MD02G1181700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0016139
Physical Location & Seq
Reverse (-)
16358352 .. 16359539
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1181700.v1.1.491

Sequence Viewer

Length: 1188 bp
ATGGCAGCAATTACAAACATTGCCGATGATGAACAAGAAAGAATAGTGATTGATGAAGATTCAGCCTCTGTCTCTGACCAATTCGAGCAAGAAGAAGATGATGATGATGAAGAAGAGGATGTGTCACTCTGTGATCTTCCAGTGAATTTGATCAAACAGGATAAAACCCAACTTTCCCATCCCGAATCTGATACTCACCATGTCGCCACTGAAACCCAAGATCAAGAATTTGATTTCGGTTCGTCAATGCGTCGCGGGTCAAATAATTTGTTGACATACACAAAAATGTGTGCTGCAGATGAAGTGTTCTTCCAAGGCCAAATTCTACCTCTCCGTCCCTCCGTCAGCTCAGACACCTGCTCCAACGGACTAACTAGGCGGTGTCCGTTGAGTGGTGTCGGGCTCAGAAGCAGCAGTTGCAGAAGCAGAATTAGTCACAACTCATCATTCAGCAGCAGCACGAGCTCCACCACCACCACAACAGGCATTACTTCAAAGCCAAGAGGAACAAGACCAATAAACCAATTCTATACAGAGCCAAGTCCCAAACCGCAAATCAAAATTCCAAATTCTCGATTAGAAACGGCGGGCAGCCGGCATCATAAGTCCTCGATGTGGGATTTTTTCAGGTTGGGATTGGTGCGTACTCCGGACATGGAATTGCAGGATTTTAACAAGGTACTTCGTACCAATAGTAGTACTAGTTGTACTCGCGCGAATAACAACGTGAAAATTTCCGTCAGTCGAAATAGCAGCGTTAGTAGCACCAACAGTACAAATTTCGTCTCCAATTACAACAATGCTGCTAGTACTATAAGTGGTTTGAAGTCAGAGAATTCGAAACCGAGAAAGCAGAGTTTTTTTAGCAATGTTCATGGCTGCAAGTGCTCGATCGAAACGCTGGCGTCTAATAACGTGATCATCAAGAGCCGATCGAGTAGCGGTAGGAGTAGTAGTACAGGTCACATCAACGAAGGTGGGAGTGGAAGAGCGGCAGCAGCTGACTTGATTACGCGTGCCGAGTCGAAAGAAAAAGTAGCGATAGAGTTGAAGATGACGATGAAGAATAATAACAAGAAGCAGCAGCAAAGTTGTAAGCAAAAGGAAAAGCAGACCCTTTCACATCACAGAACGTATGAATGGCTAAAGCAGCTCTCGCATGCAAACTCTCCTCCTGTGCATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

396

Amino Acids

43.64

Weight (kDa)

8.31

Isoelectric Point (pI)

