut(s) 287
BmsI GCATC 2 cut(s) 917, 1069
Bpu14I TTCGAA 2 cut(s) 479, 897
BpuMI CCSGG 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 321, 370
BsaWI WCCGGW 1 cut(s) 621
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 661
Bse1I ACTGG 1 cut(s) 508
Bse3DI GCAATG 1 cut(s) 468
BseDI CCNNGG 2 cut(s) 321, 370
BseGI GGATG 2 cut(s) 17, 908
BseLI CCNNNNNNNGG 2 cut(s) 116, 661
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 1 cut(s) 551
BseNI ACTGG 1 cut(s) 508
BseX3I CGGCCG 1 cut(s) 987
BseXI GCAGC 8 cut(s) 183, 374, 402, 453, 591, 735, 851, 1051
Bsh1236I CGCG 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 990
BshFI GGCC 1 cut(s) 989
BsiEI CGRYCG 1 cut(s) 990
BsiHKAI GWGCWC 2 cut(s) 685, 893
BsiSI CCGG 2 cut(s) 287, 622
BslFI GGGAC 4 cut(s) 240, 393, 573, 626
BslI CCNNNNNNNGG 2 cut(s) 116, 661
BsmAI GTCTC 1 cut(s) 251
BsmBI CGTCTC 1 cut(s) 251
BsmFI GGGAC 4 cut(s) 240, 393, 573, 626
BsnI GGCC 1 cut(s) 989
Bsp119I TTCGAA 2 cut(s) 479, 897
Bsp1286I GDGCHC 3 cut(s) 530, 685, 893
Bsp143I GATC 3 cut(s) 40, 55, 82
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 8 cut(s) 168, 204, 267, 295, 450, 879, 902, 986
BspANI GGCC 1 cut(s) 989
BspCNI CTCAG 1 cut(s) 550
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 313
BspMAI CTGCAG 2 cut(s) 392, 841
BspQI GCTCTTC 1 cut(s) 163
BspT104I TTCGAA 2 cut(s) 479, 897
BsrDI GCAATG 1 cut(s) 468
BsrI ACTGG 1 cut(s) 508
BssECI CCNNGG 2 cut(s) 321, 370
BssMI GATC 3 cut(s) 40, 55, 82
BssSI CACGAG 1 cut(s) 684
BssT1I CCWWGG 1 cut(s) 321
Bst2BI CACGAG 1 cut(s) 684
Bst4CI ACNGT 5 cut(s) 437, 680, 784, 809, 1025
Bst6I CTCTTC 2 cut(s) 163, 851
BstAPI GCANNNNNTGC 2 cut(s) 387, 914
BstBI TTCGAA 2 cut(s) 479, 897
BstDEI CTNAG 1 cut(s) 537
BstDSI CCRYGG 2 cut(s) 321, 370
BstENI CCTNNNNNAGG 1 cut(s) 659
BstF5I GGATG 2 cut(s) 17, 908
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 2 cut(s) 168, 203
BstKTI GATC 3 cut(s) 43, 58, 85
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 3 cut(s) 40, 55, 82
BstMCI CGRYCG 1 cut(s) 990
BstMWI GCNNNNNNNGC 9 cut(s) 264, 387, 438, 588, 723, 732, 914, 1039, 1045
BstNSI RCATGY 3 cut(s) 335, 349, 1057
BstSCI CCNGG 1 cut(s) 285
BstSFI CTRYAG 2 cut(s) 388, 837
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 8 cut(s) 183, 374, 402, 453, 591, 735, 851, 1051
BstX2I RGATCY 2 cut(s) 40, 55
BstYI RGATCY 2 cut(s) 40, 55
BstZI CGGCCG 1 cut(s) 987
BsuRI GGCC 1 cut(s) 989
BtgI CCRYGG 2 cut(s) 321, 370
BtsCI GGATG 2 cut(s) 17, 908
BtsIMutI CAGTG 1 cut(s) 685
CaiI CAGNNNCTG 2 cut(s) 235, 387
