FvH4_1g17130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016139
Physical Location & Seq
Reverse (-)
9911963 .. 9913069
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17130.t1

Sequence Viewer

Length: 1107 bp
ATGGCAAGAGATTCATCATCATCCTCCGAGCAACTAGAGGATGAAGATGTTTCACTCTCCGATCTTCCCCATTTCATCGAACCAGATCAAAGCCACTCAACTAGTACTAAACCTGATGATAGTGGCAACGTTATCGACGCTGAAGAAGAATTCGACTTTGGCTCATCCATGCGCGGCAGCTCTTTCTTGGCAGATACCAAAATGTGCGCTGCCGATGAACTCTTTTTCAAAGGCCAAATTCTGCCTCTTCGACTCTCTGTCAGCTCCGACAACGGCCTAACCAAGCTGAACTCGGCACAGCGTTTGTCTGTGTCGGGTTCAGAGTCCATGGACCAACACAGTCCATGTTACATGTCAGGTTTCAAAAGCATTAGCGACGGAAGAAGCAGTAGCTGCAGCAGCATTAAAATTAGTCCCAACTCTTCAAGAAGCAACAGCAACAGTAGCAGTTCCACCGCCACAACAAACACTAGCAATTCGAGTGCGAAGCCAAGAGTAGTACCTGTCCGAAACCAATTCTACACACACCCCAGCCCGAAACCCCAGATTCAAGTATCAAATGGGGCACGGCTAGAAAATGTTGGCAGCCGGCGGAGCAAAAAATCGTCGTCGATATGGGACTTTTTCCGATTGGGATTGGTACGAACACCTGAGCAAGACCTTAGTAAGGTACTTCGTAGTAACAGTGCTCGTGTTAATAGCACCAGAATTAGTGTCAGTCGCAATAGCAGCGTTAATAGCAACAACAGTATCACACTTGGCAACAACAACAACACTACTAGTAAGGTTGCCAATGGTACCATTAGTGACGGTGAAAAGAACAATGTCACTAATACTACTGCAGCATTGTTCTCGGAGAAGAAGAGTCGGCAGAATTTTTTCAGCGGTTGCAAGTGCTCATTCGACGCGGTGGCATCCAATGCGGTTGTGCCAAAAAGTCATGTCGATAAGGAAAGCGAAGCTAAACATGAGAAGCAAGCCGATAAAGTAGCAGTCGACTTGAAGATGAAGAAGAAGAAGAGGAAGAAGAACAACGGTAGTAAGCAAAAGCAGCTAAAGCAAGACATGTCGCATCAGAGAACGTATGAATGGCTAAAGGGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

369

Amino Acids

40.21

Weight (kDa)

