pycom02g00610

cyclic nucleotide-gated ion channel

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
341988 .. 344797
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g00610.3

Sequence Viewer

Length: 1554 bp
ATGTTGGATTGTGGTTACAACAAGTCACAGTACTTGGGAGGCCAGAGAGACAAGTTTGTTAGGTTAGATGACCTGGACTGTAGATTATCATCACCTTCTGATTCAGGAGGTAGAAGTTGTGGGTTTAATATTGAACTAACAAGGACTGCTCCTGCGAGGGATACATCTTTTAAAAGAGGAATGAAAAAGGGGTCTGAAGGACTTAAGTCAATTGGCCGATCACTTGGATTTGGGATCTCTCGTGCAGTATTCTCTGAAGATCTTAAGGGGTCAGACAAGAAGATATATGATCCTCAGGACAAATTTCTTCTGCTGTGGAATAAATTTTTTGTCATCTCATGTATTCTGGCTGTATCTGTGGACCCTCTGTTTTTCTATCTTCCAGTCATCAATACTTCATCAACATGTCTTGGCATAGATCGAAGGTTGGCTATCATAGCGACCACATTGCGGATGATTGTTGATGCTTTCTATCTTATTCACATGGCTCTCCAGTTCAGGACAGCTTACATTGCTCCATCTTCTCGGGTTTTTGGAAGAGGTGAACTGGTGATTGATCCAGCACGAATAGCCAAGCGATACTTACGAAGTTATTTCATCATTGATTTTCTTTCAGTGCTACCCCTACCACAGATTGTTGTTTGGAGGTTTCTTCAGAGGTCCAAAAGTTCAGATGTGCTTGCTACAAAACAGGCTTTGCTTTTCATAGTTTTATTTCAGTATATTCCCAGACTTCTTCGAGTCCATCCTTTGACTTCAGAACTGAAAAGAACAGCTGGCGTCTTTGCTGAAACTGCTTGGGAAGGCGCTGCATACTATTTGCTATTATATATGCTCGCTAGTCATATAGTTGGGGCATTTTGGTATTTGTTAGCCTTAGAACGCAATGACACATGTTGGCAGAAGGCTTGTACTGAAATTGGAAAATCATGTGATAAAAAAATCTTGTACTGCGGGAACCAATACATTGCAACTCGGTCCAATGTTACCGAAACCATCTTATCAAAATGCACGGCAGATGACCAGAATACGTTCTTTGATTTTGGAATCTACAATTCGGCTTTATCATCTGGGGTTGTTTCATCCAATAAGTTCATCGTCAAATACTGTTACTGTTTGTGGTGGGGACTACAGAATTTAAGTACACTTGGCCAGGGTCTTGCAACCAGCACCTATCCTGGAGAAGTTATATTTTCCATAGCACTGGCTATATTTGGACTGATCCTCTTTGCACTTTTGATAGGAAACATGCAGACCTATCTTCAATCTCTTACTATTCGACTTGAGGAGATGAGGGTCAAAAGACGTGATTCAGAGCAGTGGATGCATCACCGCTTGCTCCCACAAGACCTTAGGGAACGCGTCAGGCGATATGATCAATATAAGTGGTTGGAAACACGTGGCGTGGACGAGCAGAGTTTAGTTCAGAGTCTACCAAAGGATCTCAGGAGAGATATCAAGCGGCACCTCTGTTTGGCATTAGTGAGGAGGCGCAGGTTCCACTGTTTGAGAATATGGACGAGAGGTTGCTTGATGCCATTTGTGAGAGACTGA

Protein Analysis

518

Amino Acids

59.42

Weight (kDa)

9.53

Isoelectric Point (pI)

