RCHIOBHM_CPG0502821

Cytochrome c biogenesis protein CcsA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Pt
OG0019186
Physical Location & Seq
Reverse (-)
152779 .. 153383
605 bp
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UTR
Exon/CDS
Intron
PRQ15743

Sequence Viewer

Length: 453 bp
ATGATATTTTCAACTTTAGAGCGTATATTAACTCATATATCCTTTTCGATCATTTCAATTGTAATTACAATTCATTTGATAACTTTATTTGTCGATGAAATCGTAGGACTATATGATTCATCAGAAAAGGGGATGATAGCTACTTTTTTCTGCATAACAGGATTATTAGTTACTCGTTGGATTTATTTTGGGCATTTACCATTAAGCGATTTATATGAATCATTAATTTTTCTTTCGTGGGGTTTTTCCATTATTCATATGATTCCGTATTTTAAAAAACAAAAAAACCATTTAAGCGCAATAACGGCGCCAAGTGTTATTTTTACCCAGGGTTTCGCTACTTCAGGTCTTTTAACCGAAATGCATCAATCCGCAATATTAGTACCTGCTCTCCAATCCCATTGGTTAATGATGCACGTAAGTATGATGTCATTACATTTCGAAAATTCATAA

Protein Analysis

150

Amino Acids

17.07

Weight (kDa)

6.27

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_C_asm PF01578 68 - 145 1.5e-14 Cytochrome C assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019186)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG01040
prunus_persica Prupe.5G061000_v2.0.a1
pyrus_communis pycom09g13060
rosa_chinensis RchiOBHm_Chr5g0017241 RchiOBHm_CPg0502821
rosa_multiflora Rmu_sc0001218.1_g000006
rosa_samantha Rh2DG279600 Rh7DG273400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 394
AccB1I GGYRCC 1 cut(s) 307
AciI CCGC 1 cut(s) 372
AcsI RAATTY 1 cut(s) 445
AcuI CTGAAG 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 308
AfaI GTAC 1 cut(s) 384
AgsI TTSAA 2 cut(s) 12, 57
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
ApoI RAATTY 1 cut(s) 445
AseI ATTAAT 1 cut(s) 224
AspLEI GCGC 2 cut(s) 299, 310
AsuII TTCGAA 1 cut(s) 441
BanI GGYRCC 1 cut(s) 307
BceAI ACGGC 1 cut(s) 321
BciT130I CCWGG 1 cut(s) 329
BfoI RGCGCY 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 394
Bme1390I CCNGG 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 1 cut(s) 329
BmsI GCATC 2 cut(s) 373, 402
Bpu14I TTCGAA 1 cut(s) 441
BsaAI YACGTR 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 308
BsaJI CCNNGG 2 cut(s) 327, 328
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 2 cut(s) 327, 328
BseGI GGATG 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 307
Bsp119I TTCGAA 1 cut(s) 441
Bsp143I GATC 1 cut(s) 48
BspACI CCGC 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 309
BspMI ACCTGC 1 cut(s) 394
BspT104I TTCGAA 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 327, 328
BssMI GATC 1 cut(s) 48
BssNI GRCGYC 1 cut(s) 308
Bst2UI CCWGG 1 cut(s) 329
BstACI GRCGYC 1 cut(s) 308
BstBAI YACGTR 1 cut(s) 418
BstBI TTCGAA 1 cut(s) 441
BstF5I GGATG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 2 cut(s) 299, 310
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 1 cut(s) 329
BstSCI CCNGG 1 cut(s) 327
BtsCI GGATG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 394
CfoI GCGC 2 cut(s) 299, 310
Csp6I GTAC 1 cut(s) 383
CviJI RGCY 1 cut(s) 140
CviKI_1 RGCY 1 cut(s) 140
CviQI GTAC 1 cut(s) 383
DinI GGCGCC 1 cut(s) 309
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
DraI TTTAAA 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 327
EcoT22I ATGCAT 1 cut(s) 366
EgeI GGCGCC 1 cut(s) 309
EheI GGCGCC 1 cut(s) 309
FauNDI CATATG 1 cut(s) 258
FokI GGATG 1 cut(s) 145
GlaI GCGC 2 cut(s) 298, 309
HaeII RGCGCY 1 cut(s) 311
HhaI GCGC 2 cut(s) 299, 310
Hin1I GRCGYC 1 cut(s) 308
Hin6I GCGC 2 cut(s) 297, 308
HinP1I GCGC 2 cut(s) 297, 308
HinfI GANTC 3 cut(s) 116, 218, 262
Hpy188I TCNGA 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 3 cut(s) 153, 364, 415
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpySE526I ACGT 1 cut(s) 417
Hsp92I GRCGYC 1 cut(s) 308
HspAI GCGC 2 cut(s) 297, 308
KasI GGCGCC 1 cut(s) 307
Kzo9I GATC 1 cut(s) 48
LpnPI CCDG 5 cut(s) 144, 314, 330, 341, 399
LweI GCATC 2 cut(s) 373, 402
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 1 cut(s) 169
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MfeI CAATTG 1 cut(s) 57
MluCI AATT 5 cut(s) 57, 63, 69, 225, 445
Mly113I GGCGCC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 158
Mph1103I ATGCAT 1 cut(s) 366
MseI TTAA 7 cut(s) 29, 203, 224, 273, 293, 353, 407
MspR9I CCNGG 1 cut(s) 329
MunI CAATTG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 329
MwoI GCNNNNNNNGC 1 cut(s) 305
NarI GGCGCC 1 cut(s) 308
NdeI CATATG 1 cut(s) 258
NdeII GATC 1 cut(s) 48
NlaIV GGNNCC 1 cut(s) 309
NsiI ATGCAT 1 cut(s) 366
NspV TTCGAA 1 cut(s) 441
PasI CCCWGGG 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 3 cut(s) 116, 218, 262
PluTI GGCGCC 1 cut(s) 311
Ppu21I YACGTR 1 cut(s) 418
PshBI ATTAAT 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 309
RsaI GTAC 1 cut(s) 384
RsaNI GTAC 1 cut(s) 383
SaqAI TTAA 7 cut(s) 29, 203, 224, 273, 293, 353, 407
Sau3AI GATC 1 cut(s) 48
ScrFI CCNGG 1 cut(s) 329
SetI ASST 4 cut(s) 142, 349, 388, 420
SfaNI GCATC 2 cut(s) 373, 402
SfoI GGCGCC 1 cut(s) 309
SfuI TTCGAA 1 cut(s) 441
SgeI CNNG 9 cut(s) 171, 186, 249, 324, 340, 341, 357, 398, 428
Sse9I AATT 5 cut(s) 57, 63, 69, 225, 445
SsiI CCGC 1 cut(s) 372
SspDI GGCGCC 1 cut(s) 307
SspI AATATT 1 cut(s) 378
StyD4I CCNGG 1 cut(s) 327
TaiI ACGT 1 cut(s) 420
TaqI TCGA 3 cut(s) 47, 93, 441
TasI AATT 5 cut(s) 57, 63, 69, 225, 445
TfiI GAWTC 3 cut(s) 116, 218, 262
Tru1I TTAA 7 cut(s) 29, 203, 224, 273, 293, 353, 407
Tru9I TTAA 7 cut(s) 29, 203, 224, 273, 293, 353, 407
TspDTI ATGAA 6 cut(s) 62, 108, 111, 231, 245, 438
TspGWI ACGGA 1 cut(s) 255
VspI ATTAAT 1 cut(s) 224
XapI RAATTY 1 cut(s) 445
Zsp2I ATGCAT 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.