Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002170

Physical Location & Seq

Genomic Coordinates Forward (+)

91615998 .. 91621369

Gene Structure 5372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00155250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGATTGTTGATGCTTTCTTTCTTCTACACATGGCTCTCCAGTTTCGGACAGCCTACATTGCTCCATCATCTCGGGTTTTTGGACGAGGTGAACTGGTGATTGACCCGGCAAGAATAGCTAAGAGATACTTACGAGGTTATTTCATCATTGATTTTCTTTCAGTGCTACCTCTACCACAGATTGTAGTTTGGAGGTTTCTGCAGCGGTCTGGAGGTTCAGATGTGCTCGCTACAAAACAGGCTTTGCTTTTTATTATCTTGCTTCAGTACATTCCCAGACTTCTTCGAGTCTTGCCTCTAACCTCCGAACTGAAAAGAACAGCTGGTGTTTTTGCTGAAACTGCTTGGGCAGGTGCTGCATACTATTTGCTATTATACTTGCTCGCTAGTCATATTGTTGGGGCATTTTGGTATTTGTTAGCTGTAGAACGCAATGATACATGCTGGCAGAAGGCTTGTACTGACATTGGCAACTCATGCAATAAAAGTTTACTGTACTGTGCGGACGAGAAACTGCCACCTGATGTGAATCTGACTTGGTCCAAAGTTAGTGATATCATCCAGTCAAATTGCTCATCGGCTGATGACAATAAATATTTTGATTTTGGAATCTACCAACAGGCTTTATCATCTGGAATTGTTTCATCTAAGAAGTTCATCTCTAAATATTGTTACTGTTTATGGTGGGGGTTACAAAACTTAAGTACACTTGGCCAAGGGCTCTCAACTAGCACCTATCCTGGAGAGGTTTTATTTTCCATAGCACTAGCTATATTTGGATTGATCCTCTTCGCACTTCTGATAGGAAATATGCAGACCTACCTCCAATCTCTTACCATTCGACTTGAGGAGATGAGAGTCAAAAGGCGTGATTCAGAGCAGTGGATGCACCATCGCTTTACTCCCACAAGACCTTCGGGAGCGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005217 GO:0005221 GO:0005223 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042391 GO:0043855 GO:0044425 GO:0044459 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0099094

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

309

Amino Acids

35.01

Weight (kDa)

