Prupe.6G224800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016139
Physical Location & Seq
Forward (+)
22932809 .. 22934905
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G224800.1

Sequence Viewer

Length: 1200 bp
ATGGCAACAATTGCAGCAATTACAAACATTTCTGCTGCTGCTGAAGACAGAGTACTGGATCAAGATTCAGTCTCTGAGCAACTAGAGGAAGAAGAAGAAGAAGAAGAAGACAATGTGTCACTAAGTGATCTTCCAGTGAATTGGAAGAAACAAGATCAAACCCAATATCCAAACACTAAATCTGAGCCTACCCATGCCAACATTGAAGCCCAAGATGAAGAATTTGATTTTGGTTATTCAATGCGCGGCACCTCTTTTTGGGCTGACACCAAAATGTGTGCTGCCGATGAGGTGTTCTTCCAAGGCCAAATTCTCCCTCTCCGCCTCTCAGTCAGCTCCGACGCCGGATTTGCCGGCTTAACCAGACGGTCTCCGGCGAGCAGCGTCGGGTTCAGAAGCAATAGCTGCAGAAGCAGAATCAGTCCCAATTCATCATTTAGCAGCAACAGCAGCTCCACCACCACCACCACCACCACCACCACTACCACAACAGCAACAAGAGGCATTGCTTCAAGCTCAAAGCAGAGAAGCCCAAGAAGACCCAGAAACCAATTCTACACAGAGCCCAGTCCAAAACCCCAAATCAAAATTCCAAATCCAAGACTGGAAAAAGCTGGCAGCCGACGCCATAATTCTTCGATGTGGGATTTTTTCAGGCTGGGTTTGGTCCGTACGCCTGACATTGAATTGCAGGACATTAACAAGGCACTTCGAAGTAATAGCAGCGCCAATAAAAGTTCCGTCAGTCGAAATAGCAGCGTTAGCAGCACCCACAGCACTAATTTCATCGCAAATTACTACAACGCCACTAGCGCCGGCGGTGTTTTGAAGTCCGAGGACACGAAACAGAACAAACAGAGCAAGCAGAGAAAACAGAGGTTTTTTGATAGCATTCATGGCTGCAAGTGCTCGTTCGAAACTGTGGCGTCTGATAACCTGATCGTCAAGAGCAAATCATCAAGCAGTGGGAGAAGCAGCTCGAGTCACATCAATGAAAGCAGAACAGAAACAGAATACTCGGCTGCGCATGCAATGCTGAAAGAAAAAGTAGAGGTGGAGTTGAAGATGATGAAGAATAATAAGCAGAAGCAGAAGCAAAAGCAAAAGCAAAAGCAGGCCATGTCGCATCACAGAACGTATGAATGGCTAAAGCAGCTGTCGCATGCAAATTCTCCTCCTCCTCTTCCTGTGCATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

400

Amino Acids

44.53

Weight (kDa)

9.32

Isoelectric Point (pI)

