pycom15g13600

cyclic nucleotide-gated ion channel

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
9243517 .. 9246158
2642 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g13600.1

Sequence Viewer

Length: 1398 bp
ATGTTGGATTGTGGTTACAACAAGTCACAGTACGTGGGAGGCCAGAGAGACAAGTTTGTGAGGCTGGATGACTTGGACTCTAGATTGTCATCGCCTTCTGATTCTGGAGGGAGAAGATGTGGGTTTAATATTGAGGGACTAACCCGGACTGCTCCTGCAAGGGATACATCTTTTAAGAGAGGAATGAAAAAGGGGTCTGAAGGTCTTAAGTCAATCGGCCGATCACTTGGATTTGGGATTTCTCGTGCAGTGTTCCCTGAAGATCTTAAAGGGTCAGACAAGAAGATATATGATCCTCAGGACAAATTTCTCTTGTTGTGGAATAGATTTTTTGTCATCTCATGTATTCTGGCAGTGTCTGTGGACCCTCTGTTTTTCTATCTTCCAGTCATCAATAGTTCATCAAATTGTCTTGGTATAGATCGAAGGTTGGCTATCACAGCAACCACACTGCGGATGATTGTTGATGCTTTCTATCTTATTCACATGGCCCTCCAGTTTAGAACAGCTTACATTGCTCCATCATCTCGGGTTTTTGGAAGAGGTGAACTGGTGATTGATCCAGCACGAATAGCCAAGCGATACTTACGAAGTTATTTCATCATTGATTTTCTTTCAGTGCTACCCCTACCACAGATTGTAGTTTGGAGGTTTCTTCAGAGGTCCAAAGGTTCAGATGTGCTTGCTACAAAACAGGCTTTGCTTTTCATAGTTTTATTTCAGTATATTCCCAGACTTTTTCGAGTCTATCCTTTGACTTCAGAACTGAAAAGAACAGCTGGCGTCTTTGCTGAAACTGCTTGGGCAGGTGCTGCATACTATTTGCTATTATATATGCTCGCTAGTCATATAGTTGGGGCATTCTGGTATTTGTTAGCTTTAGAACGCAATGATACATGCTGGCAGATGGCTTGTACTGATATTGGAAAACCATGTGATAAAACTCTCTTGTACTGCGGGAACCAAAACAATTTAGATAATGCAACTTGGTCCAATGTTACTGGAAACATCCTATCAAAATGCTCGGCAGATGACAATAATACCTACTTTGATTTTGGAATCTTTAATTCGGCTTTATCATCTGGGGTTGTTTCATCCAAGAAGTTCATTGTCAAGTACTGTTACTGTTTATGGTGGGGACTACAGAATTTAAGTACGCTTGGTCAGGGTCTTGCAACCAGCACCTATCCTGGAGAGGTTATATTTTCCATATCACTGGCTATATTTGGACTTATCCTCTTCGCACTTTTGATAGGAAACATGCAGACCTATCTTCAGTCTCTTACTATTCGACTTGAGGAGATGAGGGTCAAAAGACGCGATTCAGAGCAGTGGATGCATCACCGCTTGCTCCCACAAGACCTTAGGGAACGCGTCAGGCGATATCGATCAATATAA

Protein Analysis

466

Amino Acids

52.85

Weight (kDa)

