Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8217668.1

Orthogroup ID

OG0002170

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 562

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8217668.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atgtttgactgtggctacacgtcacagtatccgggagggcagagagacaagtttgtgaggctggatgacttggactctcgattatcgtcctcttctgatactggagtgagaaggtgtggacttaatattgaaggactgacccggagtgctccttcaagggatacatcctttaaaaaaggaatgagaaagggctctgaaggacttaagtccattggtcgatcacttggatttggtgtttctcgtgcagtattccctgaagatcttaaagtttcagacaagaagatatttgaccctcaggacaaatttctccttttttggaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005217 GO:0005221 GO:0005223 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042391 GO:0043855 GO:0044425 GO:0044459 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0099094

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

107

Amino Acids

11.96

Weight (kDa)

9.47

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT4G30560 AT4G30560 AT4G30560 AT4G30560 AT4G30560 AT5G57940 AT5G57940 AT5G57940
fragaria_vesca	FvH4_1g00870 FvH4_1g00870 FvH4_1g00870 FvH4_1g00870
malus_domestica	MD02G1007200.v1.1 MD15G1144500.v1.1
prunus_persica	Prupe.7G263200_v2.0.a1 Prupe.7G263200_v2.0.a1 Prupe.7G263200_v2.0.a1 Prupe.7G263200_v2.0.a1
pyrus_communis	pycom02g00610 pycom02g00620 pycom15g13600 pycom15g13610
rosa_chinensis	RchiOBHm_Chr2g0085581
rosa_laevigata	RLG00000015703
rosa_multiflora	Rmu_co8217668.1_g000001 Rmu_ssc0000347.1_g000007
rosa_roxburghii	Rroxscaffold_2G00155250
rosa_rugosa	Rorug01G0461400
rosa_samantha	Rh2AG010500 Rh2BG011100 Rh2CG012000 Rh2DG013000
rosa_wichuraiana	Rw2G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	2 cut(s)	216, 276
AflII	CTTAAG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	131, 156
AjiI	CACGTC	1 cut(s)	21
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	39
ApoI	RAATTY	1 cut(s)	302
AsuC2I	CCSGG	2 cut(s)	33, 142
AxyI	CCTNAGG	1 cut(s)	294
BaeI	ACNNNNGTAYC	2 cut(s)	90, 123
BanII	GRGCYC	1 cut(s)	194
BauI	CACGAG	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	151
BciVI	GTATCC	2 cut(s)	39, 154
BcnI	CCSGG	2 cut(s)	33, 142
BcoDI	GTCTC	1 cut(s)	39
BfrI	CTTAAG	1 cut(s)	203
BfuI	GTATCC	2 cut(s)	39, 154
BglII	AGATCT	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	33, 142
BmgBI	CACGTC	1 cut(s)	21
BmrFI	CCNGG	2 cut(s)	33, 142
BoxI	GACNNNNGTC	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	123
BpuMI	CCSGG	2 cut(s)	33, 142
Bse1I	ACTGG	1 cut(s)	106
Bse21I	CCTNAGG	1 cut(s)	294
BseGI	GGATG	2 cut(s)	70, 164
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	32, 142
BsmAI	GTCTC	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	151, 194
Bsp143I	GATC	2 cut(s)	218, 259
BspCNI	CTCAG	1 cut(s)	307
BspTI	CTTAAG	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	106
BssMI	GATC	2 cut(s)	218, 259
BssSI	CACGAG	1 cut(s)	240
Bst2BI	CACGAG	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	11, 27
Bst6I	CTCTTC	1 cut(s)	97
BstAFI	CTTAAG	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	294
BstF5I	GGATG	2 cut(s)	70, 164
BstKTI	GATC	2 cut(s)	221, 262
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	2 cut(s)	218, 259
BstPAI	GACNNNNGTC	1 cut(s)	205
BstSCI	CCNGG	2 cut(s)	31, 140
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
Bsu36I	CCTNAGG	1 cut(s)	294
BsuI	GTATCC	2 cut(s)	39, 154
BtrI	CACGTC	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	70, 164
CviJI	RGCY	3 cut(s)	15, 61, 192
CviKI_1	RGCY	3 cut(s)	15, 61, 192
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	2 cut(s)	220, 261
DpnII	GATC	2 cut(s)	218, 259
DraI	TTTAAA	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	194
Eco57I	CTGAAG	2 cut(s)	216, 276
Eco81I	CCTNAGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	194
FokI	GGATG	2 cut(s)	77, 151
FriOI	GRGCYC	1 cut(s)	194
GsuI	CTGGAG	1 cut(s)	123
HapII	CCGG	2 cut(s)	32, 142
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	2 cut(s)	32, 142
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	3 cut(s)	97, 196, 274
Hpy188III	TCNNGA	2 cut(s)	78, 296
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	4 cut(s)	105, 125, 162, 191
HpyCH4III	ACNGT	2 cut(s)	11, 27
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	1 cut(s)	20
Kzo9I	GATC	2 cut(s)	218, 259
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	6 cut(s)	45, 47, 87, 155, 267, 281
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	2 cut(s)	220, 261
MboI	GATC	2 cut(s)	218, 259
MboII	GAAGA	3 cut(s)	84, 269, 292
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	151, 194
MluCI	AATT	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	4 cut(s)	29, 51, 100, 303
MseI	TTAA	4 cut(s)	123, 171, 204, 264
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	2 cut(s)	32, 142
MspR9I	CCNGG	2 cut(s)	33, 142
NciI	CCSGG	2 cut(s)	33, 142
NdeII	GATC	2 cut(s)	218, 259
NmuCI	GTSAC	1 cut(s)	21
PfoI	TCCNGGA	1 cut(s)	31
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PshAI	GACNNNNGTC	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	259
SaqAI	TTAA	4 cut(s)	123, 171, 204, 264
Sau3AI	GATC	2 cut(s)	218, 259
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	33, 142
SduI	GDGCHC	2 cut(s)	151, 194
SetI	ASST	2 cut(s)	23, 116
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	302
SspI	AATATT	1 cut(s)	127
StyD4I	CCNGG	2 cut(s)	31, 140
TaaI	ACNGT	2 cut(s)	11, 27
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	2 cut(s)	79, 217
TasI	AATT	1 cut(s)	302
Tru1I	TTAA	4 cut(s)	123, 171, 204, 264
Tru9I	TTAA	4 cut(s)	123, 171, 204, 264
TseFI	GTSAC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	21
Vha464I	CTTAAG	1 cut(s)	203
XapI	RAATTY	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.