Rmu_sc0006416.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006416.1
OG0016139
Physical Location & Seq
Forward (+)
7880 .. 8968
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006416.1_g000002.1.cds

Sequence Viewer

Length: 1089 bp
atggcaacagattcatcatcctccgagcaattggaggaagatctatcactatccgatcttccccacaatttcatcaaaccagatcaaaaccactcaactagtactaaacctgatagtggtaaggtcatcgaagccgaagaagaattcgattttggctcttccatgcgcggcagctctttcttggcagatacaacaatgtgcgccgccgatgaactctttttcaagggacagattctgcctctgcgtctctccgtcagctccgacagcggcttaaccaagccgaacccggcacagcggttatctgtgtcgggttccgagtccatggaccgacatgttccatgttacatgtcaggtttcaaaagccttagccacggcagaagcagtagctgcagcagtactagaattagtcccaactcgtcaagaagcaacagcaacagtagcagctccaccaccacaacaaacactagcattgcgaattcgaagccaagagtagtacctgtccgaaaccagttttacacgcagccgagcccgaaacctcagattcatgtttcaaatgggggacggctagaaaaagtaggcagccgaccgagcaagaaatcgtcgtcgatatgggactttttccggttgggattggtacgaacacctgaacagaaccttaataaggtacttcgtagtaacagtgctcgtgttaatagcacaagaattagtgtcagtcgcaatagcagcgttaatagcaacaatagtacttcttttagcaccaccaacaacaagactactagtatggttgccaatggtactattagtgatggtgaaaagaacgtcactaatactactgcagcattgaactcggagaagactccacaaagatttttcagcgggtgtaattgctcgttcgaagcggtggcatccactgctgtcgtcccgaaaagtagcttggctatctttagcgaagctacgcatgagaaggaagccgataaagtaccggccgacctgatgaagaagaagaagaagaagaacggtagtaagcaaaagcagctaaagcaagacatgtcgcatcacagaacgtatgaatggctaaaggggctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

362

Amino Acids

39.41

Weight (kDa)