9.48

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 106 - 430 3.3e-23 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 797
Acc36I ACCTGC 1 cut(s) 797
AccII CGCG 2 cut(s) 1320, 1374
AciI CCGC 3 cut(s) 454, 957, 1345
AclWI GGATC 2 cut(s) 287, 554
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 2 cut(s) 305, 1147
AcuI CTGAAG 5 cut(s) 219, 279, 641, 744, 1259
AcyI GRCGYC 1 cut(s) 783
AfaI GTAC 5 cut(s) 32, 916, 953, 1118, 1156
AfiI CCNNNNNNNGG 1 cut(s) 453
AflII CTTAAG 1 cut(s) 206
AflIII ACRYGT 1 cut(s) 1372
AjnI CCWGG 1 cut(s) 1189
AluBI AGCT 3 cut(s) 509, 779, 878
AluI AGCT 3 cut(s) 509, 779, 878
Alw26I GTCTC 2 cut(s) 42, 1284
AlwI GGATC 2 cut(s) 287, 554
AlwNI CAGNNNCTG 2 cut(s) 359, 812
Ama87I CYCGRG 1 cut(s) 528
AoxI GGCC 3 cut(s) 40, 217, 489
ApeKI GCWGC 1 cut(s) 812
ApoI RAATTY 2 cut(s) 305, 1147
AspS9I GGNCC 4 cut(s) 364, 490, 663, 990
AsuC2I CCSGG 1 cut(s) 145
AsuHPI GGTGA 3 cut(s) 557, 565, 1334
AvaI CYCGRG 1 cut(s) 528
AvaII GGWCC 3 cut(s) 364, 663, 990
AxyI CCTNAGG 2 cut(s) 297, 1364
BauI CACGAG 1 cut(s) 243
BbvI GCAGC 1 cut(s) 799
BccI CCATC 2 cut(s) 529, 901
BciT130I CCWGG 1 cut(s) 1191
BciVI GTATCC 1 cut(s) 157
BcnI CCSGG 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 42, 1284
BfaI CTAG 2 cut(s) 81, 843
BfmI CTRYAG 1 cut(s) 1142
BfrI CTTAAG 1 cut(s) 206
BfuAI ACCTGC 1 cut(s) 797
BfuI GTATCC 1 cut(s) 157
BglII AGATCT 1 cut(s) 262
BisI GCNGC 1 cut(s) 813
BlsI GCNGC 1 cut(s) 814
BmcAI AGTACT 1 cut(s) 1118
Bme1390I CCNGG 2 cut(s) 145, 1191
Bme18I GGWCC 3 cut(s) 364, 663, 990
BmeT110I CYCGRG 1 cut(s) 528
BmgT120I GGNCC 4 cut(s) 364, 490, 663, 990
BmiI GGNNCC 2 cut(s) 366, 962
BmrFI CCNGG 2 cut(s) 145, 1191
BmsI GCATC 3 cut(s) 457, 1326, 1348
BpmI CTGGAG 3 cut(s) 126, 479, 1212
BpuEI CTTGAG 1 cut(s) 1316
BpuMI CCSGG 1 cut(s) 145
Bsa29I ATCGAT 1 cut(s) 1387
BsaAI YACGTR 1 cut(s) 34
BsaBI GATNNNNATC 2 cut(s) 88, 1387
BsaHI GRCGYC 1 cut(s) 783
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 453
Bse1I ACTGG 5 cut(s) 386, 496, 555, 1006, 1221
Bse21I CCTNAGG 2 cut(s) 297, 1364
Bse3DI GCAATG 2 cut(s) 513, 895
Bse8I GATNNNNATC 2 cut(s) 88, 1387
BseBI CCWGG 1 cut(s) 1191
BseCI ATCGAT 1 cut(s) 1387
BseGI GGATG 5 cut(s) 73, 462, 1008, 1094, 1341
BseJI GATNNNNATC 2 cut(s) 88, 1387
BseLI CCNNNNNNNGG 1 cut(s) 453
BseMI GCAATG 2 cut(s) 513, 895
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 5 cut(s) 386, 496, 555, 1006, 1221
BseRI GAGGAG 1 cut(s) 1313
BseX3I CGGCCG 1 cut(s) 217
BseXI GCAGC 1 cut(s) 799
