Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002170

Physical Location & Seq

Genomic Coordinates Reverse (-)

950736 .. 957063

Gene Structure 6328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46113

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGTTTGACTGTGGCTACACGTCACAGTATCCGGGAGGGCAGAGAGACAAGTTTGTGAGGCTGGATGACTTGGACTCTCGATTATCGTCCTCTTCTGATACTGGAGTGAGAAGGTGTGGACTTAATATTGAAGGACTGACCCGGAGTGCTCCTTCAAGGGATACATCCTTTAAAAAAGGAATGAGAAAGGGCTCTGAAGGACTTAAGTCCATTGGTCGATCACTTGGATTTGGTGTTTCTCGTGCAGTATTCCCTGAAGATCTTAAAGTTTCAGACAAGAAGATATTTGACCCTCAGGACAAATTTCTCCTTTTTTGGAATAGACTTTTCGTCATATCATGTATTCTGGCGGTGTCTGTGGATCCACTTTTTTTCTACCTTCCAGTTATTAATAATGCATCAAATTGTCTTGGTATAGACCGAAAGTTGGCTGTCATAGCAACCACATTGCGAATGATTGTTGATGCGTTCTTTCTTCTTCACATGGCTCTCCAGTTTCGGACAGCCTACATTGCTCCATCATCTCGGGTTTTTGGACGAGGTGAACTGGTGATTGACCCGGCAAGAATAGCTAAGAGATACTTACGAGGTTATTTCATCATTGATTTTCTTTCAGTGCTACCTCTACCACAGATTGTAGTTTGGAGGTTTCTCCAGCGGTCTGGAGGTTCAGATGTGCTCGCTACAAAACAGGCCTTGCTTTTTATTATCTTGCTTCAGTACATTCCCAGACTTCTTCGAGTCTTGCCTCTAACCTCCGAACTGAAAAGAACAGCTGGTGTTTTTGCTGAAACTGCTTGGGCAGGTGCTGCATACTATTTGCTATTATACTTGCTCGCTAGTCATATTGTTGGGGCATTTTGGTATTTGTTAGCTGTAGAACGCAATGATACATGCTGGCAGAAGGCTTGTACTGACATTGGCAACTCATGCAATAAAAGTTTACTGTACTGTGCGGACGAGAAACTGCCACCTGATGTGAATCTGACTTGGTCCAAAGTTAGTGATATCATCCAGTCAAATTGCTCATCGGCTGATGACAATAAATATTTTGATTTTGGAATCTACCAACAGGCTTTATCATCTGGAATTGTTTCATCTAAGAAGTTCATCTCTAAATATTGTTACTGTTTATGGTGGGGGTTACAAAACTTAAGTACACTTGGCCAAGGTCTCTCAACTAGCACCTATCCCGGAGAGGTTATATTTTCCATAGCACTAGCTATATTTGGGTTGATCCTCTTCGCACTTCTGATAGGAAATATGCAGACCTACCTCCAATCTCTTACCATTCGACTTGAGGAGATGAGAGTCAAAAGGCGTGATTCAGAGCAGTGGATGCACCATCGCTTACTCCCACAAGACCTTCGGGAGCGAGTTAGGCGATATGATCAATATAAGTGGTTGGAAACACGCGGCGTGGATGAGGAGAATTTGGTTCAGAGTCTACCAAAGGATCTCAGGAGAGATATCAAGAGGCATCTCTGTTTGGCGTTAGTGAGGAGGGTTCCTCTGTTTGAGAATATGGATGAGAGGTTGCTTGATGCCATTTGTGAGCGATTGAAACCAAGTTTGTTCACACAGAGTACCTACATAGTTCGAGAAGGAGATCCAGTTGATGAGATGCTTTTTATTATACGTGGTCGCCTTGAGAGTGTAACCACAGATGGTGGTAGGAGTGGGTTTTTCAACCGCAGTCTACTAAAAGAAGGGGATTTCTGTGGGGAGGAGCTTCTAACTTGGGCACTGGATCCCAAATCTAGTTCTAACCTTCCTTCATCTACTCGGACTGTAAAGGCATTAGGAGAGGTTGAGGCTTTTGCTCTTATAGCGGAAGAGCTGAAATTTGTCGCCAGTCAGTTTAGGCGCCTTCATAGTAGGCAGGTTCAACACACCTTTCGTTTCTACTCACAGCAGTGGCGTACTTGGGCTGCCCGCTTCATCCAAGCGGCATGGCGTCGCTATTCCAAGAGGAAAATCATGGAGCTTCGCCGGAAGGAAGAGGAAGAAGCAGAAACAGAAGCACTGGCAGGTGCCCGCCACAATGTTAGCATAGGTGCCACCTTTTTAGCCTCCAGGTTTGCTGCAAATGCACTTCGTGGTGTTCATCGAAATAGGAATGCAAAGAGTGCTCAGAGCGCTCGAGATTTGGTCAAATTACAAAAGCCTCCTGAGCCTGATTTTAGTGCTGAAGATGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005217 