75.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67350
fragaria_vesca FvH4_1g17130
malus_domestica MD02G1181700.v1.1 MD15G1292600.v1.1
prunus_persica Prupe.6G224800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107301
rosa_laevigata RLG00000017569
rosa_multiflora Rmu_sc0006416.1_g000002
rosa_roxburghii Rroxscaffold_2G00136450
rosa_rugosa Rorug02G0141700
rosa_samantha Rh2AG192600 Rh2BG204500 Rh2CG197800 Rh2DG199800
rosa_wichuraiana Rw2G015240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1026
AccB1I GGYRCC 1 cut(s) 248
AccII CGCG 1 cut(s) 246
AciI CCGC 3 cut(s) 246, 322, 819
AclWI GGATC 1 cut(s) 66
AcsI RAATTY 4 cut(s) 221, 309, 588, 1168
AcuI CTGAAG 1 cut(s) 63
AcyI GRCGYC 3 cut(s) 342, 625, 926
AdeI CACNNNGTG 1 cut(s) 125
AfaI GTAC 2 cut(s) 54, 673
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 6 cut(s) 206, 240, 513, 686, 829, 1063
AhdI GACNNNNNGTC 1 cut(s) 115
AjuI GAANNNNNNNTTGG 6 cut(s) 213, 245, 294, 326, 573, 605
AluBI AGCT 7 cut(s) 336, 405, 453, 516, 614, 978, 1156
AluI AGCT 7 cut(s) 336, 405, 453, 516, 614, 978, 1156
Alw21I GWGCWC 1 cut(s) 911
Alw26I GTCTC 2 cut(s) 76, 375
AlwI GGATC 1 cut(s) 66
AlwNI CAGNNNCTG 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 979
AoxI GGCC 2 cut(s) 304, 1116
ApoI RAATTY 4 cut(s) 221, 309, 588, 1168
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspLEI GCGC 4 cut(s) 246, 728, 815, 1027
AspS9I GGNCC 1 cut(s) 667
AsuII TTCGAA 2 cut(s) 712, 915
AvaI CYCGRG 1 cut(s) 979
AvaII GGWCC 1 cut(s) 667
BanI GGYRCC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 567
BarI GAAGNNNNNNTAC 2 cut(s) 36, 68
BbsI GAAGAC 3 cut(s) 51, 114, 544
Bbv12I GWGCWC 1 cut(s) 911
BcoDI GTCTC 2 cut(s) 76, 375
BfaI CTAG 2 cut(s) 83, 810
BfmI CTRYAG 1 cut(s) 406
BfoI RGCGCY 2 cut(s) 729, 816
BmcAI AGTACT 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 667
BmeRI GACNNNNNGTC 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 979
BmgT120I GGNCC 1 cut(s) 667
BmiI GGNNCC 1 cut(s) 250
BmrI ACTGGG 1 cut(s) 561
BmsI GCATC 1 cut(s) 1135
BmuI ACTGGG 1 cut(s) 561
BpiI GAAGAC 3 cut(s) 51, 114, 544
Bpu14I TTCGAA 2 cut(s) 712, 915
BsaHI GRCGYC 3 cut(s) 342, 625, 926
BsaI GGTCTC 1 cut(s) 375
BsaJI CCNNGG 2 cut(s) 301, 834
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse118I RCCGGY 2 cut(s) 353, 815
Bse1I ACTGG 4 cut(s) 60, 134, 567, 609
Bse3DI GCAATG 2 cut(s) 504, 1038
BseDI CCNNGG 2 cut(s) 301, 834
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMI GCAATG 2 cut(s) 504, 1038
BseMII CTCAG 3 cut(s) 66, 174, 342
BseNI ACTGG 4 cut(s) 60, 134, 567, 609
BseRI GAGGAG 3 cut(s) 1164, 1167, 1170
BseYI CCCAGC 1 cut(s) 658
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 2 cut(s) 306, 1118
BshNI GGYRCC 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 911
BsiHKCI CYCGRG 1 cut(s) 979
BsiSI CCGG 4 cut(s) 345, 354, 374, 816
BsiWI CGTACG 1 cut(s) 671
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 2 cut(s) 76, 375
BsmFI GGGAC 1 cut(s) 408
BsmI GAATGC 1 cut(s) 891
BsnI GGCC 2 cut(s) 306, 1118
Bso31I GGTCTC 1 cut(s) 375
BsoBI CYCGRG 1 cut(s) 979
Bsp119I TTCGAA 2 cut(s) 712, 915
Bsp1286I GDGCHC 2 cut(s) 567, 911
Bsp143I GATC 4 cut(s) 58, 127, 154, 939