BsgI GTGCAG 1 cut(s) 267
Bsh1236I CGCG 2 cut(s) 1320, 1374
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 3 cut(s) 42, 219, 491
BshVI ATCGAT 1 cut(s) 1387
BsiEI CGRYCG 1 cut(s) 220
BsiHKCI CYCGRG 1 cut(s) 528
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 2 cut(s) 150, 1152
BslI CCNNNNNNNGG 1 cut(s) 453
BsmAI GTCTC 2 cut(s) 42, 1284
BsmFI GGGAC 2 cut(s) 150, 1152
BsmI GAATGC 1 cut(s) 860
BsnI GGCC 3 cut(s) 42, 219, 491
BsoBI CYCGRG 1 cut(s) 528
Bsp143I GATC 6 cut(s) 221, 262, 292, 421, 559, 1388
BspACI CCGC 3 cut(s) 454, 957, 1345
BspANI GGCC 3 cut(s) 42, 219, 491
BspCNI CTCAG 1 cut(s) 310
BspDI ATCGAT 1 cut(s) 1387
BspFNI CGCG 2 cut(s) 1320, 1374
BspLI GGNNCC 2 cut(s) 366, 962
BspMI ACCTGC 1 cut(s) 797
BspPI GGATC 2 cut(s) 287, 554
BspTI CTTAAG 1 cut(s) 206
BsrDI GCAATG 2 cut(s) 513, 895
BsrI ACTGG 5 cut(s) 386, 496, 555, 1006, 1221
BssMI GATC 6 cut(s) 221, 262, 292, 421, 559, 1388
BssNI GRCGYC 1 cut(s) 783
BssSI CACGAG 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 1191
Bst4CI ACNGT 3 cut(s) 30, 1121, 1127
Bst6I CTCTTC 2 cut(s) 535, 1244
BstACI GRCGYC 1 cut(s) 783
BstAFI CTTAAG 1 cut(s) 206
BstAPI GCANNNNNTGC 2 cut(s) 812, 1336
BstBAI YACGTR 1 cut(s) 34
BstC8I GCNNGC 5 cut(s) 684, 781, 840, 902, 1349
BstDEI CTNAG 2 cut(s) 297, 1364
BstF5I GGATG 5 cut(s) 73, 462, 1008, 1094, 1341
BstFNI CGCG 2 cut(s) 1320, 1374
BstKTI GATC 6 cut(s) 224, 265, 295, 424, 562, 1391
BstMAI GTCTC 2 cut(s) 42, 1284
BstMBI GATC 6 cut(s) 221, 262, 292, 421, 559, 1388
BstMCI CGRYCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 6 cut(s) 440, 515, 572, 797, 812, 1336
BstNI CCWGG 1 cut(s) 1191
BstNSI RCATGY 2 cut(s) 900, 1264
BstSCI CCNGG 2 cut(s) 143, 1189
BstSFI CTRYAG 1 cut(s) 1142
BstUI CGCG 2 cut(s) 1320, 1374
BstV1I GCAGC 1 cut(s) 799
BstX2I RGATCY 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 1216
BstYI RGATCY 1 cut(s) 262
BstZI CGGCCG 1 cut(s) 217
Bsu15I ATCGAT 1 cut(s) 1387
Bsu36I CCTNAGG 2 cut(s) 297, 1364
BsuI GTATCC 1 cut(s) 157
BsuRI GGCC 3 cut(s) 42, 219, 491
BsuTUI ATCGAT 1 cut(s) 1387
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 5 cut(s) 73, 462, 1008, 1094, 1341
BtsI GCAGTG 4 cut(s) 255, 360, 449, 1337
BtsIMutI CAGTG 6 cut(s) 255, 360, 449, 624, 1214, 1337
BveI ACCTGC 1 cut(s) 797
Cac8I GCNNGC 5 cut(s) 684, 781, 840, 902, 1349
CaiI CAGNNNCTG 2 cut(s) 359, 812
Cfr13I GGNCC 4 cut(s) 364, 490, 663, 990
ClaI ATCGAT 1 cut(s) 1387
CseI GACGC 3 cut(s) 772, 1326, 1363
Csp6I GTAC 5 cut(s) 31, 915, 952, 1117, 1155