GO:0005221 GO:0005223 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042391 GO:0043855 GO:0044425 GO:0044459 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0099094

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

734

Amino Acids

83.73

Weight (kDa)

9.33

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	105 - 431	5.1e-25	Ion transport protein
cNMP_binding	PF00027	526 - 614	1.6e-06	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT4G30560 AT4G30560 AT4G30560 AT4G30560 AT4G30560 AT5G57940 AT5G57940 AT5G57940
fragaria_vesca	FvH4_1g00870 FvH4_1g00870 FvH4_1g00870 FvH4_1g00870
malus_domestica	MD02G1007200.v1.1 MD15G1144500.v1.1
prunus_persica	Prupe.7G263200_v2.0.a1 Prupe.7G263200_v2.0.a1 Prupe.7G263200_v2.0.a1 Prupe.7G263200_v2.0.a1
pyrus_communis	pycom02g00610 pycom02g00620 pycom15g13600 pycom15g13610
rosa_chinensis	RchiOBHm_Chr2g0085581
rosa_laevigata	RLG00000015703
rosa_multiflora	Rmu_co8217668.1_g000001 Rmu_ssc0000347.1_g000007
rosa_roxburghii	Rroxscaffold_2G00155250
rosa_rugosa	Rorug01G0461400
rosa_samantha	Rh2AG010500 Rh2BG011100 Rh2CG012000 Rh2DG013000
rosa_wichuraiana	Rw2G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	794, 2021
Acc36I	ACCTGC	3 cut(s)	794, 1873, 2021
AccB1I	GGYRCC	3 cut(s)	1866, 2033, 2057
AccI	GTMKAC	2 cut(s)	1447, 1699
AccII	CGCG	1 cut(s)	1416
AciI	CCGC	9 cut(s)	350, 658, 956, 1416, 1693, 1832, 1936, 1949, 2038
AclWI	GGATC	7 cut(s)	356, 369, 1231, 1464, 1604, 1745, 1758
AcoI	YGGCCR	1 cut(s)	1165
AcsI	RAATTY	3 cut(s)	302, 1432, 1844
AcuI	CTGAAG	3 cut(s)	216, 276, 701
AcyI	GRCGYC	2 cut(s)	1867, 1957
AdeI	CACNNNGTG	1 cut(s)	2099
AfaI	GTAC	6 cut(s)	722, 913, 950, 1159, 1588, 1924
AfeI	AGCGCT	1 cut(s)	2140
AfiI	CCNNNNNNNGG	1 cut(s)	427
AflII	CTTAAG	2 cut(s)	203, 1153
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	5 cut(s)	131, 156, 1564, 1690, 1889
AhdI	GACNNNNNGTC	1 cut(s)	329
AjiI	CACGTC	1 cut(s)	21
