Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019186

Physical Location & Seq

Genomic Coordinates Forward (+)

114461 .. 115447

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG01040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGATTTTTTCAATTTTAGAGCATATATTAACTCATATATCTTTTTCGGTCGTTTCAATTGTGCTGACAATTTATTTTTTAACTTTATTAGTTAATTTAGATGAAATCATAGGATTTTTTGATTCATCAGATAAAGGAATCATAATTACGTTTTTTGGTATAACAGGATTATTATTAACTCGTTGGATTTATTCAGGACATTTTCCATTAAGTAATTTATATGAATCATTAATTTTTCTTTCGTGGGCTTTTTCAATTATTCATATGGTTTCCTATTTTAATAAAAAACAACAAAATAAGTTAAACACAATAACTGCGCCAAGTGTTATTTTTATTCAGGGTTTTGCTACTTCAGGTCTTTTAAACAAAATGCCTCAGTCTGCAATATTAGTACCAGCTCTCCAGTCCCAGTGGTTAATGATGCACGTAAGTATGATGATATTAGGCTATGGCGCTCTGTTATGCGGATCATTATTATCAATAGCTCTTCTAGTGATTACATTTCGCAAAGTCGGACCTACTTTTTGGAAAAAGAATATAAAAAAAAATTTTTTATTAAATGAATTATTTTCTTTTGATGTACTTTACTACATAAATGAAAGAAATTCTATTTTACTACAACAAAACATTAATTTTAGTTTTTCTAGAAATTATTATAGGTATCAACTGATTCAACAATTAGATTTTTGGAGTTTTCGTATTATTAGTCTTGGATTTATCTTTTTAACCGTCGGCATTCTTTCAGGAGCTGTCTGGGCTAATGAGACATGGGGTTCATATTGGAACTGGGACCCAAAAGAAACTTGGGCATTTATTACTTGGACTATATTCGCAATTTATTTACATATTAAAACAAATAGGAATGTTAGGGGTATAAATTCTGCAATTGTGGCTTTGATCGGTTTTATTTTAATTTGGATATGCTATTTTGGCGTCAATCTTTTAGGAATAGGTTTACATAGTTATGGTTCATTTACATCGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0008152 GO:0009536 GO:0015886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051181 GO:0051234 GO:0055114 GO:0071702 GO:0071705 GO:1901678

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_C_asm

Protein Analysis

328

Amino Acids

37.73

Weight (kDa)