9.61

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67350
fragaria_vesca FvH4_1g17130
malus_domestica MD02G1181700.v1.1 MD15G1292600.v1.1
prunus_persica Prupe.6G224800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107301
rosa_laevigata RLG00000017569
rosa_multiflora Rmu_sc0006416.1_g000002
rosa_roxburghii Rroxscaffold_2G00136450
rosa_rugosa Rorug02G0141700
rosa_samantha Rh2AG192600 Rh2BG204500 Rh2CG197800 Rh2DG199800
rosa_wichuraiana Rw2G015240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 168
AciI CCGC 6 cut(s) 168, 204, 267, 295, 876, 899
AcoI YGGCCR 1 cut(s) 984
AcsI RAATTY 2 cut(s) 143, 475
AfaI GTAC 8 cut(s) 103, 397, 495, 636, 666, 745, 796, 981
AfiI CCNNNNNNNGG 2 cut(s) 116, 661
AflIII ACRYGT 3 cut(s) 331, 345, 1047
AgsI TTSAA 4 cut(s) 223, 358, 552, 844
AhlI ACTAGT 2 cut(s) 98, 776
AjuI GAANNNNNNNTTGG 4 cut(s) 135, 167, 917, 949
AluBI AGCT 7 cut(s) 174, 258, 387, 444, 933, 953, 1036
AluI AGCT 7 cut(s) 174, 258, 387, 444, 933, 953, 1036
Alw21I GWGCWC 1 cut(s) 685
Alw26I GTCTC 1 cut(s) 251
AlwNI CAGNNNCTG 2 cut(s) 235, 387
AoxI GGCC 1 cut(s) 984
ApeKI GCWGC 9 cut(s) 171, 387, 390, 441, 520, 579, 723, 836, 1033
ApoI RAATTY 2 cut(s) 143, 475
AspLEI GCGC 2 cut(s) 168, 203
AspS9I GGNCC 1 cut(s) 325
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 821
AsuII TTCGAA 2 cut(s) 479, 894
AvaII GGWCC 1 cut(s) 325
BanII GRGCYC 1 cut(s) 530
BauI CACGAG 1 cut(s) 684
BbsI GAAGAC 1 cut(s) 860
Bbv12I GWGCWC 1 cut(s) 685
BbvI GCAGC 9 cut(s) 183, 374, 402, 453, 532, 591, 735, 848, 1045
BccI CCATC 1 cut(s) 800
BceAI ACGGC 2 cut(s) 388, 578
BcgI CGANNNNNNTGC 2 cut(s) 828, 862
BcnI CCSGG 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 251
BcuI ACTAGT 2 cut(s) 98, 776
BfaI CTAG 5 cut(s) 99, 399, 465, 566, 777
BfmI CTRYAG 2 cut(s) 388, 834
BglII AGATCT 1 cut(s) 40
BmcAI AGTACT 3 cut(s) 103, 397, 745
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 1 cut(s) 287
BmsI GCATC 2 cut(s) 914, 1063
BpiI GAAGAC 1 cut(s) 860
Bpu10I CCTNAGC 1 cut(s) 365
Bpu14I TTCGAA 2 cut(s) 479, 894
BpuMI CCSGG 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 321, 370
BsaWI WCCGGW 1 cut(s) 621
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 661
Bse118I RCCGGY 1 cut(s) 982
Bse1I ACTGG 1 cut(s) 508
Bse3DI GCAATG 1 cut(s) 468
BseDI CCNNGG 2 cut(s) 321, 370
BseGI GGATG 2 cut(s) 17, 905
BseLI CCNNNNNNNGG 2 cut(s) 116, 661
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 1 cut(s) 551
BseNI ACTGG 1 cut(s) 508
BseX3I CGGCCG 1 cut(s) 984
BseXI GCAGC 9 cut(s) 183, 374, 402, 453, 532, 591, 735, 848, 1045
Bsh1236I CGCG 1 cut(s) 168
Bsh1285I CGRYCG 2 cut(s) 587, 987
BshFI GGCC 1 cut(s) 986
BsiEI CGRYCG 2 cut(s) 587, 987
BsiHKAI GWGCWC 1 cut(s) 685
BsiSI CCGG 3 cut(s) 287, 622, 983
BslFI GGGAC 5 cut(s) 240, 393, 573, 626, 905
BslI CCNNNNNNNGG 2 cut(s) 116, 661
BsmAI GTCTC 1 cut(s) 251
BsmBI CGTCTC 1 cut(s) 251
BsmFI GGGAC 5 cut(s) 240, 393, 573, 626, 905
BsnI GGCC 1 cut(s) 986
Bsp119I TTCGAA 2 cut(s) 479, 894
Bsp1286I GDGCHC 2 cut(s) 530, 685
Bsp143I GATC 3 cut(s) 40, 55, 82
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 6 cut(s) 168, 204, 267, 295, 876, 899
BspANI GGCC 1 cut(s) 986