AjnI	CCWGG	1 cut(s)	2075
AleI	CACNNNNGTG	1 cut(s)	1915
AluBI	AGCT	7 cut(s)	572, 776, 875, 1223, 1732, 1840, 1987
AluI	AGCT	7 cut(s)	572, 776, 875, 1223, 1732, 1840, 1987
Alw21I	GWGCWC	3 cut(s)	151, 681, 2134
Alw26I	GTCTC	2 cut(s)	39, 1178
AlwI	GGATC	7 cut(s)	356, 369, 1231, 1464, 1604, 1745, 1758
AlwNI	CAGNNNCTG	1 cut(s)	809
Ama87I	CYCGRG	2 cut(s)	525, 2142
Aor51HI	AGCGCT	1 cut(s)	2140
AoxI	GGCC	2 cut(s)	693, 1165
ApeKI	GCWGC	3 cut(s)	809, 1931, 2084
ApoI	RAATTY	3 cut(s)	302, 1432, 1844
AseI	ATTAAT	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	1093
AspLEI	GCGC	2 cut(s)	1869, 2141
AspS9I	GGNCC	1 cut(s)	993
AsuC2I	CCSGG	4 cut(s)	33, 142, 560, 1194
AsuHPI	GGTGA	2 cut(s)	554, 562
AvaI	CYCGRG	2 cut(s)	525, 2142
AvaII	GGWCC	1 cut(s)	993
AxyI	CCTNAGG	1 cut(s)	294
BaeGI	GKGCMC	2 cut(s)	1747, 2038
BaeI	ACNNNNGTAYC	2 cut(s)	90, 123
BalI	TGGCCA	1 cut(s)	1167
BamHI	GGATCC	2 cut(s)	361, 1750
BanI	GGYRCC	3 cut(s)	1866, 2033, 2057
BanII	GRGCYC	1 cut(s)	194
BauI	CACGAG	1 cut(s)	240
Bbv12I	GWGCWC	3 cut(s)	151, 681, 2134
BbvI	GCAGC	3 cut(s)	796, 1918, 2071
BccI	CCATC	3 cut(s)	526, 1353, 1661
BciT130I	CCWGG	1 cut(s)	2077
BciVI	GTATCC	2 cut(s)	39, 154
BclI	TGATCA	1 cut(s)	1390
BcnI	CCSGG	4 cut(s)	33, 142, 560, 1194
BcoDI	GTCTC	2 cut(s)	39, 1178
BfaI	CTAG	4 cut(s)	840, 1182, 1220, 1761
BfmI	CTRYAG	1 cut(s)	876
BfoI	RGCGCY	2 cut(s)	1870, 2142
BfrI	CTTAAG	2 cut(s)	203, 1153
BfuAI	ACCTGC	3 cut(s)	794, 1873, 2021
BfuI	GTATCC	2 cut(s)	39, 154
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	5 cut(s)	810, 1417, 1932, 1950, 2085
BlsI	GCNGC	5 cut(s)	811, 1418, 1933, 1951, 2086
Bme1390I	CCNGG	5 cut(s)	33, 142, 560, 1194, 2077
Bme18I	GGWCC	1 cut(s)	993
BmeRI	GACNNNNNGTC	1 cut(s)	329
BmeT110I	CYCGRG	2 cut(s)	525, 2142
BmgBI	CACGTC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	993
BmiI	GGNNCC	6 cut(s)	363, 1509, 1752, 1868, 2035, 2059
BmrFI	CCNGG	5 cut(s)	33, 142, 560, 1194, 2077
BmsI	GCATC	7 cut(s)	407, 454, 1329, 1489, 1534, 1614, 2185
BoxI	GACNNNNGTC	1 cut(s)	205
BplI	GAGNNNNNCTC	2 cut(s)	1495, 1527
BpmI	CTGGAG	5 cut(s)	123, 476, 638, 684, 2059
Bpu10I	CCTNAGC	1 cut(s)	2172
BpuEI	CTTGAG	2 cut(s)	1319, 1670
BpuMI	CCSGG	4 cut(s)	33, 142, 560, 1194
BsaAI	YACGTR	1 cut(s)	1640
