Rh7DG273400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
29426501 .. 29427927
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG273400.1

Sequence Viewer

Length: 288 bp
ATGGAGATAACCCCAAGCAATTCTGACTCTGGCGGAGGCCTCGAAGTTTACACCTTTCTGGATTCAATCAAAATTCACAACCAACAAGTTGAAAGACCAAGGCAACTTGCAGCGGGGTTTAAATTCCATGACCCGAATTCAACCGATTCACCATACGTGCAGATTCAAATGCACCCAATTCGATCATCTTCATCTTCATCAGAACGCCACCCAATCTCTGCTCTTGTTCACCAAACGTGGCCGCCGTGGTCGTTGTTGATAGAGAGACTTTGGAGGGAAGCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.89

Weight (kDa)

6.16

Isoelectric Point (pI)

62.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019186)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG01040
prunus_persica Prupe.5G061000_v2.0.a1
pyrus_communis pycom09g13060
rosa_chinensis RchiOBHm_Chr5g0017241 RchiOBHm_CPg0502821
rosa_multiflora Rmu_sc0001218.1_g000006
rosa_samantha Rh2DG279600 Rh7DG273400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 33, 113, 242
AcoI YGGCCR 1 cut(s) 239
AcsI RAATTY 3 cut(s) 72, 122, 136
AgsI TTSAA 4 cut(s) 66, 92, 141, 167
Alw26I GTCTC 1 cut(s) 259
AoxI GGCC 2 cut(s) 37, 239
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 3 cut(s) 72, 122, 136
AsuHPI GGTGA 2 cut(s) 141, 221
BbvI GCAGC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 229
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BcoDI GTCTC 1 cut(s) 259
BisI GCNGC 2 cut(s) 111, 242
BlsI GCNGC 2 cut(s) 112, 243
BsaAI YACGTR 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 98, 245
BseDI CCNNGG 2 cut(s) 98, 245
BseXI GCAGC 1 cut(s) 122
BsgI GTGCAG 1 cut(s) 179
BshFI GGCC 2 cut(s) 39, 241
BsmAI GTCTC 1 cut(s) 259
BsnI GGCC 2 cut(s) 39, 241
Bsp143I GATC 1 cut(s) 182
BspACI CCGC 3 cut(s) 33, 113, 242
BspANI GGCC 2 cut(s) 39, 241
BssECI CCNNGG 2 cut(s) 98, 245
BssMI GATC 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 98
BstBAI YACGTR 1 cut(s) 157
BstDSI CCRYGG 1 cut(s) 245
BstKTI GATC 1 cut(s) 185
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 122
BsuRI GGCC 2 cut(s) 39, 241
BtgI CCRYGG 1 cut(s) 245
CviAII CATG 1 cut(s) 128
CviJI RGCY 2 cut(s) 39, 241
CviKI_1 RGCY 2 cut(s) 39, 241
DpnI GATC 1 cut(s) 184
DpnII GATC 1 cut(s) 182
DraI TTTAAA 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 239
EciI GGCGGA 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 98
Eco147I AGGCCT 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 1 cut(s) 131
FaiI YATR 3 cut(s) 129, 154, 283
FatI CATG 1 cut(s) 127
FauI CCCGC 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 111, 242
Fsp4HI GCNGC 2 cut(s) 111, 242
GluI GCNGC 2 cut(s) 111, 242
HaeIII GGCC 2 cut(s) 39, 241
Hin1II CATG 1 cut(s) 131
HinfI GANTC 4 cut(s) 26, 62, 146, 163
HphI GGTGA 2 cut(s) 141, 221
Hpy166II GTNNAC 2 cut(s) 49, 229
Hpy188I TCNGA 2 cut(s) 25, 202
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 2 cut(s) 49, 229
HpyCH4IV ACGT 2 cut(s) 156, 236
HpyCH4V TGCA 3 cut(s) 110, 160, 172
HpySE526I ACGT 2 cut(s) 156, 236
Hsp92II CATG 1 cut(s) 131
Kzo9I GATC 1 cut(s) 182
LpnPI CCDG 2 cut(s) 15, 44
Lsp1109I GCAGC 1 cut(s) 122
MaeII ACGT 2 cut(s) 156, 236
MalI GATC 1 cut(s) 184
MboI GATC 1 cut(s) 182
MboII GAAGA 2 cut(s) 180, 186
MluCI AATT 5 cut(s) 19, 72, 122, 136, 177
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 3 cut(s) 29, 50, 267
MseI TTAA 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 113
NdeII GATC 1 cut(s) 182
NlaIII CATG 1 cut(s) 131
PceI AGGCCT 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 242
PfeI GAWTC 3 cut(s) 62, 146, 163
PkrI GCNGC 2 cut(s) 112, 243
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
Ppu21I YACGTR 1 cut(s) 157
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 2 cut(s) 111, 242
Sau3AI GATC 1 cut(s) 182
SchI GAGTC 1 cut(s) 20
SetI ASST 3 cut(s) 56, 159, 239
Sse9I AATT 5 cut(s) 19, 72, 122, 136, 177
SseBI AGGCCT 1 cut(s) 39
SsiI CCGC 3 cut(s) 33, 113, 242
StuI AGGCCT 1 cut(s) 39
StyI CCWWGG 1 cut(s) 98
TaiI ACGT 2 cut(s) 159, 239
TaqI TCGA 2 cut(s) 42, 181
TasI AATT 5 cut(s) 19, 72, 122, 136, 177
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 3 cut(s) 62, 146, 163
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 180, 186
XapI RAATTY 3 cut(s) 72, 122, 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.