Rmu_ssc0000347.1_g000005

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000347.1
OG0016542
Physical Location & Seq
Forward (+)
23863 .. 24738
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000347.1_g000005.1.cds

Sequence Viewer

Length: 645 bp
atgtttaacattttccttcaatgcaccatgtttgaattcacatttacagcccaggagcagtcaaaacgtgacgtttcatttcgacacgtggtcgtcatgagcagcttctggtcctccaagcccagaccccaaaccaaacctgacgactatattaaccaacccccacaagaagtcacggtcgatggttggacagtcgaaaactccgatcatttgaccaagtggactcacagacaccatttcaccaccggcgatgttctcatatggaaaacgagcacacccctcggtttcgagcctccagtcctggaagtgacaaaggaggcgtatgagagctgtgaaatatcaaacccactcaaagcaaacgtgacggaggtgactttgaaccctgctgggctgttttacttcattagcggcgttaaggagctttgtgacaagggattgaagataactgtgaaggttcatggtgctcgtaaacattatggggctcctactccggcaccggctctggctccggagacgaataatatggcggcagagccagctgcaccaccaaccagtgctgcaccgcatggattaatggggggtgggtttatgggttttgttgcgattggggtggcaggtgtagtggggatggctctgaatgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

214

Amino Acids

23.4

Weight (kDa)