BspCNI CTCAG 1 cut(s) 550
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 313
BspMAI CTGCAG 2 cut(s) 392, 838
BspQI GCTCTTC 1 cut(s) 163
BspT104I TTCGAA 2 cut(s) 479, 894
BsrDI GCAATG 1 cut(s) 468
BsrFI RCCGGY 1 cut(s) 982
BsrI ACTGG 1 cut(s) 508
BssAI RCCGGY 1 cut(s) 982
BssECI CCNNGG 2 cut(s) 321, 370
BssMI GATC 3 cut(s) 40, 55, 82
BssSI CACGAG 1 cut(s) 684
BssT1I CCWWGG 1 cut(s) 321
Bst2BI CACGAG 1 cut(s) 684
Bst4CI ACNGT 3 cut(s) 437, 680, 1019
Bst6I CTCTTC 1 cut(s) 163
BstAPI GCANNNNNTGC 2 cut(s) 387, 911
BstBI TTCGAA 2 cut(s) 479, 894
BstDEI CTNAG 2 cut(s) 365, 537
BstDSI CCRYGG 2 cut(s) 321, 370
BstENI CCTNNNNNAGG 1 cut(s) 659
BstF5I GGATG 2 cut(s) 17, 905
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 2 cut(s) 168, 203
BstKTI GATC 3 cut(s) 43, 58, 85
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 3 cut(s) 40, 55, 82
BstMCI CGRYCG 2 cut(s) 587, 987
BstNSI RCATGY 3 cut(s) 335, 349, 1051
BstSCI CCNGG 1 cut(s) 285
BstSFI CTRYAG 2 cut(s) 388, 834
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 9 cut(s) 183, 374, 402, 453, 532, 591, 735, 848, 1045
BstV2I GAAGAC 1 cut(s) 860
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BstZI CGGCCG 1 cut(s) 984
BsuRI GGCC 1 cut(s) 986
BtgI CCRYGG 2 cut(s) 321, 370
BtsCI GGATG 2 cut(s) 17, 905
BtsI GCAGTG 1 cut(s) 909
BtsIMutI CAGTG 2 cut(s) 685, 909
CaiI CAGNNNCTG 2 cut(s) 235, 387
CfoI GCGC 2 cut(s) 168, 203
Cfr10I RCCGGY 1 cut(s) 982
Cfr13I GGNCC 1 cut(s) 325
CseI GACGC 1 cut(s) 233
Csp6I GTAC 8 cut(s) 102, 396, 494, 635, 665, 744, 795, 980
CviAII CATG 8 cut(s) 163, 322, 332, 339, 346, 545, 959, 1048
CviQI GTAC 8 cut(s) 102, 396, 494, 635, 665, 744, 795, 980
DdeI CTNAG 2 cut(s) 365, 537
DpnI GATC 3 cut(s) 42, 57, 84
DpnII GATC 3 cut(s) 40, 55, 82
EaeI YGGCCR 1 cut(s) 984
EagI CGGCCG 1 cut(s) 984
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
EclXI CGGCCG 1 cut(s) 984
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 530
Eco47I GGWCC 1 cut(s) 325
Eco52I CGGCCG 1 cut(s) 984
EcoNI CCTNNNNNAGG 1 cut(s) 659
EcoRI GAATTC 2 cut(s) 143, 475
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 530
ErhI CCWWGG 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 251
FaeI CATG 8 cut(s) 166, 325, 335, 342, 349, 548, 962, 1051
FaqI GGGAC 5 cut(s) 240, 393, 573, 626, 905
FatI CATG 8 cut(s) 162, 321, 331, 338, 345, 544, 958, 1047
FauI CCCGC 1 cut(s) 869
FokI GGATG 2 cut(s) 4, 892
FriOI GRGCYC 1 cut(s) 530
FspBI CTAG 5 cut(s) 99, 399, 465, 566, 777
GlaI GCGC 2 cut(s) 167, 202
HaeIII GGCC 1 cut(s) 986
HapII CCGG 3 cut(s) 287, 622, 983
HgaI GACGC 1 cut(s) 233
HhaI GCGC 2 cut(s) 168, 203
Hin1II CATG 8 cut(s) 166, 325, 335, 342, 349, 548, 962, 1051
Hin6I GCGC 2 cut(s) 166, 201
HinP1I GCGC 2 cut(s) 166, 201
HinfI GANTC 5 cut(s) 11, 232, 317, 541, 856
HpaII CCGG 3 cut(s) 287, 622, 983
HphI GGTGA 1 cut(s) 821
Hpy188I TCNGA 7 cut(s) 25, 55, 262, 316, 503, 540, 850
Hpy188III TCNNGA 2 cut(s) 420, 922
Hpy99I CGWCG 2 cut(s) 604, 607
HpyAV CCTTC 1 cut(s) 958
HpyCH4III ACNGT 3 cut(s) 437, 680, 1019
HpyCH4IV ACGT 2 cut(s) 819, 1064
HpyCH4V TGCA 2 cut(s) 390, 836
HpyF3I CTNAG 2 cut(s) 365, 537
HpySE526I ACGT 2 cut(s) 819, 1064