CfoI GCGC 2 cut(s) 168, 203
Cfr13I GGNCC 1 cut(s) 325
CseI GACGC 1 cut(s) 233
Csp6I GTAC 8 cut(s) 102, 396, 494, 635, 665, 744, 780, 795
CviAII CATG 7 cut(s) 163, 322, 332, 339, 346, 962, 1054
CviQI GTAC 8 cut(s) 102, 396, 494, 635, 665, 744, 780, 795
DdeI CTNAG 1 cut(s) 537
DpnI GATC 3 cut(s) 42, 57, 84
DpnII GATC 3 cut(s) 40, 55, 82
EaeI YGGCCR 1 cut(s) 987
EagI CGGCCG 1 cut(s) 987
Eam1104I CTCTTC 2 cut(s) 163, 851
EarI CTCTTC 2 cut(s) 163, 851
EclXI CGGCCG 1 cut(s) 987
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 530
Eco47I GGWCC 1 cut(s) 325
Eco52I CGGCCG 1 cut(s) 987
EcoNI CCTNNNNNAGG 1 cut(s) 659
EcoRI GAATTC 2 cut(s) 143, 475
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 530
ErhI CCWWGG 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 251
FaeI CATG 7 cut(s) 166, 325, 335, 342, 349, 965, 1057
FaqI GGGAC 4 cut(s) 240, 393, 573, 626
FatI CATG 7 cut(s) 162, 321, 331, 338, 345, 961, 1053
FauI CCCGC 1 cut(s) 872
FokI GGATG 2 cut(s) 4, 895
FriOI GRGCYC 1 cut(s) 530
FspBI CTAG 5 cut(s) 99, 399, 465, 566, 777
GlaI GCGC 2 cut(s) 167, 202
HaeIII GGCC 1 cut(s) 989
HapII CCGG 2 cut(s) 287, 622
HgaI GACGC 1 cut(s) 233
HhaI GCGC 2 cut(s) 168, 203
Hin1II CATG 7 cut(s) 166, 325, 335, 342, 349, 965, 1057
Hin6I GCGC 2 cut(s) 166, 201
HinP1I GCGC 2 cut(s) 166, 201
HinfI GANTC 5 cut(s) 11, 232, 317, 541, 859
HpaII CCGG 2 cut(s) 287, 622
HphI GGTGA 1 cut(s) 821
Hpy166II GTNNAC 1 cut(s) 863
Hpy188I TCNGA 7 cut(s) 25, 55, 262, 316, 503, 540, 853
Hpy188III TCNNGA 2 cut(s) 420, 925
Hpy8I GTNNAC 1 cut(s) 863
Hpy99I CGWCG 3 cut(s) 421, 604, 607
HpyAV CCTTC 1 cut(s) 961
HpyCH4III ACNGT 5 cut(s) 437, 680, 784, 809, 1025
HpyCH4IV ACGT 1 cut(s) 1070
HpyCH4V TGCA 2 cut(s) 390, 839
HpyF10VI GCNNNNNNNGC 9 cut(s) 264, 387, 438, 588, 723, 732, 914, 1039, 1045
HpyF3I CTNAG 1 cut(s) 537
HpySE526I ACGT 1 cut(s) 1070
Hsp92II CATG 7 cut(s) 166, 325, 335, 342, 349, 965, 1057
HspAI GCGC 2 cut(s) 166, 201
Kzo9I GATC 3 cut(s) 40, 55, 82
LguI GCTCTTC 1 cut(s) 163
LmnI GCTCC 2 cut(s) 263, 449
LpnPI CCDG 9 cut(s) 93, 123, 300, 336, 510, 521, 635, 657, 938
Lsp1109I GCAGC 8 cut(s) 183, 374, 402, 453, 591, 735, 851, 1051
LweI GCATC 2 cut(s) 917, 1069
MaeI CTAG 5 cut(s) 99, 399, 465, 566, 777
MaeII ACGT 1 cut(s) 1070
MaeIII GTNAC 4 cut(s) 341, 674, 803, 823
MalI GATC 3 cut(s) 42, 57, 84
MboI GATC 3 cut(s) 40, 55, 82
MflI RGATCY 2 cut(s) 40, 55
MhlI GDGCHC 3 cut(s) 530, 685, 893
MluCI AATT 5 cut(s) 67, 143, 402, 475, 702
MlyI GAGTC 2 cut(s) 326, 868
MmeI TCCRAC 2 cut(s) 12, 285