9.48

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67350
fragaria_vesca FvH4_1g17130
malus_domestica MD02G1181700.v1.1 MD15G1292600.v1.1
prunus_persica Prupe.6G224800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107301
rosa_laevigata RLG00000017569
rosa_multiflora Rmu_sc0006416.1_g000002
rosa_roxburghii Rroxscaffold_2G00136450
rosa_rugosa Rorug02G0141700
rosa_samantha Rh2AG192600 Rh2BG204500 Rh2CG197800 Rh2DG199800
rosa_wichuraiana Rw2G015240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 797
AccB1I GGYRCC 1 cut(s) 797
AccI GTMKAC 1 cut(s) 996
AccII CGCG 2 cut(s) 174, 908
AciI CCGC 6 cut(s) 174, 456, 592, 885, 908, 923
AclI AACGTT 1 cut(s) 129
AcsI RAATTY 3 cut(s) 149, 237, 874
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 5 cut(s) 106, 501, 642, 672, 799
AfiI CCNNNNNNNGG 1 cut(s) 667
AflIII ACRYGT 2 cut(s) 351, 1065
AgsI TTSAA 5 cut(s) 229, 364, 426, 551, 1003
AhdI GACNNNNNGTC 1 cut(s) 257
AhlI ACTAGT 2 cut(s) 101, 779
AjuI GAANNNNNNNTTGG 2 cut(s) 141, 173
AluBI AGCT 6 cut(s) 180, 264, 286, 393, 962, 1054
AluI AGCT 6 cut(s) 180, 264, 286, 393, 962, 1054
Alw21I GWGCWC 2 cut(s) 691, 899
AlwNI CAGNNNCTG 1 cut(s) 393
AoxI GGCC 2 cut(s) 232, 274
ApeKI GCWGC 9 cut(s) 177, 209, 393, 396, 399, 585, 729, 842, 1051
ApoI RAATTY 3 cut(s) 149, 237, 874
Asp700I GAANNNNTTC 1 cut(s) 878
Asp718I GGTACC 1 cut(s) 797
AspLEI GCGC 2 cut(s) 174, 209
AspS9I GGNCC 1 cut(s) 331
AsuHPI GGTGA 1 cut(s) 824
AvaII GGWCC 1 cut(s) 331
BaeGI GKGCMC 1 cut(s) 568
BaeI ACNNNNGTAYC 2 cut(s) 733, 766
BanI GGYRCC 1 cut(s) 797
BauI CACGAG 1 cut(s) 690
Bbv12I GWGCWC 2 cut(s) 691, 899
BbvI GCAGC 9 cut(s) 189, 196, 380, 408, 411, 597, 741, 854, 1063
BceAI ACGGC 2 cut(s) 289, 584
BcgI CGANNNNNNTGC 4 cut(s) 115, 149, 834, 868
BcuI ACTAGT 2 cut(s) 101, 779
BfaI CTAG 5 cut(s) 35, 102, 471, 572, 780
BfmI CTRYAG 2 cut(s) 394, 840
BmcAI AGTACT 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 331
BmeRI GACNNNNNGTC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 799
BmsI GCATC 2 cut(s) 923, 1081
Bpu10I CCTNAGC 1 cut(s) 651
BsaJI CCNNGG 1 cut(s) 327
Bsc4I CCNNNNNNNGG 1 cut(s) 667
Bse118I RCCGGY 1 cut(s) 588
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 4 cut(s) 20, 46, 164, 914
BseLI CCNNNNNNNGG 1 cut(s) 667
BseMII CTCAG 1 cut(s) 642
BseSI GKGCMC 1 cut(s) 568
BseXI GCAGC 9 cut(s) 189, 196, 380, 408, 411, 597, 741, 854, 1063
BseYI CCCAGC 1 cut(s) 530
Bsh1236I CGCG 2 cut(s) 174, 908
BshFI GGCC 2 cut(s) 234, 276
BshNI GGYRCC 1 cut(s) 797
BsiHKAI GWGCWC 2 cut(s) 691, 899
BsiSI CCGG 1 cut(s) 589
BslFI GGGAC 2 cut(s) 399, 632
BslI CCNNNNNNNGG 1 cut(s) 667
BsmFI GGGAC 2 cut(s) 399, 632
BsnI GGCC 2 cut(s) 234, 276
Bsp1286I GDGCHC 3 cut(s) 568, 691, 899
Bsp143I GATC 2 cut(s) 61, 85
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 6 cut(s) 174, 456, 592, 885, 908, 923
BspANI GGCC 2 cut(s) 234, 276
BspCNI CTCAG 1 cut(s) 643
BspFNI CGCG 2 cut(s) 174, 908
BspLI GGNNCC 1 cut(s) 799