BsaBI	GATNNNNATC	1 cut(s)	981
BsaHI	GRCGYC	2 cut(s)	1867, 1957
BsaI	GGTCTC	1 cut(s)	1178
BsaJI	CCNNGG	1 cut(s)	1168
BsaXI	ACNNNNNCTCC	2 cut(s)	1599, 1629
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	9 cut(s)	106, 383, 493, 552, 1015, 1613, 1752, 1854, 2031
Bse21I	CCTNAGG	1 cut(s)	294
Bse3DI	GCAATG	3 cut(s)	446, 510, 892
Bse8I	GATNNNNATC	1 cut(s)	981
BseBI	CCWGG	1 cut(s)	2077
BseDI	CCNNGG	1 cut(s)	1168
BseGI	GGATG	7 cut(s)	70, 164, 1011, 1344, 1429, 1534, 1941
BseJI	GATNNNNATC	1 cut(s)	981
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	3 cut(s)	446, 510, 892
BseMII	CTCAG	4 cut(s)	308, 1474, 2147, 2163
BseNI	ACTGG	9 cut(s)	106, 383, 493, 552, 1015, 1613, 1752, 1854, 2031
BseRI	GAGGAG	4 cut(s)	1316, 1442, 1516, 1742
BseSI	GKGCMC	2 cut(s)	1747, 2038
BseXI	GCAGC	3 cut(s)	796, 1918, 2071
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	1416
BshFI	GGCC	2 cut(s)	695, 1167
BshNI	GGYRCC	3 cut(s)	1866, 2033, 2057
BsiHKAI	GWGCWC	3 cut(s)	151, 681, 2134
BsiHKCI	CYCGRG	2 cut(s)	525, 2142
BsiSI	CCGG	5 cut(s)	32, 142, 560, 1194, 1993
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	2 cut(s)	39, 1178
BsmI	GAATGC	1 cut(s)	2125
BsnI	GGCC	2 cut(s)	695, 1167
Bso31I	GGTCTC	1 cut(s)	1178
BsoBI	CYCGRG	2 cut(s)	525, 2142
Bsp1286I	GDGCHC	6 cut(s)	151, 194, 681, 1747, 2038, 2134
Bsp143I	GATC	8 cut(s)	218, 259, 361, 1236, 1390, 1456, 1609, 1750
BspACI	CCGC	9 cut(s)	350, 658, 956, 1416, 1693, 1832, 1936, 1949, 2038
BspANI	GGCC	2 cut(s)	695, 1167
BspCNI	CTCAG	4 cut(s)	307, 1473, 2146, 2164
BspFNI	CGCG	1 cut(s)	1416
BspLI	GGNNCC	6 cut(s)	363, 1509, 1752, 1868, 2035, 2059
BspMI	ACCTGC	3 cut(s)	794, 1873, 2021
BspPI	GGATC	7 cut(s)	356, 369, 1231, 1464, 1604, 1745, 1758
BspQI	GCTCTTC	1 cut(s)	1830
BspT107I	GGYRCC	3 cut(s)	1866, 2033, 2057
BspTI	CTTAAG	2 cut(s)	203, 1153
BspTNI	GGTCTC	1 cut(s)	1178
BsrDI	GCAATG	3 cut(s)	446, 510, 892
BsrI	ACTGG	9 cut(s)	106, 383, 493, 552, 1015, 1613, 1752, 1854, 2031
BssECI	CCNNGG	1 cut(s)	1168
BssMI	GATC	8 cut(s)	218, 259, 361, 1236, 1390, 1456, 1609, 1750
BssNI	GRCGYC	2 cut(s)	1867, 1957
BssSI	CACGAG	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	1168
Bst2BI	CACGAG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	2077
Bst4CI	ACNGT	6 cut(s)	11, 27, 948, 953, 1130, 1792