59.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1485
AccB1I GGYRCC 1 cut(s) 1464
AccI GTMKAC 1 cut(s) 1432
AccII CGCG 1 cut(s) 1362
AciI CCGC 4 cut(s) 451, 954, 1333, 1462
AclWI GGATC 5 cut(s) 242, 284, 551, 1216, 1449
AcoI YGGCCR 2 cut(s) 214, 1150
AcsI RAATTY 3 cut(s) 302, 323, 1135
AcuI CTGAAG 4 cut(s) 216, 276, 638, 741
AcvI CACGTG 1 cut(s) 1400
AcyI GRCGYC 1 cut(s) 780
AfaI GTAC 4 cut(s) 32, 913, 950, 1144
AfiI CCNNNNNNNGG 2 cut(s) 450, 1474
AflII CTTAAG 2 cut(s) 203, 263
AflIII ACRYGT 4 cut(s) 404, 893, 1360, 1397
AgsI TTSAA 2 cut(s) 134, 1265
AjiI CACGTC 1 cut(s) 1307
AjnI CCWGG 3 cut(s) 72, 1152, 1177
AluBI AGCT 2 cut(s) 506, 776
AluI AGCT 2 cut(s) 506, 776
Alw26I GTCTC 2 cut(s) 42, 1542
AlwI GGATC 5 cut(s) 242, 284, 551, 1216, 1449
Ama87I CYCGRG 1 cut(s) 525
AoxI GGCC 3 cut(s) 40, 214, 1150
ApeKI GCWGC 1 cut(s) 809
ApoI RAATTY 3 cut(s) 302, 323, 1135
Asp700I GAANNNNTTC 1 cut(s) 1031
AspLEI GCGC 2 cut(s) 809, 1494
AspS9I GGNCC 3 cut(s) 361, 660, 978
AsuHPI GGTGA 4 cut(s) 84, 554, 562, 1322
AvaI CYCGRG 1 cut(s) 525
AvaII GGWCC 3 cut(s) 361, 660, 978
AxyI CCTNAGG 2 cut(s) 294, 1352
BalI TGGCCA 1 cut(s) 1152
BanI GGYRCC 1 cut(s) 1464
BauI CACGAG 1 cut(s) 240
BbrPI CACGTG 1 cut(s) 1400
BbvI GCAGC 1 cut(s) 796
BccI CCATC 3 cut(s) 526, 753, 1004
BceAI ACGGC 1 cut(s) 1029
BcgI CGANNNNNNTGC 2 cut(s) 430, 464
BciT130I CCWGG 3 cut(s) 74, 1154, 1179
BciVI GTATCC 1 cut(s) 154
BclI TGATCA 1 cut(s) 1375
BcoDI GTCTC 2 cut(s) 42, 1542
BfaI CTAG 1 cut(s) 840
BfmI CTRYAG 2 cut(s) 79, 1130
BfoI RGCGCY 1 cut(s) 810
BfrI CTTAAG 2 cut(s) 203, 263
BfuAI ACCTGC 1 cut(s) 1485
BfuI GTATCC 1 cut(s) 154
BglII AGATCT 1 cut(s) 259
BisI GCNGC 2 cut(s) 810, 1463
BlsI GCNGC 2 cut(s) 811, 1464
BmcAI AGTACT 1 cut(s) 32
Bme1390I CCNGG 3 cut(s) 74, 1154, 1179
Bme18I GGWCC 3 cut(s) 361, 660, 978
BmeT110I CYCGRG 1 cut(s) 525
BmgBI CACGTC 1 cut(s) 1307
BmgT120I GGNCC 3 cut(s) 361, 660, 978
BmiI GGNNCC 4 cut(s) 363, 959, 1466, 1499
BmrFI CCNGG 3 cut(s) 74, 1154, 1179
BmsI GCATC 4 cut(s) 454, 1314, 1336, 1524
BoxI GACNNNNGTC 1 cut(s) 205
BpmI CTGGAG 2 cut(s) 476, 1200
BpuEI CTTGAG 1 cut(s) 1304
BsaAI YACGTR 1 cut(s) 1400
BsaBI GATNNNNATC 1 cut(s) 88
BsaHI GRCGYC 1 cut(s) 780
BsaJI CCNNGG 1 cut(s) 1153