BspMAI CTGCAG 2 cut(s) 398, 844
BspT107I GGYRCC 1 cut(s) 797
BsrFI RCCGGY 1 cut(s) 588
BssAI RCCGGY 1 cut(s) 588
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 2 cut(s) 61, 85
BssSI CACGAG 1 cut(s) 690
BssT1I CCWWGG 1 cut(s) 327
Bst2BI CACGAG 1 cut(s) 690
Bst4CI ACNGT 6 cut(s) 341, 443, 686, 749, 812, 1037
Bst6I CTCTTC 4 cut(s) 252, 427, 857, 1013
BstAPI GCANNNNNTGC 2 cut(s) 393, 920
BstC8I GCNNGC 2 cut(s) 590, 978
BstDEI CTNAG 2 cut(s) 651, 662
BstDSI CCRYGG 1 cut(s) 327
BstENI CCTNNNNNAGG 1 cut(s) 665
BstF5I GGATG 4 cut(s) 20, 46, 164, 914
BstFNI CGCG 2 cut(s) 174, 908
BstHHI GCGC 2 cut(s) 174, 209
BstKTI GATC 2 cut(s) 64, 88
BstMBI GATC 2 cut(s) 61, 85
BstNSI RCATGY 2 cut(s) 355, 1069
BstSFI CTRYAG 2 cut(s) 394, 840
BstSLI GKGCMC 1 cut(s) 568
BstUI CGCG 2 cut(s) 174, 908
BstV1I GCAGC 9 cut(s) 189, 196, 380, 408, 411, 597, 741, 854, 1063
BsuRI GGCC 2 cut(s) 234, 276
BtgI CCRYGG 1 cut(s) 327
BtsCI GGATG 4 cut(s) 20, 46, 164, 914
BtsIMutI CAGTG 1 cut(s) 691
Cac8I GCNNGC 2 cut(s) 590, 978
CaiI CAGNNNCTG 1 cut(s) 393
CfoI GCGC 2 cut(s) 174, 209
Cfr10I RCCGGY 1 cut(s) 588
Cfr13I GGNCC 1 cut(s) 331
CseI GACGC 2 cut(s) 146, 914
Csp6I GTAC 5 cut(s) 105, 500, 641, 671, 798
CviAII CATG 7 cut(s) 169, 328, 345, 352, 941, 968, 1066
CviQI GTAC 5 cut(s) 105, 500, 641, 671, 798
DdeI CTNAG 2 cut(s) 651, 662
DpnI GATC 2 cut(s) 63, 87
DpnII GATC 2 cut(s) 61, 85
DriI GACNNNNNGTC 1 cut(s) 257
Eam1104I CTCTTC 4 cut(s) 252, 427, 857, 1013
Eam1105I GACNNNNNGTC 1 cut(s) 257
EarI CTCTTC 4 cut(s) 252, 427, 857, 1013
EciI GGCGGA 1 cut(s) 607
Eco130I CCWWGG 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 162
EcoNI CCTNNNNNAGG 1 cut(s) 665
EcoRI GAATTC 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 7 cut(s) 172, 331, 348, 355, 944, 971, 1069
FaiI YATR 9 cut(s) 170, 329, 346, 353, 616, 942, 969, 1067, 1086
FaqI GGGAC 2 cut(s) 399, 632
FatI CATG 7 cut(s) 168, 327, 344, 351, 940, 967, 1065
FblI GTMKAC 1 cut(s) 996
FokI GGATG 4 cut(s) 7, 53, 151, 901
FspBI CTAG 5 cut(s) 35, 102, 471, 572, 780
GlaI GCGC 2 cut(s) 173, 208
GsaI CCCAGC 1 cut(s) 534
HaeIII GGCC 2 cut(s) 234, 276
HapII CCGG 1 cut(s) 589
HgaI GACGC 2 cut(s) 146, 914
HhaI GCGC 2 cut(s) 174, 209
Hin1II CATG 7 cut(s) 172, 331, 348, 355, 944, 971, 1069
Hin6I GCGC 2 cut(s) 172, 207
HinP1I GCGC 2 cut(s) 172, 207
HincII GTYRAC 1 cut(s) 997
HindII GTYRAC 1 cut(s) 997
HinfI GANTC 5 cut(s) 11, 252, 323, 547, 865
HpaII CCGG 1 cut(s) 589
HphI GGTGA 1 cut(s) 824
Hpy166II GTNNAC 1 cut(s) 997
Hpy188I TCNGA 8 cut(s) 28, 61, 268, 322, 509, 629, 856, 1077
Hpy188III TCNNGA 1 cut(s) 426
Hpy8I GTNNAC 1 cut(s) 997
Hpy99I CGWCG 5 cut(s) 140, 380, 610, 613, 908
HpyCH4III ACNGT 6 cut(s) 341, 443, 686, 749, 812, 1037
HpyCH4IV ACGT 2 cut(s) 129, 1082
HpyCH4V TGCA 3 cut(s) 396, 842, 891
HpyF3I CTNAG 2 cut(s) 651, 662
HpySE526I ACGT 2 cut(s) 129, 1082
Hsp92II CATG 7 cut(s) 172, 331, 348, 355, 944, 971, 1069
HspAI GCGC 2 cut(s) 172, 207
KpnI GGTACC 1 cut(s) 801
KroI GCCGGC 1 cut(s) 588