Bst6I	CTCTTC	4 cut(s)	97, 1247, 1830, 1995
BstACI	GRCGYC	2 cut(s)	1867, 1957
BstAFI	CTTAAG	2 cut(s)	203, 1153
BstAPI	GCANNNNNTGC	4 cut(s)	809, 930, 1339, 2129
BstBAI	YACGTR	1 cut(s)	1640
BstC8I	GCNNGC	5 cut(s)	681, 837, 899, 1936, 2038
BstDEI	CTNAG	6 cut(s)	294, 573, 1101, 1460, 2133, 2172
BstF5I	GGATG	7 cut(s)	70, 164, 1011, 1344, 1429, 1534, 1941
BstFNI	CGCG	1 cut(s)	1416
BstH2I	RGCGCY	2 cut(s)	1870, 2142
BstHHI	GCGC	2 cut(s)	1869, 2141
BstKTI	GATC	8 cut(s)	221, 262, 364, 1239, 1393, 1459, 1612, 1753
BstMAI	GTCTC	2 cut(s)	39, 1178
BstMBI	GATC	8 cut(s)	218, 259, 361, 1236, 1390, 1456, 1609, 1750
BstNI	CCWGG	1 cut(s)	2077
BstNSI	RCATGY	1 cut(s)	897
BstPAI	GACNNNNGTC	1 cut(s)	205
BstSCI	CCNGG	5 cut(s)	31, 140, 558, 1192, 2075
BstSFI	CTRYAG	1 cut(s)	876
BstSLI	GKGCMC	2 cut(s)	1747, 2038
BstUI	CGCG	1 cut(s)	1416
BstV1I	GCAGC	3 cut(s)	796, 1918, 2071
BstX2I	RGATCY	5 cut(s)	259, 361, 1456, 1609, 1750
BstXI	CCANNNNNNTGG	1 cut(s)	662
BstYI	RGATCY	5 cut(s)	259, 361, 1456, 1609, 1750
Bsu36I	CCTNAGG	1 cut(s)	294
BsuI	GTATCC	2 cut(s)	39, 154
BsuRI	GGCC	2 cut(s)	695, 1167
BtgZI	GCGATG	1 cut(s)	1331
BtrI	CACGTC	1 cut(s)	21
BtsCI	GGATG	7 cut(s)	70, 164, 1011, 1344, 1429, 1534, 1941
BtsI	GCAGTG	2 cut(s)	1340, 1922
BtsIMutI	CAGTG	5 cut(s)	621, 1340, 1745, 1922, 2024
BveI	ACCTGC	3 cut(s)	794, 1873, 2021
Cac8I	GCNNGC	5 cut(s)	681, 837, 899, 1936, 2038
CaiI	CAGNNNCTG	1 cut(s)	809
CfoI	GCGC	2 cut(s)	1869, 2141
Cfr13I	GGNCC	1 cut(s)	993
CseI	GACGC	1 cut(s)	1946
Csp6I	GTAC	6 cut(s)	721, 912, 949, 1158, 1587, 1923
CspCI	CAANNNNNGTGG	2 cut(s)	1382, 1417
CviAII	CATG	6 cut(s)	339, 484, 894, 930, 1953, 1981
CviQI	GTAC	6 cut(s)	721, 912, 949, 1158, 1587, 1923
DdeI	CTNAG	6 cut(s)	294, 573, 1101, 1460, 2133, 2172
DinI	GGCGCC	1 cut(s)	1868
DpnI	GATC	8 cut(s)	220, 261, 363, 1238, 1392, 1458, 1611, 1752
DpnII	GATC	8 cut(s)	218, 259, 361, 1236, 1390, 1456, 1609, 1750
DraI	TTTAAA	1 cut(s)	172
DraIII	CACNNNGTG	1 cut(s)	2099
DriI	GACNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	1165
Eam1104I	CTCTTC	4 cut(s)	97, 1247, 1830, 1995
Eam1105I	GACNNNNNGTC	1 cut(s)	329
EarI	CTCTTC	4 cut(s)	97, 1247, 1830, 1995
Eco130I	CCWWGG	1 cut(s)	1168
Eco147I	AGGCCT	1 cut(s)	695
Eco24I	GRGCYC	1 cut(s)	194
