pycom09g13060

Cytochrome c biogenesis protein CcsA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0019186
Physical Location & Seq
Forward (+)
11627815 .. 11628333
519 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g13060.1

Sequence Viewer

Length: 519 bp
ATGATATTTTCAACTTTAGAGCATATATTAACTCATATATCATTTTCGATCGTTTCAATTGTAATTACAATTCATTTGATAATTTTATTAGTTGATGAAATCGTAGGACTAGATGATTCATCGAAAAAAGGGATGATAGCTACTTTTTTCTGCATACCAGGATTATTAGTTACTTGTTGGATGTATTTGAGGCATTTACCATTAAGTGGTTTATATGAATCATTAATTTTTCTTTTGTGGAGTTTTTCCATTATTCATATTATTCAATATTTTAAAAAACATAAAAACCATTTAAGCGCAATAACTGCGCCAAGTGCTATTTTTACTCAAGGTTTTGCTACTTCGAGTCTTTTAACTAAAATGCATCAATCTGCTATATTAGTACCCGCTCTCCAATCCCGTTGGTTAATGATGCACGTAAGTATGATGATCTTGAGCTATCCAGCTCTTTTGTGTCGATCATTATTATCACTAGCTCTTCTATTCATTACATTTTTGAAAATTCATAAGGATTTTTAG

Protein Analysis

173

Amino Acids

19.55

Weight (kDa)

9.1

Isoelectric Point (pI)

