Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001218.1

Orthogroup ID

OG0019186

Physical Location & Seq

Genomic Coordinates Forward (+)

37989 .. 39502

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001218.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggagataaccccaagcaattctgaccctgccggaggcctcgacgtttacacttttctggattctatcaaaattcacaaccaacaacttgaaagaccaaggcaacttgcagcggggtttaaatcccatgacccgaattcaaccgattcaccatatgtgcagattcaattgcacccaattcaaaaccgatcatcttggactggacaaactcatctatctcttctatccatcgaacagaacagatctggaatcatgtgcttccttctcgaagataaacttgtcctcactttgcctaggcgaagacagaggctaggtggaagacggaggtctgcgaaaacccaaacttctgaaaacccaaacctcctcaaaaccttcaacccagtctctgcgacggtcgacggcagcggcacgacgacctcgtctcgttctcgcgacatcactctgtcagtctcgcttttggtggcggagcagaagaaagaaaagaaaaaaataagaaggggtcgggaaagagaggagaaagaagaggatatggatgttaagaaagatagagaagaaaagaagaagaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

21.54

Weight (kDa)

9.86

Isoelectric Point (pI)

58.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG01040
prunus_persica	Prupe.5G061000_v2.0.a1
pyrus_communis	pycom09g13060
rosa_chinensis	RchiOBHm_Chr5g0017241 RchiOBHm_CPg0502821
rosa_multiflora	Rmu_sc0001218.1_g000006
rosa_samantha	Rh2DG279600 Rh7DG273400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	418
AccI	GTMKAC	1 cut(s)	396
AccII	CGCG	1 cut(s)	432
AciI	CCGC	3 cut(s)	113, 405, 464
AcsI	RAATTY	2 cut(s)	72, 136
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	5 cut(s)	92, 141, 167, 182, 376
Alw26I	GTCTC	3 cut(s)	388, 426, 454
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	2 cut(s)	110, 402
ApoI	RAATTY	2 cut(s)	72, 136
AspA2I	CCTAGG	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	141
AvrII	CCTAGG	1 cut(s)	293
BbsI	GAAGAC	2 cut(s)	307, 325
BbvI	GCAGC	2 cut(s)	122, 414
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	1 cut(s)	415
BcoDI	GTCTC	3 cut(s)	388, 426, 454
BfaI	CTAG	2 cut(s)	294, 311
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	3 cut(s)	111, 403, 406
BlnI	CCTAGG	1 cut(s)	293
BlsI	GCNGC	3 cut(s)	112, 404, 407
BmrI	ACTGGG	1 cut(s)	374
BmuI	ACTGGG	1 cut(s)	374
BoxI	GACNNNNGTC	1 cut(s)	325
BpiI	GAAGAC	2 cut(s)	307, 325
BsaJI	CCNNGG	2 cut(s)	98, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	2 cut(s)	205, 380
BseDI	CCNNGG	2 cut(s)	98, 293
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseNI	ACTGG	2 cut(s)	205, 380
BseRI	GAGGAG	2 cut(s)	353, 527
BseXI	GCAGC	2 cut(s)	122, 414
BsgI	GTGCAG	1 cut(s)	179
Bsh1236I	CGCG	1 cut(s)	432
Bsh1285I	CGRYCG	1 cut(s)	396
BshFI	GGCC	1 cut(s)	39
BsiEI	CGRYCG	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	3 cut(s)	388, 426, 454
BsmBI	CGTCTC	1 cut(s)	426
BsnI	GGCC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	188, 242
Bsp68I	TCGCGA	1 cut(s)	432
BspACI	CCGC	3 cut(s)	113, 405, 464
BspANI	GGCC	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	432
BsrI	ACTGG	2 cut(s)	205, 380
BssECI	CCNNGG	2 cut(s)	98, 293
BssMI	GATC	2 cut(s)	188, 242
BssT1I	CCWWGG	2 cut(s)	98, 293
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	2 cut(s)	225, 516
BstENI	CCTNNNNNAGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	538
BstFNI	CGCG	1 cut(s)	432
BstKTI	GATC	2 cut(s)	191, 245
BstMAI	GTCTC	3 cut(s)	388, 426, 454
BstMBI	GATC	2 cut(s)	188, 242
BstMCI	CGRYCG	1 cut(s)	396
BstPAI	GACNNNNGTC	1 cut(s)	325
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	2 cut(s)	122, 414
BstV2I	GAAGAC	2 cut(s)	307, 325
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	538
