Rh2DG279600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
31666674 .. 31667330
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG279600.1

Sequence Viewer

Length: 486 bp
ATGTGGTGGTTGGGTGGAGGATGGTGGGACGACGGCGGGAGAATTCCGGGCAAGCTGCTGGTAGCTCGTTCGGACCTCAATCCTTTTAATCAAAGAAGAAGGGAAAAAAATTTGAAAAAAACATACACGGGTGCAGGGGCCGGAGTCCTCGAAGTTTACACTTCTCCTGATTCAATCAAAATTGACAACCAACAACTTGAAAGACCAAGGCAACTTGCAGGGGGTTTAAATCCCATGACCCGAATTCAACCGATTCACCATATGTGTAGATTCAATTGCACCCAATTCAGTAAGAGAAAAGAAACTCACGCAAGAGGAATGCCATGCCTTCAGAATGTGATCATTTTGACTACATCAAACCCTCTCTCGCCCTCCTTTCAGAAACCAATCATCTTGGACTGGACAAACTCATTTGTCTCTGCTATCCATCGAACAGATTACAGATTTGGAATCATGTGCTTCCTTCTCGAAGACGAACACCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.55

Weight (kDa)

9.69

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019186)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG01040
prunus_persica Prupe.5G061000_v2.0.a1
pyrus_communis pycom09g13060
rosa_chinensis RchiOBHm_Chr5g0017241 RchiOBHm_CPg0502821
rosa_multiflora Rmu_sc0001218.1_g000006
rosa_samantha Rh2DG279600 Rh7DG273400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 36
AcsI RAATTY 3 cut(s) 42, 109, 243
AcuI CTGAAG 1 cut(s) 314
AgsI TTSAA 5 cut(s) 115, 174, 200, 248, 274
AluBI AGCT 2 cut(s) 55, 65
AluI AGCT 2 cut(s) 55, 65
Alw26I GTCTC 1 cut(s) 421
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 55
ApoI RAATTY 3 cut(s) 42, 109, 243
AspS9I GGNCC 2 cut(s) 73, 138
AsuC2I CCSGG 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 248
AvaII GGWCC 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 477
BbvI GCAGC 1 cut(s) 42
BccI CCATC 2 cut(s) 15, 435
BceAI ACGGC 1 cut(s) 49
BclI TGATCA 1 cut(s) 339
BcnI CCSGG 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 421
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 2 cut(s) 73, 138
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 477
BpuMI CCSGG 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 404
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 404
BseXI GCAGC 1 cut(s) 42
BsgI GTGCAG 1 cut(s) 153
BshFI GGCC 1 cut(s) 140
BsiSI CCGG 2 cut(s) 47, 141
BslFI GGGAC 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 421
BsmFI GGGAC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 324
BsnI GGCC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 339
BspACI CCGC 1 cut(s) 36
BspANI GGCC 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 139
BsrI ACTGG 1 cut(s) 404
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 53
BstF5I GGATG 1 cut(s) 26
BstKTI GATC 1 cut(s) 342
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 477
BsuRI GGCC 1 cut(s) 140
BtsCI GGATG 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 73, 138
CviAII CATG 3 cut(s) 235, 324, 454
CviJI RGCY 3 cut(s) 55, 65, 140
CviKI_1 RGCY 3 cut(s) 55, 65, 140
DpnI GATC 1 cut(s) 341
DpnII GATC 1 cut(s) 339
DraI TTTAAA 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 314
EcoRI GAATTC 2 cut(s) 42, 243
EcoT14I CCWWGG 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 3 cut(s) 238, 327, 457
FaiI YATR 6 cut(s) 124, 236, 261, 263, 325, 455
FaqI GGGAC 1 cut(s) 41
FatI CATG 3 cut(s) 234, 323, 453
FauI CCCGC 1 cut(s) 29
FauNDI CATATG 1 cut(s) 261
FbaI TGATCA 1 cut(s) 339
Fnu4HI GCNGC 1 cut(s) 56
FokI GGATG 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 56
GluI GCNGC 1 cut(s) 56
HaeIII GGCC 1 cut(s) 140
HapII CCGG 2 cut(s) 47, 141
Hin1II CATG 3 cut(s) 238, 327, 457
HinfI GANTC 5 cut(s) 144, 170, 253, 270, 450
HpaII CCGG 2 cut(s) 47, 141
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 3 cut(s) 73, 333, 381
Hpy188III TCNNGA 2 cut(s) 167, 467
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 3 cut(s) 93, 338, 473
HpyCH4V TGCA 3 cut(s) 134, 218, 279
Hsp92II CATG 3 cut(s) 238, 327, 457
Ksp22I TGATCA 1 cut(s) 339
Kzo9I GATC 1 cut(s) 339
LpnPI CCDG 7 cut(s) 44, 60, 120, 154, 180, 204, 385
Lsp1109I GCAGC 1 cut(s) 42
MalI GATC 1 cut(s) 341
MboI GATC 1 cut(s) 339
MboII GAAGA 2 cut(s) 108, 482
MfeI CAATTG 1 cut(s) 274
MluCI AATT 6 cut(s) 42, 109, 180, 243, 274, 284
MlyI GAGTC 1 cut(s) 153
MnlI CCTC 6 cut(s) 11, 86, 158, 308, 372, 382
MseI TTAA 2 cut(s) 87, 227
MspI CCGG 2 cut(s) 47, 141
MspR9I CCNGG 1 cut(s) 48
MunI CAATTG 1 cut(s) 274
Mva1269I GAATGC 1 cut(s) 324
NciI CCSGG 1 cut(s) 48
NdeI CATATG 1 cut(s) 261
NdeII GATC 1 cut(s) 339
NlaIII CATG 3 cut(s) 238, 327, 457
NlaIV GGNNCC 1 cut(s) 139
PctI GAATGC 1 cut(s) 324
PfeI GAWTC 4 cut(s) 170, 253, 270, 450
PkrI GCNGC 1 cut(s) 57
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 2 cut(s) 73, 138
SaqAI TTAA 2 cut(s) 87, 227
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 1 cut(s) 339
Sau96I GGNCC 2 cut(s) 73, 138
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 48
SetI ASST 3 cut(s) 57, 67, 78
SinI GGWCC 1 cut(s) 73
Sse9I AATT 6 cut(s) 42, 109, 180, 243, 274, 284
SsiI CCGC 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 1 cut(s) 206
TaqI TCGA 3 cut(s) 150, 430, 468
TasI AATT 6 cut(s) 42, 109, 180, 243, 274, 284
TfiI GAWTC 4 cut(s) 170, 253, 270, 450
Tru1I TTAA 2 cut(s) 87, 227
Tru9I TTAA 2 cut(s) 87, 227
TseI GCWGC 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 73
XapI RAATTY 3 cut(s) 42, 109, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.