64.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_C_asm PF01578 68 - 164 1e-19 Cytochrome C assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019186)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG01040
prunus_persica Prupe.5G061000_v2.0.a1
pyrus_communis pycom09g13060
rosa_chinensis RchiOBHm_Chr5g0017241 RchiOBHm_CPg0502821
rosa_multiflora Rmu_sc0001218.1_g000006
rosa_samantha Rh2DG279600 Rh7DG273400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 206
AccBSI CCGCTC 1 cut(s) 389
AciI CCGC 1 cut(s) 387
AcsI RAATTY 1 cut(s) 501
AfaI GTAC 1 cut(s) 384
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 4 cut(s) 12, 57, 266, 499
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 4 cut(s) 140, 438, 446, 476
AluI AGCT 4 cut(s) 140, 438, 446, 476
ApoI RAATTY 1 cut(s) 501
AseI ATTAAT 1 cut(s) 224
AspLEI GCGC 2 cut(s) 299, 310
BciT130I CCWGG 1 cut(s) 159
BfaI CTAG 2 cut(s) 110, 473
Bme1390I CCNGG 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 2 cut(s) 373, 402
BpuEI CTTGAG 2 cut(s) 312, 454
BsaAI YACGTR 1 cut(s) 418
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 1 cut(s) 206
BseBI CCWGG 1 cut(s) 159
BseGI GGATG 2 cut(s) 138, 186
BseLI CCNNNNNNNGG 1 cut(s) 206
Bsh1285I CGRYCG 1 cut(s) 51
BsiEI CGRYCG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 206
Bsp143I GATC 3 cut(s) 48, 429, 458
BspACI CCGC 1 cut(s) 387
BspQI GCTCTTC 1 cut(s) 483
BsrBI CCGCTC 1 cut(s) 389
BssMI GATC 3 cut(s) 48, 429, 458
Bst2UI CCWGG 1 cut(s) 159
Bst6I CTCTTC 1 cut(s) 483
BstAPI GCANNNNNTGC 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 418
BstF5I GGATG 2 cut(s) 138, 186
BstHHI GCGC 2 cut(s) 299, 310
BstKTI GATC 3 cut(s) 51, 432, 461
BstMBI GATC 3 cut(s) 48, 429, 458
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 2 cut(s) 305, 314
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 157
BtsCI GGATG 2 cut(s) 138, 186
CfoI GCGC 2 cut(s) 299, 310
Csp6I GTAC 1 cut(s) 383
CviJI RGCY 4 cut(s) 140, 438, 446, 476
CviKI_1 RGCY 4 cut(s) 140, 438, 446, 476
CviQI GTAC 1 cut(s) 383
DpnI GATC 3 cut(s) 50, 431, 460
DpnII GATC 3 cut(s) 48, 429, 458
DraI TTTAAA 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 366
FauI CCCGC 1 cut(s) 394
FokI GGATG 2 cut(s) 145, 193
FspBI CTAG 2 cut(s) 110, 473
GlaI GCGC 2 cut(s) 298, 309
HhaI GCGC 2 cut(s) 299, 310
Hin6I GCGC 2 cut(s) 297, 308
HinP1I GCGC 2 cut(s) 297, 308
HinfI GANTC 3 cut(s) 116, 218, 346
Hpy188III TCNNGA 1 cut(s) 433
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 3 cut(s) 153, 364, 415
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 314
HpySE526I ACGT 1 cut(s) 417
HspAI GCGC 2 cut(s) 297, 308
Kzo9I GATC 3 cut(s) 48, 429, 458
LguI GCTCTTC 1 cut(s) 483
LpnPI CCDG 3 cut(s) 144, 171, 456
LweI GCATC 2 cut(s) 373, 402
MaeI CTAG 2 cut(s) 110, 473
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 1 cut(s) 169
MalI GATC 3 cut(s) 50, 431, 460
MbiI CCGCTC 1 cut(s) 389
MboI GATC 3 cut(s) 48, 429, 458
MboII GAAGA 1 cut(s) 470
MfeI CAATTG 1 cut(s) 57
MluCI AATT 6 cut(s) 57, 63, 69, 81, 225, 501
MlyI GAGTC 1 cut(s) 355
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 1 cut(s) 183
Mph1103I ATGCAT 1 cut(s) 366
MseI TTAA 7 cut(s) 29, 203, 224, 273, 293, 353, 407
MspR9I CCNGG 1 cut(s) 159
MunI CAATTG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 305, 314
NdeII GATC 3 cut(s) 48, 429, 458
NsiI ATGCAT 1 cut(s) 366
PciSI GCTCTTC 1 cut(s) 483
PfeI GAWTC 2 cut(s) 116, 218
PflMI CCANNNNNTGG 1 cut(s) 206
Ple19I CGATCG 1 cut(s) 51
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
Ppu21I YACGTR 1 cut(s) 418
PshBI ATTAAT 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PvuI CGATCG 1 cut(s) 51
RsaI GTAC 1 cut(s) 384
RsaNI GTAC 1 cut(s) 383
SapI GCTCTTC 1 cut(s) 483
SaqAI TTAA 7 cut(s) 29, 203, 224, 273, 293, 353, 407
Sau3AI GATC 3 cut(s) 48, 429, 458
SchI GAGTC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 159
SetI ASST 6 cut(s) 142, 334, 420, 440, 448, 478
SfaNI GCATC 2 cut(s) 373, 402
SmlI CTYRAG 2 cut(s) 327, 433
SmoI CTYRAG 2 cut(s) 327, 433
Sse9I AATT 6 cut(s) 57, 63, 69, 81, 225, 501
SsiI CCGC 1 cut(s) 387
SspI AATATT 1 cut(s) 269
SspMI CTAG 2 cut(s) 110, 473
StyD4I CCNGG 1 cut(s) 157
TaiI ACGT 1 cut(s) 420
TaqI TCGA 4 cut(s) 47, 122, 344, 457
TasI AATT 6 cut(s) 57, 63, 69, 81, 225, 501
TfiI GAWTC 2 cut(s) 116, 218
Tru1I TTAA 7 cut(s) 29, 203, 224, 273, 293, 353, 407
Tru9I TTAA 7 cut(s) 29, 203, 224, 273, 293, 353, 407
TspDTI ATGAA 7 cut(s) 62, 108, 111, 231, 245, 475, 494
Van91I CCANNNNNTGG 1 cut(s) 206
VspI ATTAAT 1 cut(s) 224
XapI RAATTY 1 cut(s) 501
XspI CTAG 2 cut(s) 110, 473
Zsp2I ATGCAT 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.