BtuMI	TCGCGA	1 cut(s)	432
CaiI	CAGNNNCTG	1 cut(s)	386
CviAII	CATG	2 cut(s)	128, 253
CviJI	RGCY	2 cut(s)	39, 310
CviKI_1	RGCY	2 cut(s)	39, 310
DpnI	GATC	2 cut(s)	190, 244
DpnII	GATC	2 cut(s)	188, 242
DraI	TTTAAA	1 cut(s)	121
DrdI	GACNNNNNNGTC	1 cut(s)	418
DseDI	GACNNNNNNGTC	1 cut(s)	418
Eam1104I	CTCTTC	2 cut(s)	225, 516
EarI	CTCTTC	2 cut(s)	225, 516
EciI	GGCGGA	1 cut(s)	479
Eco130I	CCWWGG	2 cut(s)	98, 293
Eco147I	AGGCCT	1 cut(s)	39
EcoNI	CCTNNNNNAGG	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	136
EcoT14I	CCWWGG	2 cut(s)	98, 293
ErhI	CCWWGG	2 cut(s)	98, 293
Esp3I	CGTCTC	1 cut(s)	426
FaeI	CATG	2 cut(s)	131, 256
FaiI	YATR	5 cut(s)	129, 154, 156, 254, 530
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	2 cut(s)	127, 252
FauI	CCCGC	1 cut(s)	106
FauNDI	CATATG	1 cut(s)	154
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	3 cut(s)	111, 403, 406
FokI	GGATG	1 cut(s)	545
Fsp4HI	GCNGC	3 cut(s)	111, 403, 406
FspBI	CTAG	2 cut(s)	294, 311
GluI	GCNGC	3 cut(s)	111, 403, 406
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	2 cut(s)	131, 256
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	4 cut(s)	62, 146, 163, 249
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	141
Hpy166II	GTNNAC	2 cut(s)	49, 397
Hpy188I	TCNGA	2 cut(s)	25, 349
Hpy188III	TCNNGA	5 cut(s)	59, 246, 266, 431, 503
Hpy8I	GTNNAC	2 cut(s)	49, 397
Hpy99I	CGWCG	4 cut(s)	47, 394, 401, 415
HpyAV	CCTTC	3 cut(s)	272, 382, 489
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	3 cut(s)	110, 160, 172
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	131, 256
Kzo9I	GATC	2 cut(s)	188, 242
LmnI	GCTCC	1 cut(s)	466
LpnPI	CCDG	6 cut(s)	42, 44, 46, 186, 231, 393
Lsp1109I	GCAGC	2 cut(s)	122, 414
MaeI	CTAG	2 cut(s)	294, 311
MaeII	ACGT	1 cut(s)	45
MalI	GATC	2 cut(s)	190, 244
MboI	GATC	2 cut(s)	188, 242
MboII	GAAGA	7 cut(s)	212, 281, 312, 330, 484, 533, 563
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	1 cut(s)	242
MluCI	AATT	5 cut(s)	19, 72, 136, 167, 177
MseI	TTAA	2 cut(s)	120, 537
MspA1I	CMGCKG	2 cut(s)	113, 405
MspI	CCGG	1 cut(s)	33
MunI	CAATTG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	432
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	2 cut(s)	188, 242
NlaIII	CATG	2 cut(s)	131, 256
NruI	TCGCGA	1 cut(s)	432
PceI	AGGCCT	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PfeI	GAWTC	4 cut(s)	62, 146, 163, 249
PflFI	GACNNNGTC	1 cut(s)	418
PkrI	GCNGC	3 cut(s)	112, 404, 407
PshAI	GACNNNNGTC	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	242
PsyI	GACNNNGTC	1 cut(s)	418
RruI	TCGCGA	1 cut(s)	432
SalI	GTCGAC	1 cut(s)	395
SaqAI	TTAA	2 cut(s)	120, 537
SatI	GCNGC	3 cut(s)	111, 403, 406
Sau3AI	GATC	2 cut(s)	188, 242
SetI	ASST	6 cut(s)	48, 316, 329, 363, 374, 419
Sse9I	AATT	5 cut(s)	19, 72, 136, 167, 177
SseBI	AGGCCT	1 cut(s)	39
SsiI	CCGC	3 cut(s)	113, 405, 464
SspMI	CTAG	2 cut(s)	294, 311
StuI	AGGCCT	1 cut(s)	39
StyI	CCWWGG	2 cut(s)	98, 293
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	4 cut(s)	42, 231, 267, 396
TasI	AATT	5 cut(s)	19, 72, 136, 167, 177
TauI	GCSGC	1 cut(s)	408
TfiI	GAWTC	4 cut(s)	62, 146, 163, 249
Tru1I	TTAA	2 cut(s)	120, 537
Tru9I	TTAA	2 cut(s)	120, 537
TseI	GCWGC	2 cut(s)	110, 402
TspGWI	ACGGA	1 cut(s)	337
Tth111I	GACNNNGTC	1 cut(s)	418
XagI	CCTNNNNNAGG	1 cut(s)	33
XapI	RAATTY	2 cut(s)	72, 136
XmaJI	CCTAGG	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	396
XspI	CTAG	2 cut(s)	294, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.