KroNI GCCGGC 1 cut(s) 590
Kzo9I GATC 2 cut(s) 61, 85
LmnI GCTCC 2 cut(s) 269, 594
LpnPI CCDG 9 cut(s) 96, 126, 342, 516, 544, 557, 602, 663, 718
Lsp1109I GCAGC 9 cut(s) 189, 196, 380, 408, 411, 597, 741, 854, 1063
LweI GCATC 2 cut(s) 923, 1081
MaeI CTAG 5 cut(s) 35, 102, 471, 572, 780
MaeII ACGT 2 cut(s) 129, 1082
MaeIII GTNAC 4 cut(s) 347, 680, 806, 826
MalI GATC 2 cut(s) 63, 87
MboI GATC 2 cut(s) 61, 85
MhlI GDGCHC 3 cut(s) 568, 691, 899
MluCI AATT 7 cut(s) 149, 237, 408, 475, 515, 708, 874
MlyI GAGTC 3 cut(s) 246, 332, 874
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 4 cut(s) 31, 34, 255, 1014
MroNI GCCGGC 1 cut(s) 588
MroXI GAANNNNTTC 1 cut(s) 878
MseI TTAA 3 cut(s) 405, 696, 735
MspA1I CMGCKG 1 cut(s) 885
MspI CCGG 1 cut(s) 589
MvnI CGCG 2 cut(s) 174, 908
NaeI GCCGGC 1 cut(s) 590
NcoI CCATGG 1 cut(s) 327
NdeII GATC 2 cut(s) 61, 85
NgoMIV GCCGGC 1 cut(s) 588
NlaIII CATG 7 cut(s) 172, 331, 348, 355, 944, 971, 1069
NlaIV GGNNCC 1 cut(s) 799
NmeAIII GCCGAG 1 cut(s) 272
NmuCI GTSAC 2 cut(s) 806, 826
NspI RCATGY 2 cut(s) 355, 1069
PciI ACATGT 2 cut(s) 351, 1065
PdiI GCCGGC 1 cut(s) 590
PdmI GAANNNNTTC 1 cut(s) 878
PfeI GAWTC 2 cut(s) 11, 547
PleI GAGTC 3 cut(s) 246, 331, 873
PpsI GAGTC 3 cut(s) 246, 331, 873
PscI ACATGT 2 cut(s) 351, 1065
Psp1406I AACGTT 1 cut(s) 129
PspFI CCCAGC 1 cut(s) 530
PspN4I GGNNCC 1 cut(s) 799
PspPI GGNCC 1 cut(s) 331
PstI CTGCAG 2 cut(s) 398, 844
PstNI CAGNNNCTG 1 cut(s) 393
RsaI GTAC 5 cut(s) 106, 501, 642, 672, 799
RsaNI GTAC 5 cut(s) 105, 500, 641, 671, 798
SalI GTCGAC 1 cut(s) 995
SaqAI TTAA 3 cut(s) 405, 696, 735
Sau3AI GATC 2 cut(s) 61, 85
Sau96I GGNCC 1 cut(s) 331
ScaI AGTACT 1 cut(s) 106
SchI GAGTC 3 cut(s) 246, 332, 874
SduI GDGCHC 3 cut(s) 568, 691, 899
SfaNI GCATC 2 cut(s) 923, 1081
SfcI CTRYAG 2 cut(s) 394, 840
SinI GGWCC 1 cut(s) 331
SpeI ACTAGT 2 cut(s) 101, 779
Sse9I AATT 7 cut(s) 149, 237, 408, 475, 515, 708, 874
SsiI CCGC 6 cut(s) 174, 456, 592, 885, 908, 923
SspMI CTAG 5 cut(s) 35, 102, 471, 572, 780
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 6 cut(s) 341, 443, 686, 749, 812, 1037
TaiI ACGT 2 cut(s) 132, 1085
TaqI TCGA 9 cut(s) 78, 135, 153, 250, 479, 611, 903, 945, 996
TasI AATT 7 cut(s) 149, 237, 408, 475, 515, 708, 874
TatI WGTACW 1 cut(s) 104
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 2 cut(s) 11, 547
Tru1I TTAA 3 cut(s) 405, 696, 735
Tru9I TTAA 3 cut(s) 405, 696, 735
TscAI CASTG 1 cut(s) 691
TseFI GTSAC 2 cut(s) 806, 826
TseI GCWGC 9 cut(s) 177, 209, 393, 396, 399, 585, 729, 842, 1051
Tsp45I GTSAC 2 cut(s) 806, 826
TspDTI ATGAA 5 cut(s) 57, 64, 231, 1022, 1101
TspGWI ACGGA 1 cut(s) 393
TspRI CASTG 1 cut(s) 691
VpaK11BI GGWCC 1 cut(s) 331
XagI CCTNNNNNAGG 1 cut(s) 665
XapI RAATTY 3 cut(s) 149, 237, 874
XceI RCATGY 2 cut(s) 355, 1069
XmiI GTMKAC 1 cut(s) 996
XmnI GAANNNNTTC 1 cut(s) 878
XspI CTAG 5 cut(s) 35, 102, 471, 572, 780
ZrmI AGTACT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.