CviAII CATG 5 cut(s) 342, 487, 897, 933, 1261
CviQI GTAC 5 cut(s) 31, 915, 952, 1117, 1155
DdeI CTNAG 2 cut(s) 297, 1364
DpnI GATC 6 cut(s) 223, 264, 294, 423, 561, 1390
DpnII GATC 6 cut(s) 221, 262, 292, 421, 559, 1388
EaeI YGGCCR 1 cut(s) 217
EagI CGGCCG 1 cut(s) 217
Eam1104I CTCTTC 2 cut(s) 535, 1244
EarI CTCTTC 2 cut(s) 535, 1244
EclXI CGGCCG 1 cut(s) 217
Eco32I GATATC 1 cut(s) 1385
Eco47I GGWCC 3 cut(s) 364, 663, 990
Eco52I CGGCCG 1 cut(s) 217
Eco57I CTGAAG 5 cut(s) 219, 279, 641, 744, 1259
Eco81I CCTNAGG 2 cut(s) 297, 1364
Eco88I CYCGRG 1 cut(s) 528
EcoRII CCWGG 1 cut(s) 1189
EcoRV GATATC 1 cut(s) 1385
EcoT22I ATGCAT 1 cut(s) 1341
FaeI CATG 5 cut(s) 345, 490, 900, 936, 1264
FalI AAGNNNNNCTT 2 cut(s) 569, 601
FaqI GGGAC 2 cut(s) 150, 1152
FatI CATG 5 cut(s) 341, 486, 896, 932, 1260
FauI CCCGC 1 cut(s) 950
Fnu4HI GCNGC 1 cut(s) 813
FokI GGATG 5 cut(s) 80, 469, 995, 1081, 1348
Fsp4HI GCNGC 1 cut(s) 813
FspBI CTAG 2 cut(s) 81, 843
GluI GCNGC 1 cut(s) 813
GsuI CTGGAG 3 cut(s) 126, 479, 1212
HaeIII GGCC 3 cut(s) 42, 219, 491
HapII CCGG 1 cut(s) 145
HgaI GACGC 3 cut(s) 772, 1326, 1363
Hin1I GRCGYC 1 cut(s) 783
Hin1II CATG 5 cut(s) 345, 490, 900, 936, 1264
HinfI GANTC 5 cut(s) 77, 101, 744, 1059, 1322
HpaII CCGG 1 cut(s) 145
HphI GGTGA 3 cut(s) 557, 565, 1334
Hpy166II GTNNAC 2 cut(s) 364, 548
Hpy188I TCNGA 7 cut(s) 100, 199, 277, 660, 676, 763, 1327
Hpy188III TCNNGA 3 cut(s) 81, 105, 299
Hpy8I GTNNAC 2 cut(s) 364, 548
HpyAV CCTTC 3 cut(s) 105, 194, 420
HpyCH4III ACNGT 3 cut(s) 30, 1121, 1127
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 7 cut(s) 158, 248, 815, 983, 1175, 1264, 1339
HpyF10VI GCNNNNNNNGC 6 cut(s) 440, 515, 572, 797, 812, 1336
HpyF3I CTNAG 2 cut(s) 297, 1364
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 783
Hsp92II CATG 5 cut(s) 345, 490, 900, 936, 1264
Kzo9I GATC 6 cut(s) 221, 262, 292, 421, 559, 1388
LmnI GCTCC 3 cut(s) 157, 523, 1356
Lsp1109I GCAGC 1 cut(s) 799
LweI GCATC 3 cut(s) 457, 1326, 1348
MaeI CTAG 2 cut(s) 81, 843
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 4 cut(s) 14, 24, 997, 1121
MalI GATC 6 cut(s) 223, 264, 294, 423, 561, 1390
MboI GATC 6 cut(s) 221, 262, 292, 421, 559, 1388
MboII GAAGA 8 cut(s) 126, 272, 295, 374, 552, 647, 1231, 1265
MflI RGATCY 1 cut(s) 262
MluCI AATT 5 cut(s) 305, 406, 970, 1066, 1147
MluI ACGCGT 1 cut(s) 1372
MlyI GAGTC 2 cut(s) 71, 753
Mph1103I ATGCAT 1 cut(s) 1341
MseI TTAA 6 cut(s) 126, 174, 207, 267, 1065, 1151
MspA1I CMGCKG 1 cut(s) 779
MspCI CTTAAG 1 cut(s) 206