BspACI CCGC 3 cut(s) 246, 322, 819
BspANI GGCC 2 cut(s) 306, 1118
BspCNI CTCAG 3 cut(s) 67, 175, 341
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 250
BspMAI CTGCAG 1 cut(s) 410
BspPI GGATC 1 cut(s) 66
BspT104I TTCGAA 2 cut(s) 712, 915
BspT107I GGYRCC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 375
BsrDI GCAATG 2 cut(s) 504, 1038
BsrFI RCCGGY 2 cut(s) 353, 815
BsrI ACTGG 4 cut(s) 60, 134, 567, 609
BssAI RCCGGY 2 cut(s) 353, 815
BssECI CCNNGG 2 cut(s) 301, 834
BssMI GATC 4 cut(s) 58, 127, 154, 939
BssNI GRCGYC 3 cut(s) 342, 625, 926
BssT1I CCWWGG 1 cut(s) 301
Bst4CI ACNGT 2 cut(s) 369, 922
Bst6I CTCTTC 1 cut(s) 1188
BstACI GRCGYC 3 cut(s) 342, 625, 926
BstAPI GCANNNNNTGC 3 cut(s) 11, 405, 1033
BstBI TTCGAA 2 cut(s) 712, 915
BstC8I GCNNGC 8 cut(s) 355, 379, 616, 817, 863, 1029, 1116, 1164
BstDEI CTNAG 4 cut(s) 75, 122, 183, 328
BstFNI CGCG 1 cut(s) 246
BstH2I RGCGCY 2 cut(s) 729, 816
BstHHI GCGC 4 cut(s) 246, 728, 815, 1027
BstKTI GATC 4 cut(s) 61, 130, 157, 942
BstMAI GTCTC 2 cut(s) 76, 375
BstMBI GATC 4 cut(s) 58, 127, 154, 939
BstNSI RCATGY 3 cut(s) 1031, 1166, 1196
BstSFI CTRYAG 1 cut(s) 406
BstUI CGCG 1 cut(s) 246
BstV2I GAAGAC 3 cut(s) 51, 114, 544
BstXI CCANNNNNNTGG 1 cut(s) 141
BsuRI GGCC 2 cut(s) 306, 1118
BtgZI GCGATG 1 cut(s) 772
BtsI GCAGTG 1 cut(s) 970
BtsIMutI CAGTG 2 cut(s) 141, 970
Cac8I GCNNGC 8 cut(s) 355, 379, 616, 817, 863, 1029, 1116, 1164
CaiI CAGNNNCTG 1 cut(s) 74
CfoI GCGC 4 cut(s) 246, 728, 815, 1027
Cfr10I RCCGGY 2 cut(s) 353, 815
Cfr13I GGNCC 1 cut(s) 667
CseI GACGC 4 cut(s) 350, 373, 633, 915
Csp6I GTAC 2 cut(s) 53, 672
CviAII CATG 6 cut(s) 194, 896, 1028, 1120, 1163, 1193
CviQI GTAC 2 cut(s) 53, 672
DdeI CTNAG 4 cut(s) 75, 122, 183, 328
DpnI GATC 4 cut(s) 60, 129, 156, 941
DpnII GATC 4 cut(s) 58, 127, 154, 939
DraIII CACNNNGTG 1 cut(s) 125
DriI GACNNNNNGTC 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 1188
Eam1105I GACNNNNNGTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 1188
EciI GGCGGA 1 cut(s) 311
Eco130I CCWWGG 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 567
Eco31I GGTCTC 1 cut(s) 375
Eco47I GGWCC 1 cut(s) 667
Eco57I CTGAAG 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 979
EcoT14I CCWWGG 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 567
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 6 cut(s) 197, 899, 1031, 1123, 1166, 1196
FaiI YATR 8 cut(s) 195, 630, 897, 1029, 1121, 1140, 1164, 1194
FaqI GGGAC 1 cut(s) 408
FatI CATG 6 cut(s) 193, 895, 1027, 1119, 1162, 1192
FriOI GRGCYC 1 cut(s) 567
FspBI CTAG 2 cut(s) 83, 810
FspI TGCGCA 1 cut(s) 1026
GlaI GCGC 4 cut(s) 245, 727, 814, 1026
GsaI CCCAGC 1 cut(s) 662
HaeII RGCGCY 2 cut(s) 729, 816
HaeIII GGCC 2 cut(s) 306, 1118
HapII CCGG 4 cut(s) 345, 354, 374, 816
HgaI GACGC 4 cut(s) 350, 373, 633, 915
HhaI GCGC 4 cut(s) 246, 728, 815, 1027
Hin1I GRCGYC 3 cut(s) 342, 625, 926
Hin1II CATG 6 cut(s) 197, 899, 1031, 1123, 1166, 1196
Hin6I GCGC 4 cut(s) 244, 726, 813, 1025
HinP1I GCGC 4 cut(s) 244, 726, 813, 1025
HinfI GANTC 3 cut(s) 65, 417, 982
HpaII CCGG 4 cut(s) 345, 354, 374, 816
Hpy188I TCNGA 6 cut(s) 76, 184, 340, 395, 835, 931
Hpy188III TCNNGA 2 cut(s) 62, 946
Hpy99I CGWCG 3 cut(s) 344, 389, 627