MnlI CCTC 4 cut(s) 28, 31, 249, 546
MseI TTAA 4 cut(s) 657, 690, 729, 1093
MspA1I CMGCKG 3 cut(s) 267, 295, 879
MspI CCGG 2 cut(s) 287, 622
MspR9I CCNGG 1 cut(s) 287
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 9 cut(s) 264, 387, 438, 588, 723, 732, 914, 1039, 1045
NciI CCSGG 1 cut(s) 287
NcoI CCATGG 1 cut(s) 321
NdeII GATC 3 cut(s) 40, 55, 82
NlaIII CATG 7 cut(s) 166, 325, 335, 342, 349, 965, 1057
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 2 cut(s) 803, 823
NspI RCATGY 3 cut(s) 335, 349, 1057
NspV TTCGAA 2 cut(s) 479, 897
PciI ACATGT 3 cut(s) 331, 345, 1053
PciSI GCTCTTC 1 cut(s) 163
PfeI GAWTC 3 cut(s) 11, 232, 541
PleI GAGTC 2 cut(s) 325, 867
PpsI GAGTC 2 cut(s) 325, 867
PscI ACATGT 3 cut(s) 331, 345, 1053
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 1 cut(s) 325
PstI CTGCAG 2 cut(s) 392, 841
PstNI CAGNNNCTG 2 cut(s) 235, 387
PsuI RGATCY 2 cut(s) 40, 55
RsaI GTAC 8 cut(s) 103, 397, 495, 636, 666, 745, 781, 796
RsaNI GTAC 8 cut(s) 102, 396, 494, 635, 665, 744, 780, 795
SapI GCTCTTC 1 cut(s) 163
SaqAI TTAA 4 cut(s) 657, 690, 729, 1093
Sau3AI GATC 3 cut(s) 40, 55, 82
Sau96I GGNCC 1 cut(s) 325
ScaI AGTACT 3 cut(s) 103, 397, 745
SchI GAGTC 2 cut(s) 326, 868
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 3 cut(s) 530, 685, 893
SfaNI GCATC 2 cut(s) 917, 1069
SfcI CTRYAG 2 cut(s) 388, 837
SfuI TTCGAA 2 cut(s) 479, 897
SinI GGWCC 1 cut(s) 325
SpeI ACTAGT 2 cut(s) 98, 776
Sse9I AATT 5 cut(s) 67, 143, 402, 475, 702
SsiI CCGC 8 cut(s) 168, 204, 267, 295, 450, 879, 902, 986
SspMI CTAG 5 cut(s) 99, 399, 465, 566, 777
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 5 cut(s) 437, 680, 784, 809, 1025
TaiI ACGT 1 cut(s) 1073
TaqI TCGA 7 cut(s) 85, 129, 147, 419, 479, 605, 897
TaqII GACCGA 1 cut(s) 342
TasI AATT 5 cut(s) 67, 143, 402, 475, 702
TatI WGTACW 3 cut(s) 101, 395, 743
TauI GCSGC 4 cut(s) 171, 206, 270, 989
TfiI GAWTC 3 cut(s) 11, 232, 541
Tru1I TTAA 4 cut(s) 657, 690, 729, 1093
Tru9I TTAA 4 cut(s) 657, 690, 729, 1093
TscAI CASTG 1 cut(s) 685
TseFI GTSAC 2 cut(s) 803, 823
TseI GCWGC 8 cut(s) 171, 387, 390, 441, 579, 723, 839, 1039
Tsp45I GTSAC 2 cut(s) 803, 823
TspDTI ATGAA 5 cut(s) 61, 225, 533, 1016, 1089
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 1 cut(s) 685
VpaK11BI GGWCC 1 cut(s) 325
XagI CCTNNNNNAGG 1 cut(s) 659
XapI RAATTY 2 cut(s) 143, 475
XceI RCATGY 3 cut(s) 335, 349, 1057
XspI CTAG 5 cut(s) 99, 399, 465, 566, 777
ZrmI AGTACT 3 cut(s) 103, 397, 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.