Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002170

Physical Location & Seq

Genomic Coordinates Forward (+)

55472553 .. 55474109

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0461400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAAGAGCAAGAAGCTCAAATGGAGATAGATGTCTATACAGAACAAGGAATCACAGCAACATTTTCACTCTCTCGGACCGACACCGTGAAAACCCTATTTTCGATTTTCAAGGAATCTTTTCCCCCAGCAGCTGAGGATCAATCAGGGTTTCATCTATTTTTTCAGAATATACAACTGAAGCAGAATAATCAAGTAAGAGATGAGATTCAAAGAATAATATTCGAGAGTAAACTGGAGGAGCCGGATCAAATATCATTACTGTTTGTCCCCTATCCAAGTTGTGGCAGTGCAAAATGTAATAAGGTTGATTGTCAGTCAGGAAATACACGTTTCAAGTACTACCGTTACGGAAGATTGTGGAAATTGCGCTACTTGTGTAGGACATGCCGAAAGGAGTTCAATTTCGACATGCCACAACCTCCGAGGCCAACCAAGCGGCAATCGTTGCCCGCCAAGATCCCTCCACCACCCTCAAAGATGTGCCTACCTCCCCCTCCACCACCCCCGGTGCCGGTTGCTTCTTCTTCTTCTTCTTCAGTCTTGGATTTGAGTGATCGAGTACTAGATCACTGCAAAGCTCTACATCAGTACACTGCCCAACTGCAAATGGAGAAATCGACTTTGGAAAAGAAGAATAAGGCTTTGGAACAAGCATTGACCTCACTTGAGGCCTCTTATAGGTTTGAGATCAATGCATTGAGGATGGAGCGAGATGCTTTCAAGGAGGAGCGCGATGACACTCTTAGGAAATTCGAGGCTATACTACAGAGTTACAGAATCCATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005217 GO:0005221 GO:0005223 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042391 GO:0043855 GO:0044425 GO:0044459 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0099094

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

263

Amino Acids

30.54

Weight (kDa)

8.59

Isoelectric Point (pI)

