FvH4_1g00840

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016542
Physical Location & Seq
Forward (+)
420250 .. 421119
870 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g00840.t1

Sequence Viewer

Length: 543 bp
ATGGCTTCCAAGACAATCTGTCTTCCAGCTCTCTCCCTACTCTTCCTGCTGTTTGCTCTCTCCGAAGCGAGAGAAGTCACGGTCGATGGTTGGACAGTCCAAAATTCCGATCACTTGACCAAGTGGACTCACAGGCACCATTTCACCGCTGGCGATGTTCTTAAATGGAACACGAGCACATCCAAGAGTTTTGACCCTCCAGTCCTGCAAGTGACAAAGGAGGCGTTTGAGAGCTGTGACATATCAAACCCACTCAAGGCTAACGTAACGGAGGTCACTCTGAACCCTGCTGGTATGTTCTACTTCATTAGCGGTGTTAAGGAGAATTGTGACAAGGGATTGAAGATAACTGTGAAGGTTCATGCTCATCGTAATAAAGATCATGGAGCTCCTGCTCCGGCACCCGCTCTTGCTCCAGAGATGAATAATCTAGCATCAGCGCCAGCAGCAGCGCCAACCAGTGCTGCACCTCATGTATTTATTGGTGTTGGGTTTATGGCTTTTGTTGTGATTGGGGTTGTAGGTGTAGTAGGGATGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

181

Amino Acids

19.22

Weight (kDa)