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 2 cut(s) 145, 1191
Mva1269I GAATGC 1 cut(s) 860
MvaI CCWGG 1 cut(s) 1191
MvnI CGCG 2 cut(s) 1320, 1374
MwoI GCNNNNNNNGC 6 cut(s) 440, 515, 572, 797, 812, 1336
NciI CCSGG 1 cut(s) 145
NdeII GATC 6 cut(s) 221, 262, 292, 421, 559, 1388
NlaIII CATG 5 cut(s) 345, 490, 900, 936, 1264
NlaIV GGNNCC 2 cut(s) 366, 962
NmeAIII GCCGAG 1 cut(s) 1004
NmuCI GTSAC 1 cut(s) 24
NsiI ATGCAT 1 cut(s) 1341
NspI RCATGY 2 cut(s) 900, 1264
PaqCI CACCTGC 1 cut(s) 797
PcsI WCGNNNNNNNCGW 1 cut(s) 1378
PctI GAATGC 1 cut(s) 860
PfeI GAWTC 3 cut(s) 101, 1059, 1322
PfoI TCCNGGA 1 cut(s) 1189
PkrI GCNGC 1 cut(s) 814
PleI GAGTC 2 cut(s) 71, 752
PpsI GAGTC 2 cut(s) 71, 752
Ppu21I YACGTR 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 1189
PspGI CCWGG 1 cut(s) 1189
PspN4I GGNNCC 2 cut(s) 366, 962
PspPI GGNCC 4 cut(s) 364, 490, 663, 990
PstNI CAGNNNCTG 2 cut(s) 359, 812
PsuI RGATCY 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 779
RsaI GTAC 5 cut(s) 32, 916, 953, 1118, 1156
RsaNI GTAC 5 cut(s) 31, 915, 952, 1117, 1155
SaqAI TTAA 6 cut(s) 126, 174, 207, 267, 1065, 1151
SatI GCNGC 1 cut(s) 813
Sau3AI GATC 6 cut(s) 221, 262, 292, 421, 559, 1388
Sau96I GGNCC 4 cut(s) 364, 490, 663, 990
ScaI AGTACT 1 cut(s) 1118
SchI GAGTC 2 cut(s) 71, 753
ScrFI CCNGG 2 cut(s) 145, 1191
SfaNI GCATC 3 cut(s) 457, 1326, 1348
SfcI CTRYAG 1 cut(s) 1142
SinI GGWCC 3 cut(s) 364, 663, 990
SmlI CTYRAG 2 cut(s) 206, 1295
SmoI CTYRAG 2 cut(s) 206, 1295
Sse9I AATT 5 cut(s) 305, 406, 970, 1066, 1147
SsiI CCGC 3 cut(s) 454, 957, 1345
SspI AATATT 1 cut(s) 130
SspMI CTAG 2 cut(s) 81, 843
StyD4I CCNGG 2 cut(s) 143, 1189
TaaI ACNGT 3 cut(s) 30, 1121, 1127
TaiI ACGT 1 cut(s) 36
TaqI TCGA 4 cut(s) 424, 742, 1291, 1387
TasI AATT 5 cut(s) 305, 406, 970, 1066, 1147
TatI WGTACW 3 cut(s) 914, 951, 1116
TfiI GAWTC 3 cut(s) 101, 1059, 1322
Tru1I TTAA 6 cut(s) 126, 174, 207, 267, 1065, 1151
Tru9I TTAA 6 cut(s) 126, 174, 207, 267, 1065, 1151
TscAI CASTG 6 cut(s) 255, 360, 456, 624, 1221, 1337
TseFI GTSAC 1 cut(s) 24
TseI GCWGC 1 cut(s) 812
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 6 cut(s) 200, 390, 589, 697, 1083, 1096
TspRI CASTG 6 cut(s) 255, 360, 456, 624, 1221, 1337
Vha464I CTTAAG 1 cut(s) 206
VpaK11BI GGWCC 3 cut(s) 364, 663, 990
XapI RAATTY 2 cut(s) 305, 1147
XbaI TCTAGA 1 cut(s) 80
XceI RCATGY 2 cut(s) 900, 1264
XspI CTAG 2 cut(s) 81, 843
ZrmI AGTACT 1 cut(s) 1118
Zsp2I ATGCAT 1 cut(s) 1341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.