HpyCH4III ACNGT 2 cut(s) 369, 922
HpyCH4IV ACGT 1 cut(s) 1136
HpyCH4V TGCA 7 cut(s) 14, 408, 691, 903, 1031, 1166, 1192
HpyF3I CTNAG 4 cut(s) 75, 122, 183, 328
HpySE526I ACGT 1 cut(s) 1136
Hsp92I GRCGYC 3 cut(s) 342, 625, 926
Hsp92II CATG 6 cut(s) 197, 899, 1031, 1123, 1166, 1196
HspAI GCGC 4 cut(s) 244, 726, 813, 1025
KroI GCCGGC 2 cut(s) 353, 815
KroNI GCCGGC 2 cut(s) 355, 817
Kzo9I GATC 4 cut(s) 58, 127, 154, 939
LmnI GCTCC 2 cut(s) 341, 458
LweI GCATC 1 cut(s) 1135
MaeI CTAG 2 cut(s) 83, 810
MaeII ACGT 1 cut(s) 1136
MaeIII GTNAC 2 cut(s) 117, 983
MalI GATC 4 cut(s) 60, 129, 156, 941
MboI GATC 4 cut(s) 58, 127, 154, 939
MfeI CAATTG 1 cut(s) 9
MhlI GDGCHC 2 cut(s) 567, 911
MlyI GAGTC 1 cut(s) 991
MmeI TCCRAC 1 cut(s) 363
MreI CGCCGGCG 1 cut(s) 815
MroNI GCCGGC 2 cut(s) 353, 815
MseI TTAA 3 cut(s) 359, 699, 1198
MslI CAYNNNNRTG 2 cut(s) 272, 990
MspA1I CMGCKG 1 cut(s) 1156
MspI CCGG 4 cut(s) 345, 354, 374, 816
MunI CAATTG 1 cut(s) 9
Mva1269I GAATGC 1 cut(s) 891
MvnI CGCG 1 cut(s) 246
NaeI GCCGGC 2 cut(s) 355, 817
NdeII GATC 4 cut(s) 58, 127, 154, 939
NgoMIV GCCGGC 2 cut(s) 353, 815
NlaIII CATG 6 cut(s) 197, 899, 1031, 1123, 1166, 1196
NlaIV GGNNCC 1 cut(s) 250
NmeAIII GCCGAG 1 cut(s) 998
NmuCI GTSAC 2 cut(s) 117, 983
NsbI TGCGCA 1 cut(s) 1026
NspI RCATGY 3 cut(s) 1031, 1166, 1196
NspV TTCGAA 2 cut(s) 712, 915
PaeI GCATGC 2 cut(s) 1031, 1166
PaeR7I CTCGAG 1 cut(s) 979
PctI GAATGC 1 cut(s) 891
PdiI GCCGGC 2 cut(s) 355, 817
PfeI GAWTC 2 cut(s) 65, 417
Pfl23II CGTACG 1 cut(s) 671
PleI GAGTC 1 cut(s) 990
PpsI GAGTC 1 cut(s) 990
PspFI CCCAGC 1 cut(s) 658
PspLI CGTACG 1 cut(s) 671
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 1 cut(s) 667
PspXI VCTCGAGB 1 cut(s) 979
PstI CTGCAG 1 cut(s) 410
PstNI CAGNNNCTG 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 1156
RsaI GTAC 2 cut(s) 54, 673
RsaNI GTAC 2 cut(s) 53, 672
RseI CAYNNNNRTG 2 cut(s) 272, 990
SaqAI TTAA 3 cut(s) 359, 699, 1198
Sau3AI GATC 4 cut(s) 58, 127, 154, 939
Sau96I GGNCC 1 cut(s) 667
ScaI AGTACT 1 cut(s) 54
SchI GAGTC 1 cut(s) 991
SduI GDGCHC 2 cut(s) 567, 911
SfaNI GCATC 1 cut(s) 1135
SfcI CTRYAG 1 cut(s) 406
Sfr274I CTCGAG 1 cut(s) 979
SfuI TTCGAA 2 cut(s) 712, 915
SgrAI CRCCGGYG 1 cut(s) 815
SinI GGWCC 1 cut(s) 667
SlaI CTCGAG 1 cut(s) 979
SmiMI CAYNNNNRTG 2 cut(s) 272, 990
SmlI CTYRAG 1 cut(s) 979
SmoI CTYRAG 1 cut(s) 979
SphI GCATGC 2 cut(s) 1031, 1166
SsiI CCGC 3 cut(s) 246, 322, 819
SspMI CTAG 2 cut(s) 83, 810
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 2 cut(s) 369, 922
TaiI ACGT 1 cut(s) 1139
TaqI TCGA 5 cut(s) 638, 712, 748, 915, 980
TatI WGTACW 1 cut(s) 52
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 2 cut(s) 65, 417
Tru1I TTAA 3 cut(s) 359, 699, 1198
Tru9I TTAA 3 cut(s) 359, 699, 1198
TscAI CASTG 2 cut(s) 141, 970
TseFI GTSAC 2 cut(s) 117, 983
Tsp45I GTSAC 2 cut(s) 117, 983
TspDTI ATGAA 7 cut(s) 231, 420, 775, 884, 1008, 1085, 1155
TspGWI ACGGA 2 cut(s) 659, 730
TspRI CASTG 2 cut(s) 141, 970
VpaK11BI GGWCC 1 cut(s) 667
XapI RAATTY 4 cut(s) 221, 309, 588, 1168
XceI RCATGY 3 cut(s) 1031, 1166, 1196
XhoI CTCGAG 1 cut(s) 979
XspI CTAG 2 cut(s) 83, 810
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.