9.11

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	1 - 280	5.4e-25	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT4G30560 AT4G30560 AT4G30560 AT4G30560 AT4G30560 AT5G57940 AT5G57940 AT5G57940
fragaria_vesca	FvH4_1g00870 FvH4_1g00870 FvH4_1g00870 FvH4_1g00870
malus_domestica	MD02G1007200.v1.1 MD15G1144500.v1.1
prunus_persica	Prupe.7G263200_v2.0.a1 Prupe.7G263200_v2.0.a1 Prupe.7G263200_v2.0.a1 Prupe.7G263200_v2.0.a1
pyrus_communis	pycom02g00610 pycom02g00620 pycom15g13600 pycom15g13610
rosa_chinensis	RchiOBHm_Chr2g0085581
rosa_laevigata	RLG00000015703
rosa_multiflora	Rmu_co8217668.1_g000001 Rmu_ssc0000347.1_g000007
rosa_roxburghii	Rroxscaffold_2G00155250
rosa_rugosa	Rorug01G0461400
rosa_samantha	Rh2AG010500 Rh2BG011100 Rh2CG012000 Rh2DG013000
rosa_wichuraiana	Rw2G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	341
AciI	CCGC	2 cut(s)	205, 503
AclWI	GGATC	1 cut(s)	778
AcoI	YGGCCR	1 cut(s)	712
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	4 cut(s)	269, 460, 497, 706
AflII	CTTAAG	1 cut(s)	700
AjnI	CCWGG	1 cut(s)	739
AluBI	AGCT	4 cut(s)	119, 323, 422, 770
AluI	AGCT	4 cut(s)	119, 323, 422, 770
Alw21I	GWGCWC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	778
AlwNI	CAGNNNCTG	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	72
AoxI	GGCC	1 cut(s)	712
ApeKI	GCWGC	2 cut(s)	202, 356
Asp700I	GAANNNNTTC	1 cut(s)	640
AspS9I	GGNCC	1 cut(s)	540
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	101, 109
AvaI	CYCGRG	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	540
BalI	TGGCCA	1 cut(s)	714
BanII	GRGCYC	1 cut(s)	723
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	214, 343
BccI	CCATC	2 cut(s)	73, 900
BciT130I	CCWGG	1 cut(s)	741
BcnI	CCSGG	1 cut(s)	107
BfaI	CTAG	3 cut(s)	387, 729, 767
BfmI	CTRYAG	2 cut(s)	200, 423
BfrI	CTTAAG	1 cut(s)	700
BfuAI	ACCTGC	1 cut(s)	341
BisI	GCNGC	2 cut(s)	203, 357
BlsI	GCNGC	2 cut(s)	204, 358
Bme1390I	CCNGG	2 cut(s)	107, 741
Bme18I	GGWCC	1 cut(s)	540
BmeT110I	CYCGRG	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	540
BmrFI	CCNGG	2 cut(s)	107, 741
BmsI	GCATC	1 cut(s)	876
BpmI	CTGGAG	3 cut(s)	23, 231, 762
BpuEI	CTTGAG	1 cut(s)	866
BpuMI	CCSGG	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	528
BsaJI	CCNNGG	1 cut(s)	715
Bse1I	ACTGG	3 cut(s)	40, 99, 562
Bse3DI	GCAATG	2 cut(s)	57, 439
Bse8I	GATNNNNATC	1 cut(s)	528
BseBI	CCWGG	1 cut(s)	741
BseDI	CCNNGG	1 cut(s)	715
BseGI	GGATG	2 cut(s)	558, 891
BseJI	GATNNNNATC	1 cut(s)	528
BseMI	GCAATG	2 cut(s)	57, 439
BseNI	ACTGG	3 cut(s)	40, 99, 562
BseRI	GAGGAG	1 cut(s)	863
BseXI	GCAGC	2 cut(s)	214, 343
BshFI	GGCC	1 cut(s)	714
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	107
BsnI	GGCC	1 cut(s)	714
BsoBI	CYCGRG	1 cut(s)	72
Bsp1286I	GDGCHC	2 cut(s)	228, 723
Bsp143I	GATC	1 cut(s)	783
BspACI	CCGC	2 cut(s)	205, 503
BspANI	GGCC	1 cut(s)	714
BspMAI	CTGCAG	1 cut(s)	204
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	1 cut(s)	778
BspTI	CTTAAG	1 cut(s)	700
BsrDI	GCAATG	2 cut(s)	57, 439
BsrI	ACTGG	3 cut(s)	40, 99, 562
BssECI	CCNNGG	1 cut(s)	715
BssMI	GATC	1 cut(s)	783
BssT1I	CCWWGG	1 cut(s)	715
Bst2UI	CCWGG	1 cut(s)	741
Bst4CI	ACNGT	3 cut(s)	495, 500, 677
Bst6I	CTCTTC	1 cut(s)	794
BstAFI	CTTAAG	1 cut(s)	700
BstAPI	GCANNNNNTGC	3 cut(s)	356, 477, 886
BstC8I	GCNNGC	3 cut(s)	228, 384, 446
BstDEI	CTNAG	2 cut(s)	120, 648
BstF5I	GGATG	2 cut(s)	558, 891
BstKTI	GATC	1 cut(s)	786
BstMBI	GATC	1 cut(s)	783
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 116, 341, 356, 477, 886
BstNI	CCWGG	1 cut(s)	741
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	2 cut(s)	105, 739
BstSFI	CTRYAG	2 cut(s)	200, 423
BstV1I	GCAGC	2 cut(s)	214, 343
BsuRI	GGCC	1 cut(s)	714
BtgZI	GCGATG	1 cut(s)	878
BtsCI	GGATG	2 cut(s)	558, 891
BtsI	GCAGTG	1 cut(s)	887
BtsIMutI	CAGTG	2 cut(s)	168, 887
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	3 cut(s)	228, 384, 446
CaiI	CAGNNNCTG	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	540
Csp6I	GTAC	4 cut(s)	268, 459, 496, 705
CviAII	CATG	3 cut(s)	31, 441, 477