59.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT4G30560 AT4G30560 AT4G30560 AT4G30560 AT4G30560 AT5G57940 AT5G57940 AT5G57940
fragaria_vesca	FvH4_1g00870 FvH4_1g00870 FvH4_1g00870 FvH4_1g00870
malus_domestica	MD02G1007200.v1.1 MD15G1144500.v1.1
prunus_persica	Prupe.7G263200_v2.0.a1 Prupe.7G263200_v2.0.a1 Prupe.7G263200_v2.0.a1 Prupe.7G263200_v2.0.a1
pyrus_communis	pycom02g00610 pycom02g00620 pycom15g13600 pycom15g13610
rosa_chinensis	RchiOBHm_Chr2g0085581
rosa_laevigata	RLG00000015703
rosa_multiflora	Rmu_co8217668.1_g000001 Rmu_ssc0000347.1_g000007
rosa_roxburghii	Rroxscaffold_2G00155250
rosa_rugosa	Rorug01G0461400
rosa_samantha	Rh2AG010500 Rh2BG011100 Rh2CG012000 Rh2DG013000
rosa_wichuraiana	Rw2G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	511
AccB7I	CCANNNNNTGG	1 cut(s)	284
AccII	CGCG	1 cut(s)	735
AciI	CCGC	2 cut(s)	439, 453
AclWI	GGATC	3 cut(s)	147, 255, 454
AcsI	RAATTY	1 cut(s)	752
AcuI	CTGAAG	2 cut(s)	200, 522
AfaI	GTAC	3 cut(s)	341, 564, 593
AfiI	CCNNNNNNNGG	3 cut(s)	284, 514, 681
AflIII	ACRYGT	1 cut(s)	329
AgsI	TTSAA	5 cut(s)	112, 212, 337, 403, 724
AjuI	GAANNNNNNNTTGG	4 cut(s)	608, 629, 640, 661
AluBI	AGCT	3 cut(s)	17, 134, 581
AluI	AGCT	3 cut(s)	17, 134, 581
AlwI	GGATC	3 cut(s)	147, 255, 454
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	2 cut(s)	428, 672
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	752
Asp700I	GAANNNNTTC	1 cut(s)	120
AspLEI	GCGC	2 cut(s)	372, 735
AspS9I	GGNCC	1 cut(s)	78
AsuC2I	CCSGG	1 cut(s)	509
AvaII	GGWCC	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	511
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	1 cut(s)	700
BcnI	CCSGG	1 cut(s)	509
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	767
BisI	GCNGC	2 cut(s)	132, 440
BlsI	GCNGC	2 cut(s)	133, 441
BmcAI	AGTACT	2 cut(s)	341, 564
Bme1390I	CCNGG	1 cut(s)	509
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	2 cut(s)	243, 513
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	1 cut(s)	706
BpmI	CTGGAG	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	689
BpuMI	CCSGG	1 cut(s)	509
BsaJI	CCNNGG	2 cut(s)	425, 507
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 514, 681
Bse118I	RCCGGY	1 cut(s)	514
Bse1I	ACTGG	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	425, 507
BseGI	GGATG	1 cut(s)	711
BseLI	CCNNNNNNNGG	3 cut(s)	284, 514, 681
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	240
BseRI	GAGGAG	2 cut(s)	254, 743
BseXI	GCAGC	1 cut(s)	143
BseYI	CCCAGC	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	735
BshFI	GGCC	2 cut(s)	430, 674
BshNI	GGYRCC	1 cut(s)	511
BsiSI	CCGG	3 cut(s)	245, 509, 515
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	3 cut(s)	284, 514, 681
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	430, 674
Bsp143I	GATC	6 cut(s)	139, 247, 459, 556, 568, 690
BspACI	CCGC	2 cut(s)	439, 453
BspANI	GGCC	2 cut(s)	430, 674
BspCNI	CTCAG	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	735
BspLI	GGNNCC	2 cut(s)	243, 513
BspPI	GGATC	3 cut(s)	147, 255, 454
BspT107I	GGYRCC	1 cut(s)	511
BsrFI	RCCGGY	1 cut(s)	514
BsrI	ACTGG	1 cut(s)	240
BssAI	RCCGGY	1 cut(s)	514
BssECI	CCNNGG	2 cut(s)	425, 507
BssMI	GATC	6 cut(s)	139, 247, 459, 556, 568, 690
Bst4CI	ACNGT	3 cut(s)	88, 264, 347
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	2 cut(s)	135, 746
BstENI	CCTNNNNNAGG	1 cut(s)	679
BstF5I	GGATG	1 cut(s)	711
BstFNI	CGCG	1 cut(s)	735
BstHHI	GCGC	2 cut(s)	372, 735
BstKTI	GATC	6 cut(s)	142, 250, 462, 559, 571, 693
BstMBI	GATC	6 cut(s)	139, 247, 459, 556, 568, 690
BstMWI	GCNNNNNNNGC	2 cut(s)	436, 448
BstNSI	RCATGY	2 cut(s)	390, 415
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	1 cut(s)	767
BstUI	CGCG	1 cut(s)	735
BstV1I	GCAGC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	430, 674
BtgZI	GCGATG	1 cut(s)	750
BtsCI	GGATG	1 cut(s)	711
BtsI	GCAGTG	3 cut(s)	295, 571, 594
BtsIMutI	CAGTG	3 cut(s)	295, 571, 594
Cac8I	GCNNGC	1 cut(s)	453
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	2 cut(s)	372, 735
Cfr10I	RCCGGY	1 cut(s)	514
Cfr13I	GGNCC	1 cut(s)	78
CpoI	CGGWCCG	1 cut(s)	78
Csp6I	GTAC	3 cut(s)	340, 563, 592
CspI	CGGWCCG	1 cut(s)	78