Bsc4I CCNNNNNNNGG 2 cut(s) 450, 1474
Bse1I ACTGG 4 cut(s) 383, 493, 552, 1209
Bse21I CCTNAGG 2 cut(s) 294, 1352
Bse3DI GCAATG 4 cut(s) 446, 510, 892, 966
Bse8I GATNNNNATC 1 cut(s) 88
BseBI CCWGG 3 cut(s) 74, 1154, 1179
BseDI CCNNGG 1 cut(s) 1153
BseGI GGATG 4 cut(s) 459, 745, 1082, 1329
BseJI GATNNNNATC 1 cut(s) 88
BseLI CCNNNNNNNGG 2 cut(s) 450, 1474
BseMI GCAATG 4 cut(s) 446, 510, 892, 966
BseMII CTCAG 2 cut(s) 308, 1459
BseNI ACTGG 4 cut(s) 383, 493, 552, 1209
BseRI GAGGAG 2 cut(s) 1301, 1501
BseXI GCAGC 1 cut(s) 796
BsgI GTGCAG 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 1362
BshFI GGCC 3 cut(s) 42, 216, 1152
BshNI GGYRCC 1 cut(s) 1464
BsiHKCI CYCGRG 1 cut(s) 525
BslFI GGGAC 1 cut(s) 1140
BslI CCNNNNNNNGG 2 cut(s) 450, 1474
BsmAI GTCTC 2 cut(s) 42, 1542
BsmFI GGGAC 1 cut(s) 1140
BsnI GGCC 3 cut(s) 42, 216, 1152
BsoBI CYCGRG 1 cut(s) 525
Bsp143I GATC 9 cut(s) 218, 234, 259, 289, 418, 556, 1221, 1375, 1441
BspACI CCGC 4 cut(s) 451, 954, 1333, 1462
BspANI GGCC 3 cut(s) 42, 216, 1152
BspCNI CTCAG 2 cut(s) 307, 1458
BspFNI CGCG 1 cut(s) 1362
BspLI GGNNCC 4 cut(s) 363, 959, 1466, 1499
BspMI ACCTGC 1 cut(s) 1485
BspPI GGATC 5 cut(s) 242, 284, 551, 1216, 1449
BspT107I GGYRCC 1 cut(s) 1464
BspTI CTTAAG 2 cut(s) 203, 263
BsrDI GCAATG 4 cut(s) 446, 510, 892, 966
BsrI ACTGG 4 cut(s) 383, 493, 552, 1209
BssECI CCNNGG 1 cut(s) 1153
BssMI GATC 9 cut(s) 218, 234, 259, 289, 418, 556, 1221, 1375, 1441
BssNI GRCGYC 1 cut(s) 780
BssSI CACGAG 1 cut(s) 240
Bst2BI CACGAG 1 cut(s) 240
Bst2UI CCWGG 3 cut(s) 74, 1154, 1179
Bst4CI ACNGT 5 cut(s) 30, 80, 1109, 1115, 1505
Bst6I CTCTTC 1 cut(s) 532
BstACI GRCGYC 1 cut(s) 780
BstAFI CTTAAG 2 cut(s) 203, 263
BstAPI GCANNNNNTGC 1 cut(s) 1324
BstBAI YACGTR 1 cut(s) 1400
BstC8I GCNNGC 4 cut(s) 681, 778, 837, 1337
BstDEI CTNAG 4 cut(s) 294, 877, 1352, 1445
BstF5I GGATG 4 cut(s) 459, 745, 1082, 1329
BstFNI CGCG 1 cut(s) 1362
BstH2I RGCGCY 1 cut(s) 810
BstHHI GCGC 2 cut(s) 809, 1494
BstKTI GATC 9 cut(s) 221, 237, 262, 292, 421, 559, 1224, 1378, 1444
BstMAI GTCTC 2 cut(s) 42, 1542
BstMBI GATC 9 cut(s) 218, 234, 259, 289, 418, 556, 1221, 1375, 1441
BstMWI GCNNNNNNNGC 5 cut(s) 437, 512, 569, 794, 1324
BstNI CCWGG 3 cut(s) 74, 1154, 1179
BstNSI RCATGY 3 cut(s) 408, 897, 1252
