Rroxscaffold_2G00155260

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016542
Physical Location & Seq
Reverse (-)
91622351 .. 91623285
935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00155260.1

Sequence Viewer

Length: 531 bp
ATGGCTTCCAACACAATCTGCCTTCCAGTTCTGTCCATACTCTTCCTGCTGTTTGCTCTCTCTGAAGCGAGAGAAGTCACGGTCGATGGTTGGACAGTCGAAAACTCCGATCATTTGACCAAGTGGACTCACAGACACCATTTCACCACCGGCGATGTTCTCATATGGAAAACAAGCACACCCCTCGGTTTCGAGCCTCCAGTCCTGGAAGTGACAAAGGAGGCGTATAAGAGCTGTGAAATATCAAACCCACTCAAAGCAAACGTGACGGAGGTGACTTTGAACCCTGCTGGGCTGTTTTACTTTATTAGTGGCGTTAAGGAGCTTTGTGACAAGGGATTGAAGATAACTGTGAAGGTTCATGGTGCTCGTAAACATTATGGGGCTCCTACTCCGGCACCGGCACCGGCTCAGGCTCCGGAGAAGAATAATATGGCGGCAGAGCCAGCTGCACCACCAACCAGTGCTGCACCGCATGGATTTATGGGGGTGGGTTTATGGGTTTTGTTGCGATTGGGGTGGCAGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

176

Amino Acids

19.14

Weight (kDa)