Hsp92II CATG 8 cut(s) 166, 325, 335, 342, 349, 548, 962, 1051
HspAI GCGC 2 cut(s) 166, 201
Kzo9I GATC 3 cut(s) 40, 55, 82
LguI GCTCTTC 1 cut(s) 163
LmnI GCTCC 2 cut(s) 263, 449
Lsp1109I GCAGC 9 cut(s) 183, 374, 402, 453, 532, 591, 735, 848, 1045
LweI GCATC 2 cut(s) 914, 1063
MaeI CTAG 5 cut(s) 99, 399, 465, 566, 777
MaeII ACGT 2 cut(s) 819, 1064
MaeIII GTNAC 3 cut(s) 341, 674, 820
MalI GATC 3 cut(s) 42, 57, 84
MboI GATC 3 cut(s) 40, 55, 82
MfeI CAATTG 1 cut(s) 29
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 2 cut(s) 530, 685
MluCI AATT 7 cut(s) 29, 67, 143, 402, 475, 702, 883
MlyI GAGTC 2 cut(s) 326, 850
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 4 cut(s) 28, 31, 249, 546
MseI TTAA 5 cut(s) 272, 657, 690, 729, 1087
MspA1I CMGCKG 3 cut(s) 267, 295, 876
MspI CCGG 3 cut(s) 287, 622, 983
MspR9I CCNGG 1 cut(s) 287
MunI CAATTG 1 cut(s) 29
MvnI CGCG 1 cut(s) 168
NciI CCSGG 1 cut(s) 287
NcoI CCATGG 1 cut(s) 321
NdeII GATC 3 cut(s) 40, 55, 82
NlaIII CATG 8 cut(s) 166, 325, 335, 342, 349, 548, 962, 1051
NlaIV GGNNCC 1 cut(s) 313
NmeAIII GCCGAG 1 cut(s) 549
NmuCI GTSAC 1 cut(s) 820
NspI RCATGY 3 cut(s) 335, 349, 1051
NspV TTCGAA 2 cut(s) 479, 894
PciI ACATGT 3 cut(s) 331, 345, 1047
PciSI GCTCTTC 1 cut(s) 163
PfeI GAWTC 3 cut(s) 11, 232, 541
PleI GAGTC 2 cut(s) 325, 850
PpsI GAGTC 2 cut(s) 325, 850
PscI ACATGT 3 cut(s) 331, 345, 1047
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 1 cut(s) 325
PstI CTGCAG 2 cut(s) 392, 838
PstNI CAGNNNCTG 2 cut(s) 235, 387
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 8 cut(s) 103, 397, 495, 636, 666, 745, 796, 981
RsaNI GTAC 8 cut(s) 102, 396, 494, 635, 665, 744, 795, 980
SapI GCTCTTC 1 cut(s) 163
SaqAI TTAA 5 cut(s) 272, 657, 690, 729, 1087
Sau3AI GATC 3 cut(s) 40, 55, 82
Sau96I GGNCC 1 cut(s) 325
ScaI AGTACT 3 cut(s) 103, 397, 745
SchI GAGTC 2 cut(s) 326, 850
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 2 cut(s) 530, 685
SfaNI GCATC 2 cut(s) 914, 1063
SfcI CTRYAG 2 cut(s) 388, 834
SfuI TTCGAA 2 cut(s) 479, 894
SinI GGWCC 1 cut(s) 325
SpeI ACTAGT 2 cut(s) 98, 776
Sse9I AATT 7 cut(s) 29, 67, 143, 402, 475, 702, 883
SsiI CCGC 6 cut(s) 168, 204, 267, 295, 876, 899
SspMI CTAG 5 cut(s) 99, 399, 465, 566, 777
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 3 cut(s) 437, 680, 1019
TaiI ACGT 2 cut(s) 822, 1067
TaqI TCGA 5 cut(s) 129, 147, 479, 605, 894
TaqII GACCGA 2 cut(s) 342, 601
TasI AATT 7 cut(s) 29, 67, 143, 402, 475, 702, 883
TatI WGTACW 3 cut(s) 101, 395, 743
TauI GCSGC 3 cut(s) 171, 206, 270
TfiI GAWTC 3 cut(s) 11, 232, 541
Tru1I TTAA 5 cut(s) 272, 657, 690, 729, 1087
Tru9I TTAA 5 cut(s) 272, 657, 690, 729, 1087
TscAI CASTG 2 cut(s) 685, 916
TseFI GTSAC 1 cut(s) 820
TseI GCWGC 9 cut(s) 171, 387, 390, 441, 520, 579, 723, 836, 1033
Tsp45I GTSAC 1 cut(s) 820
TspDTI ATGAA 5 cut(s) 61, 225, 533, 1010, 1083
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 2 cut(s) 685, 916
VpaK11BI GGWCC 1 cut(s) 325
XagI CCTNNNNNAGG 1 cut(s) 659
XapI RAATTY 2 cut(s) 143, 475
XceI RCATGY 3 cut(s) 335, 349, 1051
XspI CTAG 5 cut(s) 99, 399, 465, 566, 777
ZrmI AGTACT 3 cut(s) 103, 397, 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.