9.33

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cytochrom_C_asm	PF01578	70 - 320	3.5e-68	Cytochrome C assembly protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG01040
prunus_persica	Prupe.5G061000_v2.0.a1
pyrus_communis	pycom09g13060
rosa_chinensis	RchiOBHm_Chr5g0017241 RchiOBHm_CPg0502821
rosa_multiflora	Rmu_sc0001218.1_g000006
rosa_samantha	Rh2DG279600 Rh7DG273400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	465
AclWI	GGATC	1 cut(s)	475
AcsI	RAATTY	3 cut(s)	547, 604, 877
AcuI	CTGAAG	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	933
AfaI	GTAC	2 cut(s)	393, 582
AgsI	TTSAA	4 cut(s)	12, 57, 255, 674
AluBI	AGCT	3 cut(s)	398, 485, 749
AluI	AGCT	3 cut(s)	398, 485, 749
Alw26I	GTCTC	1 cut(s)	758
AlwI	GGATC	1 cut(s)	475
AlwNI	CAGNNNCTG	1 cut(s)	749
ApoI	RAATTY	3 cut(s)	547, 604, 877
ArsI	GACNNNNNNTTYG	2 cut(s)	507, 539
AseI	ATTAAT	2 cut(s)	230, 630
AspLEI	GCGC	2 cut(s)	319, 455
AspS9I	GGNCC	2 cut(s)	515, 790
AvaII	GGWCC	2 cut(s)	515, 790
BcoDI	GTCTC	1 cut(s)	758
BfaI	CTAG	2 cut(s)	491, 645
BfoI	RGCGCY	1 cut(s)	456
Bme18I	GGWCC	2 cut(s)	515, 790
BmgT120I	GGNCC	2 cut(s)	515, 790
BmiI	GGNNCC	2 cut(s)	791, 792
BmrI	ACTGGG	2 cut(s)	403, 796
BmsI	GCATC	1 cut(s)	411
BmuI	ACTGGG	2 cut(s)	403, 796
BpmI	CTGGAG	1 cut(s)	386
BsaAI	YACGTR	1 cut(s)	427
BsaHI	GRCGYC	1 cut(s)	933
BsaXI	ACNNNNNCTCC	4 cut(s)	384, 414, 682, 712
Bse1I	ACTGG	3 cut(s)	403, 409, 791
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	3 cut(s)	403, 409, 791
Bsh1285I	CGRYCG	1 cut(s)	51
BsiEI	CGRYCG	1 cut(s)	51
BslFI	GGGAC	2 cut(s)	391, 803
BsmAI	GTCTC	1 cut(s)	758
BsmFI	GGGAC	2 cut(s)	391, 803
BsmI	GAATGC	1 cut(s)	735
Bsp143I	GATC	2 cut(s)	467, 897
BspACI	CCGC	1 cut(s)	465
BspCNI	CTCAG	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	791, 792
BspPI	GGATC	1 cut(s)	475
BspQI	GCTCTTC	1 cut(s)	492
BsrI	ACTGG	3 cut(s)	403, 409, 791
BssMI	GATC	2 cut(s)	467, 897
BssNI	GRCGYC	1 cut(s)	933
Bst4CI	ACNGT	1 cut(s)	730
Bst6I	CTCTTC	1 cut(s)	492
BstACI	GRCGYC	1 cut(s)	933
BstBAI	YACGTR	1 cut(s)	427
BstDEI	CTNAG	1 cut(s)	375
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	2 cut(s)	319, 455
BstKTI	GATC	2 cut(s)	470, 900
BstMAI	GTCTC	1 cut(s)	758
BstMBI	GATC	2 cut(s)	467, 897
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	3 cut(s)	755, 890, 930
BtsIMutI	CAGTG	1 cut(s)	416
CaiI	CAGNNNCTG	1 cut(s)	749
CfoI	GCGC	2 cut(s)	319, 455
Cfr13I	GGNCC	2 cut(s)	515, 790
CseI	GACGC	1 cut(s)	922
Csp6I	GTAC	2 cut(s)	392, 581
CviAII	CATG	1 cut(s)	768
CviJI	RGCY	7 cut(s)	248, 398, 447, 485, 749, 758, 893
CviKI_1	RGCY	7 cut(s)	248, 398, 447, 485, 749, 758, 893
CviQI	GTAC	2 cut(s)	392, 581
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	2 cut(s)	469, 899
DpnII	GATC	2 cut(s)	467, 897
DraI	TTTAAA	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Eco47I	GGWCC	2 cut(s)	515, 790