59.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67350
fragaria_vesca FvH4_1g17130
malus_domestica MD02G1181700.v1.1 MD15G1292600.v1.1
prunus_persica Prupe.6G224800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107301
rosa_laevigata RLG00000017569
rosa_multiflora Rmu_sc0006416.1_g000002
rosa_roxburghii Rroxscaffold_2G00136450
rosa_rugosa Rorug02G0141700
rosa_samantha Rh2AG192600 Rh2BG204500 Rh2CG197800 Rh2DG199800
rosa_wichuraiana Rw2G015240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 365
Acc36I ACCTGC 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 992
AccII CGCG 4 cut(s) 255, 714, 716, 1015
AccIII TCCGGA 1 cut(s) 649
AciI CCGC 6 cut(s) 255, 379, 551, 587, 942, 992
AcsI RAATTY 8 cut(s) 145, 227, 321, 561, 568, 732, 778, 835
AcyI GRCGYC 1 cut(s) 905
AdeI CACNNNGTG 1 cut(s) 131
AfaI GTAC 8 cut(s) 646, 681, 688, 700, 709, 775, 811, 958
AfiI CCNNNNNNNGG 2 cut(s) 392, 615
AflIII ACRYGT 1 cut(s) 1013
AgsI TTSAA 3 cut(s) 495, 826, 1051
AhlI ACTAGT 1 cut(s) 701
AjuI GAANNNNNNNTTGG 2 cut(s) 306, 338
AluBI AGCT 4 cut(s) 348, 465, 1001, 1153
AluI AGCT 4 cut(s) 348, 465, 1001, 1153
Alw21I GWGCWC 2 cut(s) 467, 890
Alw26I GTCTC 2 cut(s) 76, 790
AlwNI CAGNNNCTG 2 cut(s) 68, 1001
Aor13HI TCCGGA 1 cut(s) 649
AoxI GGCC 1 cut(s) 316
ApoI RAATTY 8 cut(s) 145, 227, 321, 561, 568, 732, 778, 835
AspLEI GCGC 1 cut(s) 716
AsuHPI GGTGA 1 cut(s) 188
AsuII TTCGAA 1 cut(s) 839
BanII GRGCYC 2 cut(s) 405, 467
BauI CACGAG 1 cut(s) 460
Bbv12I GWGCWC 2 cut(s) 467, 890
BccI CCATC 1 cut(s) 186
BceAI ACGGC 1 cut(s) 600
BclI TGATCA 2 cut(s) 150, 918
BcoDI GTCTC 2 cut(s) 76, 790
BcuI ACTAGT 1 cut(s) 701
BfaI CTAG 3 cut(s) 375, 702, 807
BfmI CTRYAG 1 cut(s) 294
BfuAI ACCTGC 1 cut(s) 365
BmcAI AGTACT 2 cut(s) 700, 811
BmsI GCATC 1 cut(s) 607
Bpu14I TTCGAA 1 cut(s) 839
BsaHI GRCGYC 1 cut(s) 905
BsaJI CCNNGG 1 cut(s) 313
BsaWI WCCGGW 1 cut(s) 649
BsaXI ACNNNNNCTCC 4 cut(s) 344, 374, 940, 970
Bsc4I CCNNNNNNNGG 2 cut(s) 392, 615
Bse118I RCCGGY 1 cut(s) 594
Bse1I ACTGG 1 cut(s) 140
Bse3DI GCAATG 2 cut(s) 18, 874
BseAI TCCGGA 1 cut(s) 649
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 2 cut(s) 124, 178
BseLI CCNNNNNNNGG 2 cut(s) 392, 615
BseMI GCAATG 2 cut(s) 18, 874
BseMII CTCAG 2 cut(s) 363, 418
BseNI ACTGG 1 cut(s) 140
BseRI GAGGAG 1 cut(s) 1161
Bsh1236I CGCG 4 cut(s) 255, 714, 716, 1015
Bsh1285I CGRYCG 2 cut(s) 894, 935
BshFI GGCC 1 cut(s) 318
BsiEI CGRYCG 2 cut(s) 894, 935
BsiHKAI GWGCWC 2 cut(s) 467, 890
BsiSI CCGG 2 cut(s) 595, 650
BslFI GGGAC 2 cut(s) 321, 528
BslI CCNNNNNNNGG 2 cut(s) 392, 615
BsmAI GTCTC 2 cut(s) 76, 790
BsmBI CGTCTC 1 cut(s) 790
BsmFI GGGAC 2 cut(s) 321, 528
BsnI GGCC 1 cut(s) 318
Bsp119I TTCGAA 1 cut(s) 839
Bsp1286I GDGCHC 3 cut(s) 405, 467, 890
Bsp13I TCCGGA 1 cut(s) 649
Bsp143I GATC 6 cut(s) 133, 150, 220, 891, 918, 932
BspACI CCGC 6 cut(s) 255, 379, 551, 587, 942, 992
BspANI GGCC 1 cut(s) 318
BspCNI CTCAG 2 cut(s) 362, 417
BspEI TCCGGA 1 cut(s) 649
BspFNI CGCG 4 cut(s) 255, 714, 716, 1015
BspMAI CTGCAG 1 cut(s) 298
BspMI ACCTGC 1 cut(s) 365
BspQI GCTCTTC 1 cut(s) 982
BspT104I TTCGAA 1 cut(s) 839