CviAII	CATG	2 cut(s)	387, 412
CviJI	RGCY	8 cut(s)	17, 134, 244, 430, 581, 644, 674, 761
CviKI_1	RGCY	8 cut(s)	17, 134, 244, 430, 581, 644, 674, 761
CviQI	GTAC	3 cut(s)	340, 563, 592
DdeI	CTNAG	2 cut(s)	135, 746
DpnI	GATC	6 cut(s)	141, 249, 461, 558, 570, 692
DpnII	GATC	6 cut(s)	139, 247, 459, 556, 568, 690
Eco147I	AGGCCT	1 cut(s)	674
Eco47I	GGWCC	1 cut(s)	78
Eco57I	CTGAAG	2 cut(s)	200, 522
EcoNI	CCTNNNNNAGG	1 cut(s)	679
EcoT22I	ATGCAT	1 cut(s)	700
FaeI	CATG	2 cut(s)	390, 415
FaiI	YATR	7 cut(s)	39, 173, 388, 413, 681, 764, 786
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	2 cut(s)	386, 411
FauI	CCCGC	1 cut(s)	460
Fnu4HI	GCNGC	2 cut(s)	132, 440
FokI	GGATG	1 cut(s)	718
Fsp4HI	GCNGC	2 cut(s)	132, 440
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	2 cut(s)	371, 734
GluI	GCNGC	2 cut(s)	132, 440
GsaI	CCCAGC	1 cut(s)	131
GsuI	CTGGAG	1 cut(s)	257
HaeIII	GGCC	2 cut(s)	430, 674
HapII	CCGG	3 cut(s)	245, 509, 515
HhaI	GCGC	2 cut(s)	372, 735
Hin1II	CATG	2 cut(s)	390, 415
Hin6I	GCGC	2 cut(s)	370, 733
HinP1I	GCGC	2 cut(s)	370, 733
HinfI	GANTC	4 cut(s)	51, 116, 208, 780
HpaII	CCGG	3 cut(s)	245, 509, 515
Hpy166II	GTNNAC	2 cut(s)	233, 594
Hpy188I	TCNGA	3 cut(s)	78, 168, 426
Hpy188III	TCNNGA	2 cut(s)	226, 321
Hpy8I	GTNNAC	2 cut(s)	233, 594
HpyCH4III	ACNGT	3 cut(s)	88, 264, 347
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	4 cut(s)	293, 576, 607, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	436, 448
HpyF3I	CTNAG	2 cut(s)	135, 746
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	2 cut(s)	390, 415
HspAI	GCGC	2 cut(s)	370, 733
Kzo9I	GATC	6 cut(s)	139, 247, 459, 556, 568, 690
LmnI	GCTCC	3 cut(s)	241, 709, 730
LpnPI	CCDG	7 cut(s)	132, 141, 221, 258, 306, 522, 528
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	1 cut(s)	706
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	2 cut(s)	347, 773
MalI	GATC	6 cut(s)	141, 249, 461, 558, 570, 692
MboI	GATC	6 cut(s)	139, 247, 459, 556, 568, 690
MboII	GAAGA	8 cut(s)	17, 366, 516, 519, 522, 525, 528, 646
MflI	RGATCY	1 cut(s)	459
MluCI	AATT	3 cut(s)	365, 403, 752
Mph1103I	ATGCAT	1 cut(s)	700
MroXI	GAANNNNTTC	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	3 cut(s)	245, 509, 515
MspR9I	CCNGG	1 cut(s)	509
MvnI	CGCG	1 cut(s)	735
MwoI	GCNNNNNNNGC	2 cut(s)	436, 448
NciI	CCSGG	1 cut(s)	509
NdeII	GATC	6 cut(s)	139, 247, 459, 556, 568, 690
NlaIII	CATG	2 cut(s)	390, 415
NlaIV	GGNNCC	2 cut(s)	243, 513
NsiI	ATGCAT	1 cut(s)	700
NspI	RCATGY	2 cut(s)	390, 415
PceI	AGGCCT	1 cut(s)	674
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	4 cut(s)	51, 116, 208, 780
PflMI	CCANNNNNTGG	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	133, 441
PspFI	CCCAGC	1 cut(s)	127
PspN4I	GGNNCC	2 cut(s)	243, 513
PspPI	GGNCC	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	459
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	3 cut(s)	341, 564, 593
RsaNI	GTAC	3 cut(s)	340, 563, 592
Rsr2I	CGGWCCG	1 cut(s)	78
RsrII	CGGWCCG	1 cut(s)	78
SatI	GCNGC	2 cut(s)	132, 440
Sau3AI	GATC	6 cut(s)	139, 247, 459, 556, 568, 690
Sau96I	GGNCC	1 cut(s)	78
ScaI	AGTACT	2 cut(s)	341, 564
ScrFI	CCNGG	1 cut(s)	509
SfaNI	GCATC	1 cut(s)	706
SfcI	CTRYAG	1 cut(s)	767
SinI	GGWCC	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	3 cut(s)	365, 403, 752
SseBI	AGGCCT	1 cut(s)	674
SsiI	CCGC	2 cut(s)	439, 453
SspI	AATATT	1 cut(s)	222
SspMI	CTAG	1 cut(s)	566
StuI	AGGCCT	1 cut(s)	674
StyD4I	CCNGG	1 cut(s)	507
TaaI	ACNGT	3 cut(s)	88, 264, 347
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	6 cut(s)	104, 225, 408, 559, 620, 756
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	3 cut(s)	365, 403, 752
TatI	WGTACW	3 cut(s)	339, 562, 591
TauI	GCSGC	1 cut(s)	442
TfiI	GAWTC	4 cut(s)	51, 116, 208, 780
TscAI	CASTG	3 cut(s)	295, 578, 601
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	3 cut(s)	295, 578, 601
Van91I	CCANNNNNTGG	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	78
XagI	CCTNNNNNAGG	1 cut(s)	679
XapI	RAATTY	1 cut(s)	752
XceI	RCATGY	2 cut(s)	390, 415
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	1 cut(s)	566
ZrmI	AGTACT	2 cut(s)	341, 564
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.