7.05

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 31 - 113 5.5e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016542)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30590
fragaria_vesca FvH4_1g00840
malus_domestica MD02G1006700.v1.1
prunus_persica Prupe.7G263900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0085571
rosa_laevigata RLG00000015701
rosa_multiflora Rmu_ssc0000347.1_g000005
rosa_roxburghii Rroxscaffold_2G00155260
rosa_rugosa Rorug01G0461400
rosa_samantha Rh2AG010300 Rh2BG010900 Rh2CG011800 Rh2DG012800
rosa_wichuraiana Rw2G000920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 514
Acc36I ACCTGC 1 cut(s) 514
AccB1I GGYRCC 2 cut(s) 397, 403
AccIII TCCGGA 1 cut(s) 418
AciI CCGC 2 cut(s) 437, 473
AcuI CTGAAG 1 cut(s) 84
AgsI TTSAA 2 cut(s) 283, 343
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 3 cut(s) 234, 325, 449
AluI AGCT 3 cut(s) 234, 325, 449
Alw21I GWGCWC 1 cut(s) 370
Aor13HI TCCGGA 1 cut(s) 418
ApeKI GCWGC 2 cut(s) 449, 467
AsuHPI GGTGA 2 cut(s) 136, 286
BanI GGYRCC 2 cut(s) 397, 403
BanII GRGCYC 1 cut(s) 388
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 2 cut(s) 436, 454
BccI CCATC 1 cut(s) 80
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 1 cut(s) 206
BfuAI ACCTGC 1 cut(s) 514
BisI GCNGC 3 cut(s) 438, 450, 468
BlsI GCNGC 3 cut(s) 439, 451, 469
Bme1390I CCNGG 1 cut(s) 206
BmiI GGNNCC 4 cut(s) 387, 399, 405, 417
BmrFI CCNGG 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 184
BsaWI WCCGGW 1 cut(s) 418
Bse118I RCCGGY 3 cut(s) 149, 400, 406
Bse1I ACTGG 3 cut(s) 26, 200, 462
BseAI TCCGGA 1 cut(s) 418
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 425
BseNI ACTGG 3 cut(s) 26, 200, 462
BseXI GCAGC 2 cut(s) 436, 454
BseYI CCCAGC 1 cut(s) 290
BsgI GTGCAG 2 cut(s) 435, 453
Bsh1285I CGRYCG 1 cut(s) 84
BshNI GGYRCC 2 cut(s) 397, 403
BsiEI CGRYCG 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 370
BsiSI CCGG 5 cut(s) 150, 395, 401, 407, 419
Bsp1286I GDGCHC 2 cut(s) 370, 388
Bsp13I TCCGGA 1 cut(s) 418
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 2 cut(s) 437, 473
BspCNI CTCAG 1 cut(s) 424
BspEI TCCGGA 1 cut(s) 418
BspLI GGNNCC 4 cut(s) 387, 399, 405, 417
BspMI ACCTGC 1 cut(s) 514
BspT107I GGYRCC 2 cut(s) 397, 403
BsrFI RCCGGY 3 cut(s) 149, 400, 406
BsrI ACTGG 3 cut(s) 26, 200, 462
BssAI RCCGGY 3 cut(s) 149, 400, 406
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 3 cut(s) 82, 97, 352
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 1 cut(s) 411
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 436, 454
BtgZI GCGATG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 469
BveI ACCTGC 1 cut(s) 514
Cac8I GCNNGC 1 cut(s) 447
Cfr10I RCCGGY 3 cut(s) 149, 400, 406
CviAII CATG 2 cut(s) 362, 476
DdeI CTNAG 1 cut(s) 411
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 388
FaeI CATG 2 cut(s) 365, 479
FatI CATG 2 cut(s) 361, 475
FauNDI CATATG 1 cut(s) 164
Fnu4HI GCNGC 3 cut(s) 438, 450, 468
FriOI GRGCYC 1 cut(s) 388
Fsp4HI GCNGC 3 cut(s) 438, 450, 468
GluI GCNGC 3 cut(s) 438, 450, 468
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 183
HapII CCGG 5 cut(s) 150, 395, 401, 407, 419
Hin1II CATG 2 cut(s) 365, 479
HinfI GANTC 1 cut(s) 127
HpaII CCGG 5 cut(s) 150, 395, 401, 407, 419
HphI GGTGA 2 cut(s) 136, 286
Hpy166II GTNNAC 2 cut(s) 126, 374
Hpy188I TCNGA 2 cut(s) 64, 109
Hpy188III TCNNGA 1 cut(s) 419
Hpy8I GTNNAC 2 cut(s) 126, 374
HpyAV CCTTC 2 cut(s) 32, 349
HpyCH4III ACNGT 3 cut(s) 82, 97, 352
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 2 cut(s) 452, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 1 cut(s) 411
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 2 cut(s) 365, 479
Kpn2I TCCGGA 1 cut(s) 418
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 3 cut(s) 322, 391, 421
Lsp1109I GCAGC 2 cut(s) 436, 454
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 5 cut(s) 76, 211, 265, 274, 329
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 3 cut(s) 34, 355, 436
MhlI GDGCHC 2 cut(s) 370, 388
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 2 cut(s) 33, 71
MnlI CCTC 4 cut(s) 194, 207, 214, 265
MroI TCCGGA 1 cut(s) 418
MseI TTAA 1 cut(s) 318
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 5 cut(s) 150, 395, 401, 407, 419
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 446
NdeI CATATG 1 cut(s) 164
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 365, 479
NlaIV GGNNCC 4 cut(s) 387, 399, 405, 417
NmuCI GTSAC 5 cut(s) 76, 211, 265, 274, 329
PaqCI CACCTGC 1 cut(s) 514
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfoI TCCNGGA 1 cut(s) 204
PkrI GCNGC 3 cut(s) 439, 451, 469
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 4 cut(s) 387, 399, 405, 417
PvuII CAGCTG 1 cut(s) 449
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 3 cut(s) 438, 450, 468
Sau3AI GATC 1 cut(s) 109
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 2 cut(s) 370, 388
SetI ASST 7 cut(s) 236, 267, 276, 327, 360, 451, 528
SgrAI CRCCGGYG 1 cut(s) 149
SsiI CCGC 2 cut(s) 437, 473
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 3 cut(s) 82, 97, 352
TaiI ACGT 1 cut(s) 267
TaqI TCGA 3 cut(s) 84, 99, 192
TauI GCSGC 1 cut(s) 440
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 1 cut(s) 469
TseFI GTSAC 5 cut(s) 76, 211, 265, 274, 329
TseI GCWGC 2 cut(s) 449, 467
Tsp45I GTSAC 5 cut(s) 76, 211, 265, 274, 329
TspDTI ATGAA 1 cut(s) 350
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.