Eco31I	GGTCTC	1 cut(s)	1178
Eco32I	GATATC	2 cut(s)	1009, 1471
Eco47I	GGWCC	1 cut(s)	993
Eco47III	AGCGCT	1 cut(s)	2140
Eco57I	CTGAAG	3 cut(s)	216, 276, 701
Eco81I	CCTNAGG	1 cut(s)	294
Eco88I	CYCGRG	2 cut(s)	525, 2142
EcoRII	CCWGG	1 cut(s)	2075
EcoRV	GATATC	2 cut(s)	1009, 1471
EcoT14I	CCWWGG	1 cut(s)	1168
EcoT22I	ATGCAT	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	194
EgeI	GGCGCC	1 cut(s)	1868
EheI	GGCGCC	1 cut(s)	1868
ErhI	CCWWGG	1 cut(s)	1168
FaeI	CATG	6 cut(s)	342, 487, 897, 933, 1956, 1984
FalI	AAGNNNNNCTT	2 cut(s)	566, 598
FatI	CATG	6 cut(s)	338, 483, 893, 929, 1952, 1980
FauI	CCCGC	2 cut(s)	1943, 2045
FbaI	TGATCA	1 cut(s)	1390
FblI	GTMKAC	2 cut(s)	1447, 1699
Fnu4HI	GCNGC	5 cut(s)	810, 1417, 1932, 1950, 2085
FokI	GGATG	7 cut(s)	77, 151, 998, 1351, 1436, 1541, 1928
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	5 cut(s)	810, 1417, 1932, 1950, 2085
FspBI	CTAG	4 cut(s)	840, 1182, 1220, 1761
GlaI	GCGC	2 cut(s)	1868, 2140
GluI	GCNGC	5 cut(s)	810, 1417, 1932, 1950, 2085
GsuI	CTGGAG	5 cut(s)	123, 476, 638, 684, 2059
HaeII	RGCGCY	2 cut(s)	1870, 2142
HaeIII	GGCC	2 cut(s)	695, 1167
HapII	CCGG	5 cut(s)	32, 142, 560, 1194, 1993
HgaI	GACGC	1 cut(s)	1946
HhaI	GCGC	2 cut(s)	1869, 2141
Hin1I	GRCGYC	2 cut(s)	1867, 1957
Hin1II	CATG	6 cut(s)	342, 487, 897, 933, 1956, 1984
Hin6I	GCGC	2 cut(s)	1867, 2139
HinP1I	GCGC	2 cut(s)	1867, 2139
HinfI	GANTC	7 cut(s)	74, 741, 982, 1062, 1311, 1325, 1444
HpaII	CCGG	5 cut(s)	32, 142, 560, 1194, 1993
HphI	GGTGA	2 cut(s)	554, 562
Hpy166II	GTNNAC	7 cut(s)	119, 545, 944, 1160, 1448, 1578, 1700
Hpy8I	GTNNAC	7 cut(s)	119, 545, 944, 1160, 1448, 1578, 1700
Hpy99I	CGWCG	1 cut(s)	1962
HpyCH4III	ACNGT	6 cut(s)	11, 27, 948, 953, 1130, 1792
HpyCH4IV	ACGT	2 cut(s)	20, 1639
HpyF3I	CTNAG	6 cut(s)	294, 573, 1101, 1460, 2133, 2172
HpySE526I	ACGT	2 cut(s)	20, 1639
Hsp92I	GRCGYC	2 cut(s)	1867, 1957
Hsp92II	CATG	6 cut(s)	342, 487, 897, 933, 1956, 1984
HspAI	GCGC	2 cut(s)	1867, 2139
KasI	GGCGCC	1 cut(s)	1866
Ksp22I	TGATCA	1 cut(s)	1390
Kzo9I	GATC	8 cut(s)	218, 259, 361, 1236, 1390, 1456, 1609, 1750
LguI	GCTCTTC	1 cut(s)	1830
LmnI	GCTCC	5 cut(s)	154, 520, 1372, 1729, 1984
Lsp1109I	GCAGC	3 cut(s)	796, 1918, 2071
LweI	GCATC	7 cut(s)	407, 454, 1329, 1489, 1534, 1614, 2185
