Prupe.5G061000_v2.0.a1

Cytochrome c biogenesis protein CcsA

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
6628848 .. 6629393
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G061000.1

Sequence Viewer

Length: 399 bp
ATGATGGTATTGAGCTATGCAGCTCTTTTGTGTGGATCATTATTATCATTAGCTCTTCTAGTCATTACATTTCGAAAATTCAGAAGGATTTTTAGTAAAGGCAATAATTTAGTATTAGTAAATGAGTCATTTTACTTTGGTATTCTTTCGGGAGCAGTATGGGCTAATGAAGCATGGGGATCATATTGGAATTGGGATCCAAAGGAGACTTGGGCATTTATTACTTGGACCGTATTTGCGATTTATTTACATATTAGAACAAATAAAATTTTTGAAAGTATAAATTCTGCAATTGTGGCCTCAATGGGCTTTCTTATAATTTGGATATGCTATTTTGGGGTTAATCTATTAGGAATAGGGTTGCATAGTTATGGTTCATTTACATTAACATCTTATTGA

Protein Analysis

133

Amino Acids

15.04

Weight (kDa)

9.0

Isoelectric Point (pI)

15.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019186)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG01040
prunus_persica Prupe.5G061000_v2.0.a1
pyrus_communis pycom09g13060
rosa_chinensis RchiOBHm_Chr5g0017241 RchiOBHm_CPg0502821
rosa_multiflora Rmu_sc0001218.1_g000006
rosa_samantha Rh2DG279600 Rh7DG273400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 317
AclWI GGATC 4 cut(s) 43, 187, 191, 204
AcsI RAATTY 3 cut(s) 77, 267, 283
AgsI TTSAA 1 cut(s) 275
AluBI AGCT 3 cut(s) 15, 23, 53
AluI AGCT 3 cut(s) 15, 23, 53
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 4 cut(s) 43, 187, 191, 204
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 3 cut(s) 77, 267, 283
AspS9I GGNCC 1 cut(s) 228
AsuII TTCGAA 1 cut(s) 73
AvaII GGWCC 1 cut(s) 228
BamHI GGATCC 1 cut(s) 196
BbvI GCAGC 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme18I GGWCC 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 198
Bpu14I TTCGAA 1 cut(s) 73
BseXI GCAGC 1 cut(s) 32
BshFI GGCC 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 200
BsnI GGCC 1 cut(s) 299
Bsp119I TTCGAA 1 cut(s) 73
Bsp143I GATC 3 cut(s) 35, 179, 196
BspANI GGCC 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 198
BspPI GGATC 4 cut(s) 43, 187, 191, 204
BspQI GCTCTTC 1 cut(s) 60
BspT104I TTCGAA 1 cut(s) 73
BssMI GATC 3 cut(s) 35, 179, 196
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 1 cut(s) 60
BstBI TTCGAA 1 cut(s) 73
BstKTI GATC 3 cut(s) 38, 182, 199
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 3 cut(s) 35, 179, 196
BstMWI GCNNNNNNNGC 3 cut(s) 161, 170, 296
BstV1I GCAGC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 228
CviAII CATG 1 cut(s) 174
CviJI RGCY 6 cut(s) 15, 23, 53, 164, 299, 309
CviKI_1 RGCY 6 cut(s) 15, 23, 53, 164, 299, 309
DpnI GATC 3 cut(s) 37, 181, 198
DpnII GATC 3 cut(s) 35, 179, 196
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 228
FaeI CATG 1 cut(s) 177
FatI CATG 1 cut(s) 173
Fnu4HI GCNGC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 1 cut(s) 59
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 1 cut(s) 299
Hin1II CATG 1 cut(s) 177
HinfI GANTC 1 cut(s) 125
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 150
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 3 cut(s) 20, 290, 364
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 170, 296
Hsp92II CATG 1 cut(s) 177
Kzo9I GATC 3 cut(s) 35, 179, 196
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 152
Lsp1109I GCAGC 1 cut(s) 32
MaeI CTAG 1 cut(s) 59
MalI GATC 3 cut(s) 37, 181, 198
MboI GATC 3 cut(s) 35, 179, 196
MboII GAAGA 1 cut(s) 47
MfeI CAATTG 1 cut(s) 291
MflI RGATCY 1 cut(s) 196
MluCI AATT 7 cut(s) 77, 106, 190, 267, 283, 291, 318
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 1 cut(s) 310
MseI TTAA 2 cut(s) 342, 386
MslI CAYNNNNRTG 1 cut(s) 369
MunI CAATTG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 161, 170, 296
NdeII GATC 3 cut(s) 35, 179, 196
NlaIII CATG 1 cut(s) 177
NlaIV GGNNCC 1 cut(s) 198
NspV TTCGAA 1 cut(s) 73
PciSI GCTCTTC 1 cut(s) 60
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PsiI TTATAA 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 228
PsuI RGATCY 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 369
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 2 cut(s) 342, 386
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 3 cut(s) 35, 179, 196
Sau96I GGNCC 1 cut(s) 228
SchI GAGTC 1 cut(s) 134
SetI ASST 3 cut(s) 17, 25, 55
SfuI TTCGAA 1 cut(s) 73
SgeI CNNG 5 cut(s) 71, 162, 186, 222, 237
SinI GGWCC 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 369
Sse9I AATT 7 cut(s) 77, 106, 190, 267, 283, 291, 318
SspMI CTAG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 73
TasI AATT 7 cut(s) 77, 106, 190, 267, 283, 291, 318
Tru1I TTAA 2 cut(s) 342, 386
Tru9I TTAA 2 cut(s) 342, 386
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 2 cut(s) 183, 366
VpaK11BI GGWCC 1 cut(s) 228
XapI RAATTY 3 cut(s) 77, 267, 283
XcmI CCANNNNNNNNNTGG 1 cut(s) 207
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.