CviQI	GTAC	4 cut(s)	268, 459, 496, 705
DdeI	CTNAG	2 cut(s)	120, 648
DpnI	GATC	1 cut(s)	785
DpnII	GATC	1 cut(s)	783
EaeI	YGGCCR	1 cut(s)	712
Eam1104I	CTCTTC	1 cut(s)	794
EarI	CTCTTC	1 cut(s)	794
Eco130I	CCWWGG	1 cut(s)	715
Eco24I	GRGCYC	1 cut(s)	723
Eco32I	GATATC	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	540
Eco57I	CTGAAG	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	739
EcoRV	GATATC	1 cut(s)	556
EcoT14I	CCWWGG	1 cut(s)	715
EcoT38I	GRGCYC	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	715
FaeI	CATG	3 cut(s)	34, 444, 480
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FatI	CATG	3 cut(s)	30, 440, 476
Fnu4HI	GCNGC	2 cut(s)	203, 357
FokI	GGATG	2 cut(s)	545, 898
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	2 cut(s)	203, 357
FspBI	CTAG	3 cut(s)	387, 729, 767
GluI	GCNGC	2 cut(s)	203, 357
GsuI	CTGGAG	3 cut(s)	23, 231, 762
HaeIII	GGCC	1 cut(s)	714
HapII	CCGG	1 cut(s)	107
Hin1II	CATG	3 cut(s)	34, 444, 480
HinfI	GANTC	5 cut(s)	288, 529, 609, 858, 872
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	2 cut(s)	101, 109
Hpy166II	GTNNAC	3 cut(s)	92, 491, 707
Hpy188I	TCNGA	6 cut(s)	48, 220, 307, 534, 801, 877
Hpy188III	TCNNGA	3 cut(s)	210, 633, 918
Hpy8I	GTNNAC	3 cut(s)	92, 491, 707
HpyAV	CCTTC	2 cut(s)	445, 924
HpyCH4III	ACNGT	3 cut(s)	495, 500, 677
HpyCH4V	TGCA	5 cut(s)	202, 359, 480, 814, 889
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 116, 341, 356, 477, 886
HpyF3I	CTNAG	2 cut(s)	120, 648
Hsp92II	CATG	3 cut(s)	34, 444, 480
Kzo9I	GATC	1 cut(s)	783
LmnI	GCTCC	2 cut(s)	67, 920
Lsp1109I	GCAGC	2 cut(s)	214, 343
LweI	GCATC	1 cut(s)	876
MaeI	CTAG	3 cut(s)	387, 729, 767
MaeIII	GTNAC	2 cut(s)	671, 690
MalI	GATC	1 cut(s)	785
MboI	GATC	1 cut(s)	783
MboII	GAAGA	3 cut(s)	14, 275, 781
MhlI	GDGCHC	2 cut(s)	228, 723
MlsI	TGGCCA	1 cut(s)	714
MluCI	AATT	2 cut(s)	568, 636
MluNI	TGGCCA	1 cut(s)	714
MlyI	GAGTC	2 cut(s)	297, 867
Mox20I	TGGCCA	1 cut(s)	714
MroXI	GAANNNNTTC	1 cut(s)	640
MscI	TGGCCA	1 cut(s)	714
MseI	TTAA	1 cut(s)	701
Msp20I	TGGCCA	1 cut(s)	714
MspA1I	CMGCKG	2 cut(s)	205, 323
MspCI	CTTAAG	1 cut(s)	700
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	2 cut(s)	107, 741
MvaI	CCWGG	1 cut(s)	741
MwoI	GCNNNNNNNGC	6 cut(s)	59, 116, 341, 356, 477, 886
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	1 cut(s)	783
NlaIII	CATG	3 cut(s)	34, 444, 480
NspI	RCATGY	1 cut(s)	444
PaqCI	CACCTGC	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	640
PfeI	GAWTC	3 cut(s)	529, 609, 872
PflFI	GACNNNGTC	1 cut(s)	538
PfoI	TCCNGGA	1 cut(s)	739
PkrI	GCNGC	2 cut(s)	204, 358
PleI	GAGTC	2 cut(s)	296, 866
PpsI	GAGTC	2 cut(s)	296, 866
Psp6I	CCWGG	1 cut(s)	739
PspGI	CCWGG	1 cut(s)	739
PspPI	GGNCC	1 cut(s)	540
PstI	CTGCAG	1 cut(s)	204
PstNI	CAGNNNCTG	1 cut(s)	356
PsyI	GACNNNGTC	1 cut(s)	538
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	4 cut(s)	269, 460, 497, 706
RsaNI	GTAC	4 cut(s)	268, 459, 496, 705
SaqAI	TTAA	1 cut(s)	701
SatI	GCNGC	2 cut(s)	203, 357
Sau3AI	GATC	1 cut(s)	783
Sau96I	GGNCC	1 cut(s)	540
SchI	GAGTC	2 cut(s)	297, 867
ScrFI	CCNGG	2 cut(s)	107, 741
SduI	GDGCHC	2 cut(s)	228, 723
SfaNI	GCATC	1 cut(s)	876
SfcI	CTRYAG	2 cut(s)	200, 423
SinI	GGWCC	1 cut(s)	540
SmlI	CTYRAG	2 cut(s)	700, 845
SmoI	CTYRAG	2 cut(s)	700, 845
Sse9I	AATT	2 cut(s)	568, 636
SsiI	CCGC	2 cut(s)	205, 503
SspI	AATATT	2 cut(s)	596, 668
SspMI	CTAG	3 cut(s)	387, 729, 767
StyD4I	CCNGG	2 cut(s)	105, 739
StyI	CCWWGG	1 cut(s)	715
TaaI	ACNGT	3 cut(s)	495, 500, 677
TaqI	TCGA	2 cut(s)	286, 841
TasI	AATT	2 cut(s)	568, 636
TatI	WGTACW	4 cut(s)	267, 458, 495, 704
TfiI	GAWTC	3 cut(s)	529, 609, 872
Tru1I	TTAA	1 cut(s)	701
Tru9I	TTAA	1 cut(s)	701
TscAI	CASTG	2 cut(s)	168, 887
TseI	GCWGC	2 cut(s)	202, 356
TspDTI	ATGAA	3 cut(s)	133, 633, 646
TspRI	CASTG	2 cut(s)	168, 887
Tth111I	GACNNNGTC	1 cut(s)	538
Vha464I	CTTAAG	1 cut(s)	700
VpaK11BI	GGWCC	1 cut(s)	540
XceI	RCATGY	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	640
XspI	CTAG	3 cut(s)	387, 729, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.