BstPAI GACNNNNGTC 1 cut(s) 205
BstSCI CCNGG 3 cut(s) 72, 1152, 1177
BstSFI CTRYAG 2 cut(s) 79, 1130
BstUI CGCG 1 cut(s) 1362
BstV1I GCAGC 1 cut(s) 796
BstX2I RGATCY 3 cut(s) 234, 259, 1441
BstXI CCANNNNNNTGG 1 cut(s) 1204
BstYI RGATCY 3 cut(s) 234, 259, 1441
Bsu36I CCTNAGG 2 cut(s) 294, 1352
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 3 cut(s) 42, 216, 1152
BtrI CACGTC 1 cut(s) 1307
BtsCI GGATG 4 cut(s) 459, 745, 1082, 1329
BtsI GCAGTG 1 cut(s) 1325
BtsIMutI CAGTG 4 cut(s) 621, 1202, 1325, 1501
BveI ACCTGC 1 cut(s) 1485
Cac8I GCNNGC 4 cut(s) 681, 778, 837, 1337
CfoI GCGC 2 cut(s) 809, 1494
Cfr13I GGNCC 3 cut(s) 361, 660, 978
CseI GACGC 2 cut(s) 769, 1351
Csp6I GTAC 4 cut(s) 31, 912, 949, 1143
CspCI CAANNNNNGTGG 2 cut(s) 1367, 1402
CviAII CATG 6 cut(s) 339, 405, 484, 894, 930, 1249
CviQI GTAC 4 cut(s) 31, 912, 949, 1143
DdeI CTNAG 4 cut(s) 294, 877, 1352, 1445
DpnI GATC 9 cut(s) 220, 236, 261, 291, 420, 558, 1223, 1377, 1443
DpnII GATC 9 cut(s) 218, 234, 259, 289, 418, 556, 1221, 1375, 1441
DraI TTTAAA 1 cut(s) 172
EaeI YGGCCR 2 cut(s) 214, 1150
Eam1104I CTCTTC 1 cut(s) 532
EarI CTCTTC 1 cut(s) 532
Eco32I GATATC 1 cut(s) 1456
Eco47I GGWCC 3 cut(s) 361, 660, 978
Eco57I CTGAAG 4 cut(s) 216, 276, 638, 741
Eco72I CACGTG 1 cut(s) 1400
Eco81I CCTNAGG 2 cut(s) 294, 1352
Eco88I CYCGRG 1 cut(s) 525
EcoRII CCWGG 3 cut(s) 72, 1152, 1177
EcoRV GATATC 1 cut(s) 1456
EcoT22I ATGCAT 1 cut(s) 1329
FaeI CATG 6 cut(s) 342, 408, 487, 897, 933, 1252
FalI AAGNNNNNCTT 2 cut(s) 566, 598
FaqI GGGAC 1 cut(s) 1140
FatI CATG 6 cut(s) 338, 404, 483, 893, 929, 1248
FauI CCCGC 1 cut(s) 947
FbaI TGATCA 1 cut(s) 1375
FblI GTMKAC 1 cut(s) 1432
Fnu4HI GCNGC 2 cut(s) 810, 1463
FokI GGATG 4 cut(s) 466, 732, 1069, 1336
Fsp4HI GCNGC 2 cut(s) 810, 1463
FspBI CTAG 1 cut(s) 840
GlaI GCGC 2 cut(s) 808, 1493
GluI GCNGC 2 cut(s) 810, 1463
GsuI CTGGAG 2 cut(s) 476, 1200
HaeII RGCGCY 1 cut(s) 810
HaeIII GGCC 3 cut(s) 42, 216, 1152
HgaI GACGC 2 cut(s) 769, 1351
HhaI GCGC 2 cut(s) 809, 1494
Hin1I GRCGYC 1 cut(s) 780
Hin1II CATG 6 cut(s) 342, 408, 487, 897, 933, 1252
Hin6I GCGC 2 cut(s) 807, 1492
HinP1I GCGC 2 cut(s) 807, 1492
HinfI GANTC 5 cut(s) 101, 741, 1047, 1310, 1429
HphI GGTGA 4 cut(s) 84, 554, 562, 1322