7.09

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 31 - 113 5.5e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016542)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30590
fragaria_vesca FvH4_1g00840
malus_domestica MD02G1006700.v1.1
prunus_persica Prupe.7G263900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0085571
rosa_laevigata RLG00000015701
rosa_multiflora Rmu_ssc0000347.1_g000005
rosa_roxburghii Rroxscaffold_2G00155260
rosa_rugosa Rorug01G0461400
rosa_samantha Rh2AG010300 Rh2BG010900 Rh2CG011800 Rh2DG012800
rosa_wichuraiana Rw2G000920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
AccB1I GGYRCC 2 cut(s) 135, 400
AccBSI CCGCTC 1 cut(s) 407
AciI CCGC 3 cut(s) 147, 312, 405
AcsI RAATTY 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 1 cut(s) 343
AhdI GACNNNNNGTC 1 cut(s) 18
AluBI AGCT 3 cut(s) 29, 234, 389
AluI AGCT 3 cut(s) 29, 234, 389
Alw21I GWGCWC 2 cut(s) 179, 391
ApeKI GCWGC 3 cut(s) 446, 449, 464
ApoI RAATTY 1 cut(s) 103
AspLEI GCGC 2 cut(s) 442, 454
AsuHPI GGTGA 1 cut(s) 136
BanI GGYRCC 2 cut(s) 135, 400
BanII GRGCYC 1 cut(s) 391
BauI CACGAG 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 2 cut(s) 179, 391
BbvI GCAGC 3 cut(s) 451, 458, 461
BccI CCATC 2 cut(s) 80, 529
BfaI CTAG 1 cut(s) 431
BfoI RGCGCY 2 cut(s) 443, 455
BisI GCNGC 3 cut(s) 447, 450, 465
BlsI GCNGC 3 cut(s) 448, 451, 466
BmeRI GACNNNNNGTC 1 cut(s) 18
BmiI GGNNCC 2 cut(s) 137, 402
BmsI GCATC 1 cut(s) 443
BpiI GAAGAC 1 cut(s) 14
BpmI CTGGAG 2 cut(s) 183, 399
BpuEI CTTGAG 1 cut(s) 239
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse1I ACTGG 2 cut(s) 200, 459
BseGI GGATG 2 cut(s) 179, 540
BseLI CCNNNNNNNGG 1 cut(s) 256
BseNI ACTGG 2 cut(s) 200, 459
BseXI GCAGC 3 cut(s) 451, 458, 461
BsgI GTGCAG 1 cut(s) 450
Bsh1285I CGRYCG 1 cut(s) 84
BshNI GGYRCC 2 cut(s) 135, 400
BsiEI CGRYCG 1 cut(s) 84
BsiHKAI GWGCWC 2 cut(s) 179, 391
BsiSI CCGG 1 cut(s) 398
BslI CCNNNNNNNGG 1 cut(s) 256
Bsp1286I GDGCHC 2 cut(s) 179, 391
Bsp143I GATC 2 cut(s) 109, 379
BspACI CCGC 3 cut(s) 147, 312, 405
BspLI GGNNCC 2 cut(s) 137, 402
BspT107I GGYRCC 2 cut(s) 135, 400
BsrBI CCGCTC 1 cut(s) 407
BsrI ACTGG 2 cut(s) 200, 459
BssMI GATC 2 cut(s) 109, 379
BssSI CACGAG 1 cut(s) 172
Bst2BI CACGAG 1 cut(s) 172
Bst4CI ACNGT 3 cut(s) 82, 97, 352
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 151, 444
BstF5I GGATG 2 cut(s) 179, 540
BstH2I RGCGCY 2 cut(s) 443, 455
BstHHI GCGC 2 cut(s) 442, 454
BstKTI GATC 2 cut(s) 112, 382
BstMBI GATC 2 cut(s) 109, 379
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstV1I GCAGC 3 cut(s) 451, 458, 461
BstV2I GAAGAC 1 cut(s) 14
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 2 cut(s) 179, 540
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 151, 444
CfoI GCGC 2 cut(s) 442, 454
CviAII CATG 3 cut(s) 362, 383, 473
CviJI RGCY 6 cut(s) 5, 29, 234, 260, 389, 500
CviKI_1 RGCY 6 cut(s) 5, 29, 234, 260, 389, 500
DpnI GATC 2 cut(s) 111, 381
DpnII GATC 2 cut(s) 109, 379
DrdI GACNNNNNNGTC 1 cut(s) 200
DriI GACNNNNNGTC 1 cut(s) 18
DseDI GACNNNNNNGTC 1 cut(s) 200
Eam1104I CTCTTC 1 cut(s) 47
Eam1105I GACNNNNNGTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 47
Ecl136II GAGCTC 1 cut(s) 389
Eco24I GRGCYC 1 cut(s) 391
Eco53kI GAGCTC 1 cut(s) 389
EcoICRI GAGCTC 1 cut(s) 389
EcoT38I GRGCYC 1 cut(s) 391
FaeI CATG 3 cut(s) 365, 386, 476
FaiI YATR 6 cut(s) 242, 296, 363, 384, 474, 497
FatI CATG 3 cut(s) 361, 382, 472
FauI CCCGC 1 cut(s) 412
Fnu4HI GCNGC 3 cut(s) 447, 450, 465
FokI GGATG 1 cut(s) 166
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 3 cut(s) 447, 450, 465
FspBI CTAG 1 cut(s) 431
GlaI GCGC 2 cut(s) 441, 453
GluI GCNGC 3 cut(s) 447, 450, 465
GsuI CTGGAG 2 cut(s) 183, 399
HaeII RGCGCY 2 cut(s) 443, 455
HapII CCGG 1 cut(s) 398
HhaI GCGC 2 cut(s) 442, 454
Hin1II CATG 3 cut(s) 365, 386, 476
Hin6I GCGC 2 cut(s) 440, 452
HinP1I GCGC 2 cut(s) 440, 452
HinfI GANTC 1 cut(s) 127
HpaII CCGG 1 cut(s) 398
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 3 cut(s) 64, 109, 282
Hpy188III TCNNGA 1 cut(s) 416
Hpy8I GTNNAC 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 3 cut(s) 82, 97, 352
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 2 cut(s) 208, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 3 cut(s) 365, 386, 476
HspAI GCGC 2 cut(s) 440, 452
Kzo9I GATC 2 cut(s) 109, 379
LmnI GCTCC 4 cut(s) 386, 394, 400, 418
Lsp1109I GCAGC 3 cut(s) 451, 458, 461
LweI GCATC 1 cut(s) 443
MaeI CTAG 1 cut(s) 431
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 6 cut(s) 76, 211, 236, 265, 274, 329
MalI GATC 2 cut(s) 111, 381
MbiI CCGCTC 1 cut(s) 407
MboI GATC 2 cut(s) 109, 379
MboII GAAGA 3 cut(s) 14, 34, 355
MhlI GDGCHC 2 cut(s) 179, 391
MluCI AATT 2 cut(s) 103, 325
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 4 cut(s) 207, 214, 265, 480
MseI TTAA 2 cut(s) 162, 318
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 1 cut(s) 398
MwoI GCNNNNNNNGC 1 cut(s) 446
NdeII GATC 2 cut(s) 109, 379
NlaIII CATG 3 cut(s) 365, 386, 476
NlaIV GGNNCC 2 cut(s) 137, 402
NmuCI GTSAC 5 cut(s) 76, 211, 236, 274, 329
PkrI GCNGC 3 cut(s) 448, 451, 466
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Psp124BI GAGCTC 1 cut(s) 391
PspN4I GGNNCC 2 cut(s) 137, 402
SacI GAGCTC 1 cut(s) 391
SaqAI TTAA 2 cut(s) 162, 318
SatI GCNGC 3 cut(s) 447, 450, 465
Sau3AI GATC 2 cut(s) 109, 379
SchI GAGTC 1 cut(s) 121
SduI GDGCHC 2 cut(s) 179, 391
SetI ASST 8 cut(s) 31, 236, 267, 276, 360, 391, 472, 526
SfaNI GCATC 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 103, 325
SsiI CCGC 3 cut(s) 147, 312, 405
SspMI CTAG 1 cut(s) 431
SstI GAGCTC 1 cut(s) 391
TaaI ACNGT 3 cut(s) 82, 97, 352
TaiI ACGT 1 cut(s) 267
TaqI TCGA 1 cut(s) 84
TasI AATT 2 cut(s) 103, 325
Tru1I TTAA 2 cut(s) 162, 318
Tru9I TTAA 2 cut(s) 162, 318
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 5 cut(s) 76, 211, 236, 274, 329
TseI GCWGC 3 cut(s) 446, 449, 464
Tsp45I GTSAC 5 cut(s) 76, 211, 236, 274, 329
TspDTI ATGAA 3 cut(s) 295, 350, 437
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 1 cut(s) 466
XapI RAATTY 1 cut(s) 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XspI CTAG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.