BsrBI CCGCTC 1 cut(s) 992
BsrDI GCAATG 2 cut(s) 18, 874
BsrFI RCCGGY 1 cut(s) 594
BsrI ACTGG 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 594
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 6 cut(s) 133, 150, 220, 891, 918, 932
BssNI GRCGYC 1 cut(s) 905
BssSI CACGAG 1 cut(s) 460
BssT1I CCWWGG 1 cut(s) 313
Bst2BI CACGAG 1 cut(s) 460
Bst4CI ACNGT 1 cut(s) 773
Bst6I CTCTTC 2 cut(s) 108, 982
BstACI GRCGYC 1 cut(s) 905
BstAPI GCANNNNNTGC 1 cut(s) 417
BstBI TTCGAA 1 cut(s) 839
BstC8I GCNNGC 5 cut(s) 589, 596, 903, 1017, 1161
BstDEI CTNAG 2 cut(s) 349, 404
BstF5I GGATG 2 cut(s) 124, 178
BstFNI CGCG 4 cut(s) 255, 714, 716, 1015
BstHHI GCGC 1 cut(s) 716
BstKTI GATC 6 cut(s) 136, 153, 223, 894, 921, 935
BstMAI GTCTC 2 cut(s) 76, 790
BstMBI GATC 6 cut(s) 133, 150, 220, 891, 918, 932
BstMCI CGRYCG 2 cut(s) 894, 935
BstMWI GCNNNNNNNGC 7 cut(s) 417, 462, 762, 885, 998, 1150, 1156
BstNSI RCATGY 2 cut(s) 1163, 1184
BstSFI CTRYAG 1 cut(s) 294
BstUI CGCG 4 cut(s) 255, 714, 716, 1015
BsuRI GGCC 1 cut(s) 318
BtsCI GGATG 2 cut(s) 124, 178
BtsIMutI CAGTG 2 cut(s) 147, 207
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 5 cut(s) 589, 596, 903, 1017, 1161
CaiI CAGNNNCTG 2 cut(s) 68, 1001
CfoI GCGC 1 cut(s) 716
Cfr10I RCCGGY 1 cut(s) 594
CseI GACGC 2 cut(s) 239, 894
Csp6I GTAC 8 cut(s) 645, 680, 687, 699, 708, 774, 810, 957
CspCI CAANNNNNGTGG 2 cut(s) 958, 993
CviAII CATG 5 cut(s) 200, 655, 875, 1160, 1181
CviQI GTAC 8 cut(s) 645, 680, 687, 699, 708, 774, 810, 957
DdeI CTNAG 2 cut(s) 349, 404
DpnI GATC 6 cut(s) 135, 152, 222, 893, 920, 934
DpnII GATC 6 cut(s) 133, 150, 220, 891, 918, 932
DraIII CACNNNGTG 1 cut(s) 131
Eam1104I CTCTTC 2 cut(s) 108, 982
EarI CTCTTC 2 cut(s) 108, 982
Ecl136II GAGCTC 1 cut(s) 465
Eco130I CCWWGG 1 cut(s) 313
Eco24I GRGCYC 2 cut(s) 405, 467
Eco53kI GAGCTC 1 cut(s) 465
EcoICRI GAGCTC 1 cut(s) 465
EcoRI GAATTC 1 cut(s) 835
EcoT14I CCWWGG 1 cut(s) 313
EcoT38I GRGCYC 2 cut(s) 405, 467
ErhI CCWWGG 1 cut(s) 313
Esp3I CGTCTC 1 cut(s) 790
FaeI CATG 5 cut(s) 203, 658, 878, 1163, 1184
FaqI GGGAC 2 cut(s) 321, 528
FatI CATG 5 cut(s) 199, 654, 874, 1159, 1180
FauI CCCGC 2 cut(s) 248, 580
FbaI TGATCA 2 cut(s) 150, 918
FokI GGATG 2 cut(s) 131, 165
FriOI GRGCYC 2 cut(s) 405, 467
FspBI CTAG 3 cut(s) 375, 702, 807
GlaI GCGC 1 cut(s) 715
HaeIII GGCC 1 cut(s) 318
HapII CCGG 2 cut(s) 595, 650
HgaI GACGC 2 cut(s) 239, 894
HhaI GCGC 1 cut(s) 716
Hin1I GRCGYC 1 cut(s) 905
Hin1II CATG 5 cut(s) 203, 658, 878, 1163, 1184
Hin6I GCGC 1 cut(s) 714
HinP1I GCGC 1 cut(s) 714
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 3 cut(s) 59, 185, 1022
HpaII CCGG 2 cut(s) 595, 650
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 5 cut(s) 76, 190, 352, 407, 832
Hpy188III TCNNGA 5 cut(s) 182, 224, 573, 650, 925
Hpy8I GTNNAC 1 cut(s) 273
Hpy99I CGWCG 1 cut(s) 255
HpyAV CCTTC 1 cut(s) 968
HpyCH4III ACNGT 1 cut(s) 773
HpyCH4IV ACGT 3 cut(s) 726, 915, 1133
HpyCH4V TGCA 6 cut(s) 296, 420, 664, 882, 1163, 1180
HpyF10VI GCNNNNNNNGC 7 cut(s) 417, 462, 762, 885, 998, 1150, 1156
HpyF3I CTNAG 2 cut(s) 349, 404