Hpy166II GTNNAC 5 cut(s) 361, 545, 1145, 1408, 1433
Hpy188I TCNGA 9 cut(s) 100, 196, 256, 274, 657, 673, 760, 1315, 1428
Hpy188III TCNNGA 4 cut(s) 105, 296, 499, 1447
Hpy8I GTNNAC 5 cut(s) 361, 545, 1145, 1408, 1433
HpyAV CCTTC 5 cut(s) 105, 191, 417, 797, 898
HpyCH4III ACNGT 5 cut(s) 30, 80, 1109, 1115, 1505
HpyCH4IV ACGT 3 cut(s) 1031, 1306, 1399
HpyCH4V TGCA 8 cut(s) 245, 812, 971, 1011, 1163, 1232, 1252, 1327
HpyF10VI GCNNNNNNNGC 5 cut(s) 437, 512, 569, 794, 1324
HpyF3I CTNAG 4 cut(s) 294, 877, 1352, 1445
HpySE526I ACGT 3 cut(s) 1031, 1306, 1399
Hsp92I GRCGYC 1 cut(s) 780
Hsp92II CATG 6 cut(s) 342, 408, 487, 897, 933, 1252
HspAI GCGC 2 cut(s) 807, 1492
Ksp22I TGATCA 1 cut(s) 1375
Kzo9I GATC 9 cut(s) 218, 234, 259, 289, 418, 556, 1221, 1375, 1441
LmnI GCTCC 3 cut(s) 154, 520, 1344
Lsp1109I GCAGC 1 cut(s) 796
LweI GCATC 4 cut(s) 454, 1314, 1336, 1524
MaeI CTAG 1 cut(s) 840
MaeII ACGT 3 cut(s) 1031, 1306, 1399
MaeIII GTNAC 4 cut(s) 14, 24, 985, 1109
MalI GATC 9 cut(s) 220, 236, 261, 291, 420, 558, 1223, 1377, 1443
MboI GATC 9 cut(s) 218, 234, 259, 289, 418, 556, 1221, 1375, 1441
MboII GAAGA 9 cut(s) 269, 292, 299, 371, 513, 549, 644, 728, 1253
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 3 cut(s) 234, 259, 1441
MlsI TGGCCA 1 cut(s) 1152
MluCI AATT 6 cut(s) 210, 302, 323, 918, 1054, 1135
MluI ACGCGT 1 cut(s) 1360
MluNI TGGCCA 1 cut(s) 1152
MlyI GAGTC 2 cut(s) 750, 1438
MmeI TCCRAC 1 cut(s) 1371
Mox20I TGGCCA 1 cut(s) 1152
Mph1103I ATGCAT 1 cut(s) 1329
MroXI GAANNNNTTC 1 cut(s) 1031
MscI TGGCCA 1 cut(s) 1152
MseI TTAA 5 cut(s) 126, 171, 204, 264, 1139
MslI CAYNNNNRTG 1 cut(s) 403
Msp20I TGGCCA 1 cut(s) 1152
MspA1I CMGCKG 1 cut(s) 776
MspCI CTTAAG 2 cut(s) 203, 263
MspR9I CCNGG 3 cut(s) 74, 1154, 1179
MunI CAATTG 1 cut(s) 210
MvaI CCWGG 3 cut(s) 74, 1154, 1179
MvnI CGCG 1 cut(s) 1362
MwoI GCNNNNNNNGC 5 cut(s) 437, 512, 569, 794, 1324
NdeII GATC 9 cut(s) 218, 234, 259, 289, 418, 556, 1221, 1375, 1441
NlaIII CATG 6 cut(s) 342, 408, 487, 897, 933, 1252
NlaIV GGNNCC 4 cut(s) 363, 959, 1466, 1499
NmuCI GTSAC 1 cut(s) 24
NsiI ATGCAT 1 cut(s) 1329
NspI RCATGY 3 cut(s) 408, 897, 1252
PciI ACATGT 2 cut(s) 404, 893
PcsI WCGNNNNNNNCGW 1 cut(s) 1366
PdmI GAANNNNTTC 1 cut(s) 1031
PfeI GAWTC 3 cut(s) 101, 1047, 1310