MaeI	CTAG	4 cut(s)	840, 1182, 1220, 1761
MaeII	ACGT	2 cut(s)	20, 1639
MaeIII	GTNAC	4 cut(s)	21, 1124, 1143, 1657
MalI	GATC	8 cut(s)	220, 261, 363, 1238, 1392, 1458, 1611, 1752
MboI	GATC	8 cut(s)	218, 259, 361, 1236, 1390, 1456, 1609, 1750
MflI	RGATCY	5 cut(s)	259, 361, 1456, 1609, 1750
MhlI	GDGCHC	6 cut(s)	151, 194, 681, 1747, 2038, 2134
MlsI	TGGCCA	1 cut(s)	1167
MluCI	AATT	7 cut(s)	302, 403, 1021, 1089, 1432, 1844, 2156
MluNI	TGGCCA	1 cut(s)	1167
Mly113I	GGCGCC	1 cut(s)	1867
MlyI	GAGTC	4 cut(s)	68, 750, 1320, 1453
MmeI	TCCRAC	1 cut(s)	1386
Mox20I	TGGCCA	1 cut(s)	1167
Mph1103I	ATGCAT	1 cut(s)	400
MroXI	GAANNNNTTC	1 cut(s)	1093
MscI	TGGCCA	1 cut(s)	1167
MseI	TTAA	6 cut(s)	123, 171, 204, 264, 390, 1154
MslI	CAYNNNNRTG	1 cut(s)	1915
Msp20I	TGGCCA	1 cut(s)	1167
MspA1I	CMGCKG	2 cut(s)	658, 776
MspCI	CTTAAG	2 cut(s)	203, 1153
MspI	CCGG	5 cut(s)	32, 142, 560, 1194, 1993
MspR9I	CCNGG	5 cut(s)	33, 142, 560, 1194, 2077
Mva1269I	GAATGC	1 cut(s)	2125
MvaI	CCWGG	1 cut(s)	2077
MvnI	CGCG	1 cut(s)	1416
NarI	GGCGCC	1 cut(s)	1867
NciI	CCSGG	4 cut(s)	33, 142, 560, 1194
NdeII	GATC	8 cut(s)	218, 259, 361, 1236, 1390, 1456, 1609, 1750
NlaIII	CATG	6 cut(s)	342, 487, 897, 933, 1956, 1984
NlaIV	GGNNCC	6 cut(s)	363, 1509, 1752, 1868, 2035, 2059
NmuCI	GTSAC	1 cut(s)	21
NsiI	ATGCAT	1 cut(s)	400
NspI	RCATGY	1 cut(s)	897
OliI	CACNNNNGTG	1 cut(s)	1915
PaeR7I	CTCGAG	1 cut(s)	2142
PaqCI	CACCTGC	2 cut(s)	794, 2021
PceI	AGGCCT	1 cut(s)	695
PciSI	GCTCTTC	1 cut(s)	1830
PctI	GAATGC	1 cut(s)	2125
PdmI	GAANNNNTTC	1 cut(s)	1093
PfeI	GAWTC	3 cut(s)	982, 1062, 1325
PflFI	GACNNNGTC	1 cut(s)	991
PfoI	TCCNGGA	2 cut(s)	31, 1192
PkrI	GCNGC	5 cut(s)	811, 1418, 1933, 1951, 2086
PleI	GAGTC	4 cut(s)	68, 749, 1319, 1452
PluTI	GGCGCC	1 cut(s)	1870
PpsI	GAGTC	4 cut(s)	68, 749, 1319, 1452
Ppu21I	YACGTR	1 cut(s)	1640
PshAI	GACNNNNGTC	1 cut(s)	205
PshBI	ATTAAT	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	2075
PspGI	CCWGG	1 cut(s)	2075
PspN4I	GGNNCC	6 cut(s)	363, 1509, 1752, 1868, 2035, 2059
PspPI	GGNCC	1 cut(s)	993
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	5 cut(s)	259, 361, 1456, 1609, 1750
PsyI	GACNNNGTC	1 cut(s)	991
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	6 cut(s)	722, 913, 950, 1159, 1588, 1924