6.23

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016542)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30590
fragaria_vesca FvH4_1g00840
malus_domestica MD02G1006700.v1.1
prunus_persica Prupe.7G263900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0085571
rosa_laevigata RLG00000015701
rosa_multiflora Rmu_ssc0000347.1_g000005
rosa_roxburghii Rroxscaffold_2G00155260
rosa_rugosa Rorug01G0461400
rosa_samantha Rh2AG010300 Rh2BG010900 Rh2CG011800 Rh2DG012800
rosa_wichuraiana Rw2G000920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 605
Acc36I ACCTGC 1 cut(s) 605
AccB1I GGYRCC 1 cut(s) 493
AccIII TCCGGA 1 cut(s) 508
AciI CCGC 3 cut(s) 408, 527, 563
AcsI RAATTY 1 cut(s) 35
AcvI CACGTG 1 cut(s) 88
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 4 cut(s) 20, 35, 379, 439
AhdI GACNNNNNGTC 1 cut(s) 89
AjnI CCWGG 2 cut(s) 51, 300
AluBI AGCT 4 cut(s) 105, 330, 421, 539
AluI AGCT 4 cut(s) 105, 330, 421, 539
Alw21I GWGCWC 2 cut(s) 275, 466
Alw26I GTCTC 1 cut(s) 506
AlwNI CAGNNNCTG 1 cut(s) 108
Aor13HI TCCGGA 1 cut(s) 508
ApeKI GCWGC 3 cut(s) 102, 539, 557
ApoI RAATTY 1 cut(s) 35
AseI ATTAAT 1 cut(s) 572
AspS9I GGNCC 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 232, 382
AvaII GGWCC 1 cut(s) 111
BanI GGYRCC 1 cut(s) 493
BanII GRGCYC 1 cut(s) 484
BbrPI CACGTG 1 cut(s) 88
Bbv12I GWGCWC 2 cut(s) 275, 466
BbvI GCAGC 3 cut(s) 114, 526, 544
BccI CCATC 2 cut(s) 176, 622
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 2 cut(s) 53, 302
BcoDI GTCTC 1 cut(s) 506
BfuAI ACCTGC 1 cut(s) 605
BisI GCNGC 5 cut(s) 103, 409, 528, 540, 558
BlsI GCNGC 5 cut(s) 104, 410, 529, 541, 559
Bme1390I CCNGG 2 cut(s) 53, 302
Bme18I GGWCC 1 cut(s) 111
BmeRI GACNNNNNGTC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 3 cut(s) 483, 495, 507
BmrFI CCNGG 2 cut(s) 53, 302
BpmI CTGGAG 1 cut(s) 279
BsaAI YACGTR 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 51, 280
BsaWI WCCGGW 1 cut(s) 508
Bse118I RCCGGY 2 cut(s) 245, 496
Bse1I ACTGG 2 cut(s) 296, 552
BseAI TCCGGA 1 cut(s) 508
BseBI CCWGG 2 cut(s) 53, 302
BseDI CCNNGG 2 cut(s) 51, 280
BseGI GGATG 1 cut(s) 633
BseNI ACTGG 2 cut(s) 296, 552
BseXI GCAGC 3 cut(s) 114, 526, 544
BseYI CCCAGC 1 cut(s) 386
BsgI GTGCAG 2 cut(s) 525, 543
Bsh1285I CGRYCG 1 cut(s) 180
BshNI GGYRCC 1 cut(s) 493
BsiEI CGRYCG 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 275, 466
BsiSI CCGG 4 cut(s) 246, 491, 497, 509
BsmAI GTCTC 1 cut(s) 506
BsmBI CGTCTC 1 cut(s) 506
Bsp1286I GDGCHC 3 cut(s) 275, 466, 484
Bsp13I TCCGGA 1 cut(s) 508
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 3 cut(s) 408, 527, 563
BspEI TCCGGA 1 cut(s) 508
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 3 cut(s) 483, 495, 507
BspMI ACCTGC 1 cut(s) 605
BspT107I GGYRCC 1 cut(s) 493
BsrFI RCCGGY 2 cut(s) 245, 496
BsrI ACTGG 2 cut(s) 296, 552
BssAI RCCGGY 2 cut(s) 245, 496
BssECI CCNNGG 2 cut(s) 51, 280
BssMI GATC 1 cut(s) 205
Bst2UI CCWGG 2 cut(s) 53, 302
Bst4CI ACNGT 3 cut(s) 178, 193, 448
BstBAI YACGTR 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 537
BstF5I GGATG 1 cut(s) 633
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 1 cut(s) 205
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstNI CCWGG 2 cut(s) 53, 302
BstSCI CCNGG 2 cut(s) 51, 300
BstV1I GCAGC 3 cut(s) 114, 526, 544
BtgZI GCGATG 1 cut(s) 264
BtsCI GGATG 1 cut(s) 633
BtsIMutI CAGTG 1 cut(s) 559
BveI ACCTGC 1 cut(s) 605
Cac8I GCNNGC 1 cut(s) 537
CaiI CAGNNNCTG 1 cut(s) 108
CciI TCATGA 1 cut(s) 96
Cfr10I RCCGGY 2 cut(s) 245, 496
Cfr13I GGNCC 1 cut(s) 111
CviAII CATG 4 cut(s) 28, 97, 458, 566
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