PfoI TCCNGGA 1 cut(s) 1177
PkrI GCNGC 2 cut(s) 811, 1464
PleI GAGTC 2 cut(s) 749, 1437
PmaCI CACGTG 1 cut(s) 1400
PmlI CACGTG 1 cut(s) 1400
PpsI GAGTC 2 cut(s) 749, 1437
Ppu21I YACGTR 1 cut(s) 1400
PscI ACATGT 2 cut(s) 404, 893
PshAI GACNNNNGTC 1 cut(s) 205
Psp6I CCWGG 3 cut(s) 72, 1152, 1177
PspCI CACGTG 1 cut(s) 1400
PspGI CCWGG 3 cut(s) 72, 1152, 1177
PspN4I GGNNCC 4 cut(s) 363, 959, 1466, 1499
PspPI GGNCC 3 cut(s) 361, 660, 978
PsuI RGATCY 3 cut(s) 234, 259, 1441
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 4 cut(s) 32, 913, 950, 1144
RsaNI GTAC 4 cut(s) 31, 912, 949, 1143
RseI CAYNNNNRTG 1 cut(s) 403
SaqAI TTAA 5 cut(s) 126, 171, 204, 264, 1139
SatI GCNGC 2 cut(s) 810, 1463
Sau3AI GATC 9 cut(s) 218, 234, 259, 289, 418, 556, 1221, 1375, 1441
Sau96I GGNCC 3 cut(s) 361, 660, 978
ScaI AGTACT 1 cut(s) 32
SchI GAGTC 2 cut(s) 750, 1438
ScrFI CCNGG 3 cut(s) 74, 1154, 1179
SfaNI GCATC 4 cut(s) 454, 1314, 1336, 1524
SfcI CTRYAG 2 cut(s) 79, 1130
SinI GGWCC 3 cut(s) 361, 660, 978
SmiMI CAYNNNNRTG 1 cut(s) 403
SmlI CTYRAG 3 cut(s) 203, 263, 1283
SmoI CTYRAG 3 cut(s) 203, 263, 1283
Sse9I AATT 6 cut(s) 210, 302, 323, 918, 1054, 1135
SsiI CCGC 4 cut(s) 451, 954, 1333, 1462
SspI AATATT 1 cut(s) 130
SspMI CTAG 1 cut(s) 840
StyD4I CCNGG 3 cut(s) 72, 1152, 1177
TaaI ACNGT 5 cut(s) 30, 80, 1109, 1115, 1505
TaiI ACGT 3 cut(s) 1034, 1309, 1402
TaqI TCGA 3 cut(s) 421, 739, 1279
TaqII GACCGA 1 cut(s) 966
TasI AATT 6 cut(s) 210, 302, 323, 918, 1054, 1135
TatI WGTACW 4 cut(s) 30, 911, 948, 1142
TauI GCSGC 1 cut(s) 1465
TfiI GAWTC 3 cut(s) 101, 1047, 1310
Tru1I TTAA 5 cut(s) 126, 171, 204, 264, 1139
Tru9I TTAA 5 cut(s) 126, 171, 204, 264, 1139
TscAI CASTG 4 cut(s) 621, 1209, 1325, 1508
TseFI GTSAC 1 cut(s) 24
TseI GCWGC 1 cut(s) 809
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 6 cut(s) 197, 387, 586, 694, 1071, 1084
TspRI CASTG 4 cut(s) 621, 1209, 1325, 1508
Vha464I CTTAAG 2 cut(s) 203, 263
VpaK11BI GGWCC 3 cut(s) 361, 660, 978
XapI RAATTY 3 cut(s) 302, 323, 1135
XceI RCATGY 3 cut(s) 408, 897, 1252
XmiI GTMKAC 1 cut(s) 1432
XmnI GAANNNNTTC 1 cut(s) 1031
XspI CTAG 1 cut(s) 840
ZrmI AGTACT 1 cut(s) 32
Zsp2I ATGCAT 1 cut(s) 1329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.