RsaNI	GTAC	6 cut(s)	721, 912, 949, 1158, 1587, 1923
RseI	CAYNNNNRTG	1 cut(s)	1915
SapI	GCTCTTC	1 cut(s)	1830
SaqAI	TTAA	6 cut(s)	123, 171, 204, 264, 390, 1154
SatI	GCNGC	5 cut(s)	810, 1417, 1932, 1950, 2085
Sau3AI	GATC	8 cut(s)	218, 259, 361, 1236, 1390, 1456, 1609, 1750
Sau96I	GGNCC	1 cut(s)	993
SchI	GAGTC	4 cut(s)	68, 750, 1320, 1453
ScrFI	CCNGG	5 cut(s)	33, 142, 560, 1194, 2077
SduI	GDGCHC	6 cut(s)	151, 194, 681, 1747, 2038, 2134
SfaNI	GCATC	7 cut(s)	407, 454, 1329, 1489, 1534, 1614, 2185
SfcI	CTRYAG	1 cut(s)	876
SfoI	GGCGCC	1 cut(s)	1868
Sfr274I	CTCGAG	1 cut(s)	2142
SinI	GGWCC	1 cut(s)	993
SlaI	CTCGAG	1 cut(s)	2142
SmiMI	CAYNNNNRTG	1 cut(s)	1915
SmlI	CTYRAG	5 cut(s)	203, 1153, 1298, 1649, 2142
SmoI	CTYRAG	5 cut(s)	203, 1153, 1298, 1649, 2142
Sse9I	AATT	7 cut(s)	302, 403, 1021, 1089, 1432, 1844, 2156
SseBI	AGGCCT	1 cut(s)	695
SsiI	CCGC	9 cut(s)	350, 658, 956, 1416, 1693, 1832, 1936, 1949, 2038
SspDI	GGCGCC	1 cut(s)	1866
SspI	AATATT	3 cut(s)	127, 1049, 1121
SspMI	CTAG	4 cut(s)	840, 1182, 1220, 1761
StuI	AGGCCT	1 cut(s)	695
StyD4I	CCNGG	5 cut(s)	31, 140, 558, 1192, 2075
StyI	CCWWGG	1 cut(s)	1168
TaaI	ACNGT	6 cut(s)	11, 27, 948, 953, 1130, 1792
TaiI	ACGT	2 cut(s)	23, 1642
TaqI	TCGA	7 cut(s)	79, 217, 739, 1294, 1600, 2110, 2143
TaqII	GACCGA	1 cut(s)	435
TasI	AATT	7 cut(s)	302, 403, 1021, 1089, 1432, 1844, 2156
TatI	WGTACW	4 cut(s)	720, 911, 948, 1157
TauI	GCSGC	2 cut(s)	1419, 1952
TfiI	GAWTC	3 cut(s)	982, 1062, 1325
Tru1I	TTAA	6 cut(s)	123, 171, 204, 264, 390, 1154
Tru9I	TTAA	6 cut(s)	123, 171, 204, 264, 390, 1154
TscAI	CASTG	5 cut(s)	621, 1340, 1752, 1922, 2031
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	3 cut(s)	809, 1931, 2084
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	7 cut(s)	586, 1086, 1099, 1767, 1862, 1930, 2096
TspRI	CASTG	5 cut(s)	621, 1340, 1752, 1922, 2031
Tth111I	GACNNNGTC	1 cut(s)	991
Vha464I	CTTAAG	2 cut(s)	203, 1153
VpaK11BI	GGWCC	1 cut(s)	993
VspI	ATTAAT	1 cut(s)	390
XapI	RAATTY	3 cut(s)	302, 1432, 1844
XceI	RCATGY	1 cut(s)	897
XhoI	CTCGAG	1 cut(s)	2142
XmiI	GTMKAC	2 cut(s)	1447, 1699
XmnI	GAANNNNTTC	1 cut(s)	1093
XspI	CTAG	4 cut(s)	840, 1182, 1220, 1761
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.