HpySE526I ACGT 3 cut(s) 726, 915, 1133
Hsp92I GRCGYC 1 cut(s) 905
Hsp92II CATG 5 cut(s) 203, 658, 878, 1163, 1184
HspAI GCGC 1 cut(s) 714
Kpn2I TCCGGA 1 cut(s) 649
KroI GCCGGC 1 cut(s) 594
KroNI GCCGGC 1 cut(s) 596
Ksp22I TGATCA 2 cut(s) 150, 918
Kzo9I GATC 6 cut(s) 133, 150, 220, 891, 918, 932
LguI GCTCTTC 1 cut(s) 982
LmnI GCTCC 2 cut(s) 365, 470
LweI GCATC 1 cut(s) 607
MaeI CTAG 3 cut(s) 375, 702, 807
MaeII ACGT 3 cut(s) 726, 915, 1133
MaeIII GTNAC 3 cut(s) 123, 434, 962
MalI GATC 6 cut(s) 135, 152, 222, 893, 920, 934
MbiI CCGCTC 1 cut(s) 992
MboI GATC 6 cut(s) 133, 150, 220, 891, 918, 932
MhlI GDGCHC 3 cut(s) 405, 467, 890
MluI ACGCGT 1 cut(s) 1013
MlyI GAGTC 1 cut(s) 1031
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 7 cut(s) 76, 109, 339, 349, 497, 619, 1182
MroI TCCGGA 1 cut(s) 649
MroNI GCCGGC 1 cut(s) 594
MseI TTAA 2 cut(s) 672, 1186
MslI CAYNNNNRTG 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 1001
MspI CCGG 2 cut(s) 595, 650
MvnI CGCG 4 cut(s) 255, 714, 716, 1015
MwoI GCNNNNNNNGC 7 cut(s) 417, 462, 762, 885, 998, 1150, 1156
NaeI GCCGGC 1 cut(s) 596
NdeII GATC 6 cut(s) 133, 150, 220, 891, 918, 932
NgoMIV GCCGGC 1 cut(s) 594
NlaIII CATG 5 cut(s) 203, 658, 878, 1163, 1184
NmeAIII GCCGAG 1 cut(s) 1045
NmuCI GTSAC 3 cut(s) 123, 434, 962
NspI RCATGY 2 cut(s) 1163, 1184
NspV TTCGAA 1 cut(s) 839
PaeI GCATGC 1 cut(s) 1163
PaqCI CACCTGC 1 cut(s) 365
PciSI GCTCTTC 1 cut(s) 982
PdiI GCCGGC 1 cut(s) 596
PfeI GAWTC 2 cut(s) 59, 185
Ple19I CGATCG 2 cut(s) 894, 935
PleI GAGTC 1 cut(s) 1030
PpsI GAGTC 1 cut(s) 1030
Psp124BI GAGCTC 1 cut(s) 467
PstI CTGCAG 1 cut(s) 298
PstNI CAGNNNCTG 2 cut(s) 68, 1001
PvuI CGATCG 2 cut(s) 894, 935
PvuII CAGCTG 1 cut(s) 1001
RsaI GTAC 8 cut(s) 646, 681, 688, 700, 709, 775, 811, 958
RsaNI GTAC 8 cut(s) 645, 680, 687, 699, 708, 774, 810, 957
RseI CAYNNNNRTG 1 cut(s) 284
SacI GAGCTC 1 cut(s) 467
SapI GCTCTTC 1 cut(s) 982
SaqAI TTAA 2 cut(s) 672, 1186
Sau3AI GATC 6 cut(s) 133, 150, 220, 891, 918, 932
ScaI AGTACT 2 cut(s) 700, 811
SchI GAGTC 1 cut(s) 1031
SduI GDGCHC 3 cut(s) 405, 467, 890
SfaNI GCATC 1 cut(s) 607
SfcI CTRYAG 1 cut(s) 294
SfuI TTCGAA 1 cut(s) 839
SmiMI CAYNNNNRTG 1 cut(s) 284
SpeI ACTAGT 1 cut(s) 701
SphI GCATGC 1 cut(s) 1163
SsiI CCGC 6 cut(s) 255, 379, 551, 587, 942, 992
SspMI CTAG 3 cut(s) 375, 702, 807
SstI GAGCTC 1 cut(s) 467
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 1 cut(s) 773
TaiI ACGT 3 cut(s) 729, 918, 1136
TaqI TCGA 9 cut(s) 84, 574, 611, 745, 839, 890, 894, 935, 1025
TatI WGTACW 5 cut(s) 698, 707, 773, 809, 956
TauI GCSGC 1 cut(s) 995
TfiI GAWTC 2 cut(s) 59, 185
Tru1I TTAA 2 cut(s) 672, 1186
Tru9I TTAA 2 cut(s) 672, 1186
TscAI CASTG 2 cut(s) 147, 214
TseFI GTSAC 3 cut(s) 123, 434, 962
Tsp45I GTSAC 3 cut(s) 123, 434, 962
TspDTI ATGAA 7 cut(s) 45, 69, 123, 315, 863, 1076, 1152
TspGWI ACGGA 5 cut(s) 323, 331, 375, 381, 727
TspRI CASTG 2 cut(s) 147, 214
XapI RAATTY 8 cut(s) 145, 227, 321, 561, 568, 732, 778, 835
XceI RCATGY 2 cut(s) 1163, 1184
XspI CTAG 3 cut(s) 375, 702, 807
ZrmI AGTACT 2 cut(s) 700, 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.