DriI GACNNNNNGTC 1 cut(s) 89
Eam1105I GACNNNNNGTC 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 484
Eco47I GGWCC 1 cut(s) 111
Eco72I CACGTG 1 cut(s) 88
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 2 cut(s) 51, 300
EcoT38I GRGCYC 1 cut(s) 484
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 4 cut(s) 31, 100, 461, 569
FatI CATG 4 cut(s) 27, 96, 457, 565
FauNDI CATATG 1 cut(s) 260
Fnu4HI GCNGC 5 cut(s) 103, 409, 528, 540, 558
FokI GGATG 1 cut(s) 640
FriOI GRGCYC 1 cut(s) 484
Fsp4HI GCNGC 5 cut(s) 103, 409, 528, 540, 558
GluI GCNGC 5 cut(s) 103, 409, 528, 540, 558
GsaI CCCAGC 1 cut(s) 390
GsuI CTGGAG 1 cut(s) 279
HapII CCGG 4 cut(s) 246, 491, 497, 509
Hin1II CATG 4 cut(s) 31, 100, 461, 569
HinfI GANTC 1 cut(s) 223
HpaII CCGG 4 cut(s) 246, 491, 497, 509
HphI GGTGA 2 cut(s) 232, 382
Hpy166II GTNNAC 2 cut(s) 222, 470
Hpy188I TCNGA 2 cut(s) 205, 636
Hpy188III TCNNGA 2 cut(s) 97, 509
Hpy8I GTNNAC 2 cut(s) 222, 470
HpyAV CCTTC 2 cut(s) 26, 445
HpyCH4III ACNGT 3 cut(s) 178, 193, 448
HpyCH4IV ACGT 4 cut(s) 67, 72, 87, 360
HpyCH4V TGCA 3 cut(s) 24, 542, 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpySE526I ACGT 4 cut(s) 67, 72, 87, 360
Hsp92II CATG 4 cut(s) 31, 100, 461, 569
Kpn2I TCCGGA 1 cut(s) 508
Kzo9I GATC 1 cut(s) 205
LmnI GCTCC 4 cut(s) 55, 418, 487, 511
Lsp1109I GCAGC 3 cut(s) 114, 526, 544
MaeII ACGT 4 cut(s) 67, 72, 87, 360
MaeIII GTNAC 6 cut(s) 68, 172, 307, 361, 370, 425
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 1 cut(s) 451
MhlI GDGCHC 3 cut(s) 275, 466, 484
MluCI AATT 1 cut(s) 35
MlyI GAGTC 1 cut(s) 217
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 5 cut(s) 124, 290, 303, 310, 361
MroI TCCGGA 1 cut(s) 508
MseI TTAA 4 cut(s) 6, 153, 414, 572
MspA1I CMGCKG 1 cut(s) 539
MspI CCGG 4 cut(s) 246, 491, 497, 509
MspR9I CCNGG 2 cut(s) 53, 302
MvaI CCWGG 2 cut(s) 53, 302
MwoI GCNNNNNNNGC 1 cut(s) 536
NdeI CATATG 1 cut(s) 260
NdeII GATC 1 cut(s) 205
NlaIII CATG 4 cut(s) 31, 100, 461, 569
NlaIV GGNNCC 3 cut(s) 483, 495, 507
NmuCI GTSAC 6 cut(s) 68, 172, 307, 361, 370, 425
PagI TCATGA 1 cut(s) 96
PaqCI CACCTGC 1 cut(s) 605
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 5 cut(s) 104, 410, 529, 541, 559
PleI GAGTC 1 cut(s) 217
PmaCI CACGTG 1 cut(s) 88
PmlI CACGTG 1 cut(s) 88
PpsI GAGTC 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 88
PshBI ATTAAT 1 cut(s) 572
Psp6I CCWGG 2 cut(s) 51, 300
PspCI CACGTG 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 386
PspGI CCWGG 2 cut(s) 51, 300
PspN4I GGNNCC 3 cut(s) 483, 495, 507
PspPI GGNCC 1 cut(s) 111
PstNI CAGNNNCTG 1 cut(s) 108
PvuII CAGCTG 1 cut(s) 539
SaqAI TTAA 4 cut(s) 6, 153, 414, 572
SatI GCNGC 5 cut(s) 103, 409, 528, 540, 558
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 1 cut(s) 111
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 2 cut(s) 53, 302
SduI GDGCHC 3 cut(s) 275, 466, 484
SgrAI CRCCGGYG 1 cut(s) 245
SinI GGWCC 1 cut(s) 111
Sse9I AATT 1 cut(s) 35
SsiI CCGC 3 cut(s) 408, 527, 563
StyD4I CCNGG 2 cut(s) 51, 300
TaaI ACNGT 3 cut(s) 178, 193, 448
TaiI ACGT 4 cut(s) 70, 75, 90, 363
TaqI TCGA 4 cut(s) 82, 180, 195, 288
TasI AATT 1 cut(s) 35
TauI GCSGC 2 cut(s) 411, 530
Tru1I TTAA 4 cut(s) 6, 153, 414, 572
Tru9I TTAA 4 cut(s) 6, 153, 414, 572
TscAI CASTG 1 cut(s) 559
TseFI GTSAC 6 cut(s) 68, 172, 307, 361, 370, 425
TseI GCWGC 3 cut(s) 102, 539, 557
Tsp45I GTSAC 6 cut(s) 68, 172, 307, 361, 370, 425
TspDTI ATGAA 3 cut(s) 66, 391, 446
TspGWI ACGGA 1 cut(s) 380
TspRI CASTG 1 cut(s) 559
VpaK11BI GGWCC 1 cut(s) 111
VspI ATTAAT 1 cut(s) 572
XapI RAATTY 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.