Eco57I	CTGAAG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	790
FaeI	CATG	1 cut(s)	771
FaqI	GGGAC	2 cut(s)	391, 803
FatI	CATG	1 cut(s)	767
FauNDI	CATATG	1 cut(s)	264
FspBI	CTAG	2 cut(s)	491, 645
GlaI	GCGC	2 cut(s)	318, 454
GsuI	CTGGAG	1 cut(s)	386
HaeII	RGCGCY	1 cut(s)	456
HgaI	GACGC	1 cut(s)	922
HhaI	GCGC	2 cut(s)	319, 455
Hin1I	GRCGYC	1 cut(s)	933
Hin1II	CATG	1 cut(s)	771
Hin6I	GCGC	2 cut(s)	317, 453
HinP1I	GCGC	2 cut(s)	317, 453
HinfI	GANTC	4 cut(s)	122, 138, 224, 670
Hpy166II	GTNNAC	1 cut(s)	956
Hpy188I	TCNGA	2 cut(s)	130, 515
Hpy188III	TCNNGA	3 cut(s)	195, 645, 744
Hpy8I	GTNNAC	1 cut(s)	956
Hpy99I	CGWCG	1 cut(s)	734
HpyCH4III	ACNGT	1 cut(s)	730
HpyCH4IV	ACGT	2 cut(s)	149, 426
HpyCH4V	TGCA	3 cut(s)	383, 424, 884
HpyF10VI	GCNNNNNNNGC	3 cut(s)	755, 890, 930
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	2 cut(s)	149, 426
Hsp92I	GRCGYC	1 cut(s)	933
Hsp92II	CATG	1 cut(s)	771
HspAI	GCGC	2 cut(s)	317, 453
KflI	GGGWCCC	1 cut(s)	790
Kzo9I	GATC	2 cut(s)	467, 897
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	1 cut(s)	746
LweI	GCATC	1 cut(s)	411
MaeI	CTAG	2 cut(s)	491, 645
MaeII	ACGT	2 cut(s)	149, 426
MalI	GATC	2 cut(s)	469, 899
MboI	GATC	2 cut(s)	467, 897
MboII	GAAGA	1 cut(s)	479
MfeI	CAATTG	2 cut(s)	57, 885
MmeI	TCCRAC	2 cut(s)	164, 493
MnlI	CCTC	1 cut(s)	384
MslI	CAYNNNNRTG	1 cut(s)	963
MunI	CAATTG	2 cut(s)	57, 885
Mva1269I	GAATGC	1 cut(s)	735
MwoI	GCNNNNNNNGC	3 cut(s)	755, 890, 930
NdeI	CATATG	1 cut(s)	264
NdeII	GATC	2 cut(s)	467, 897
NlaIII	CATG	1 cut(s)	771
NlaIV	GGNNCC	2 cut(s)	791, 792
PciSI	GCTCTTC	1 cut(s)	492
PctI	GAATGC	1 cut(s)	735
PfeI	GAWTC	4 cut(s)	122, 138, 224, 670
Ppu21I	YACGTR	1 cut(s)	427
PpuMI	RGGWCCY	1 cut(s)	790
PshBI	ATTAAT	2 cut(s)	230, 630
Psp5II	RGGWCCY	1 cut(s)	790
PspN4I	GGNNCC	2 cut(s)	791, 792
PspPI	GGNCC	2 cut(s)	515, 790
PspPPI	RGGWCCY	1 cut(s)	790
PstNI	CAGNNNCTG	1 cut(s)	749
RsaI	GTAC	2 cut(s)	393, 582
RsaNI	GTAC	2 cut(s)	392, 581
RseI	CAYNNNNRTG	1 cut(s)	963
SapI	GCTCTTC	1 cut(s)	492
Sau3AI	GATC	2 cut(s)	467, 897
Sau96I	GGNCC	2 cut(s)	515, 790
SetI	ASST	9 cut(s)	152, 358, 400, 429, 487, 520, 662, 751, 955
SfaNI	GCATC	1 cut(s)	411
SinI	GGWCC	2 cut(s)	515, 790
SmiMI	CAYNNNNRTG	1 cut(s)	963
SsiI	CCGC	1 cut(s)	465
SspI	AATATT	1 cut(s)	387
SspMI	CTAG	2 cut(s)	491, 645
TaaI	ACNGT	1 cut(s)	730
TaiI	ACGT	2 cut(s)	152, 429
TaqI	TCGA	1 cut(s)	980
TaqII	GACCGA	1 cut(s)	37
TatI	WGTACW	1 cut(s)	580
TfiI	GAWTC	4 cut(s)	122, 138, 224, 670
TscAI	CASTG	1 cut(s)	416
TspDTI	ATGAA	8 cut(s)	114, 117, 237, 251, 576, 612, 765, 960
TspRI	CASTG	1 cut(s)	416
VpaK11BI	GGWCC	2 cut(s)	515, 790
VspI	ATTAAT	2 cut(s)	230, 630
XapI	RAATTY	3 cut(s)	547, 604, 877
XbaI	TCTAGA	1 cut(s)	644
XcmI	CCANNNNNNNNNTGG	1 cut(s)	801
XspI	CTAG	2 cut(s)	491, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.