Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002170

Physical Location & Seq

Genomic Coordinates Forward (+)

9246267 .. 9247080

Gene Structure 814 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGATTATGCAGGTTCCTTTGTTTGATAATATGGACGAGAGTTTGCTTGATGCCATTTGTGAGAGACTGAAACCAAGTTTATTCACAGAGAGTACTTACATAGTTCGGGAAGGAGATCCTGTTGACGAGATGCTTTTCATCATACGTGGTCGCCTTGAGAGTGTTACAACAGATGGTGGCAGGAGTGGGTTTTTTAACCGAAGTTTCCTGAAAGAAGGTGATTTCTGTGGTGAGGAACTTCTAACTTGGGCACTGGATCCCAAATCTGGTGCCAACCTCCCATCATCTACTCGGACAGTTAAGGCTTTAACTGAGGTTGAGGCCTTTGCTCTTGTGGCTGAAGAGTTGAAATTTGTTGCCAGTCAGTTTAGGCGCCTTCACAGCAGACAGGTTCAGCACACCTTCCGTTTCTACTCACAACAATGGCGGACTTGGGCTGCTTGCTTTATCCAAGCAGCATGGCGTCGCTATTCCAAGAGGAAAATCTTGGAGCTTCGTCGTAAGGAAGAGGAAGCAGAAGCAGAAGCCTTGGGAGGTGCTCGCAGCAACGCTGGAGGTTCATATAGCATTGGTGCCACATTTTTAGCTTCTAGGTTTGCTGCAAATGCACTTCGTAATGTCCACCGAAACAGGAATTTGAAGAGCGCTCGAGAATTAATCAAACTACAAAAGCCTCCGGAGCCCGATTTTAGCGCTGAAGGTGCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005217 GO:0005221 GO:0005223 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042391 GO:0043855 GO:0044425 GO:0044459 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0099094

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

237

Amino Acids

26.79

Weight (kDa)

8.44

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	28 - 117	2.9e-08	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT4G30560 AT4G30560 AT4G30560 AT4G30560 AT4G30560 AT5G57940 AT5G57940 AT5G57940
fragaria_vesca	FvH4_1g00870 FvH4_1g00870 FvH4_1g00870 FvH4_1g00870
malus_domestica	MD02G1007200.v1.1 MD15G1144500.v1.1
prunus_persica	Prupe.7G263200_v2.0.a1 Prupe.7G263200_v2.0.a1 Prupe.7G263200_v2.0.a1 Prupe.7G263200_v2.0.a1
pyrus_communis	pycom02g00610 pycom02g00620 pycom15g13600 pycom15g13610
rosa_chinensis	RchiOBHm_Chr2g0085581
rosa_laevigata	RLG00000015703
rosa_multiflora	Rmu_co8217668.1_g000001 Rmu_ssc0000347.1_g000007
rosa_roxburghii	Rroxscaffold_2G00155250
rosa_rugosa	Rorug01G0461400
rosa_samantha	Rh2AG010500 Rh2BG011100 Rh2CG012000 Rh2DG013000
rosa_wichuraiana	Rw2G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	269, 372, 572
AccIII	TCCGGA	1 cut(s)	676
AciI	CCGC	1 cut(s)	427
AclWI	GGATC	3 cut(s)	110, 251, 264
AcsI	RAATTY	2 cut(s)	350, 634
AcuI	CTGAAG	1 cut(s)	360
AcyI	GRCGYC	2 cut(s)	373, 463
AfaI	GTAC	1 cut(s)	94
AfeI	AGCGCT	2 cut(s)	646, 694
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	349, 640
AluBI	AGCT	2 cut(s)	493, 587
AluI	AGCT	2 cut(s)	493, 587
Alw21I	GWGCWC	1 cut(s)	541
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	3 cut(s)	110, 251, 264
Ama87I	CYCGRG	1 cut(s)	648
Aor13HI	TCCGGA	1 cut(s)	676
Aor51HI	AGCGCT	2 cut(s)	646, 694
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	4 cut(s)	437, 455, 543, 599
ApoI	RAATTY	2 cut(s)	350, 634
AseI	ATTAAT	1 cut(s)	656
AspLEI	GCGC	3 cut(s)	375, 647, 695
AsuHPI	GGTGA	2 cut(s)	230, 242
AvaI	CYCGRG	1 cut(s)	648
BaeGI	GKGCMC	1 cut(s)	253
BamHI	GGATCC	1 cut(s)	256
BanI	GGYRCC	3 cut(s)	269, 372, 572
BanII	GRGCYC	1 cut(s)	684
Bbv12I	GWGCWC	1 cut(s)	541
BbvI	GCAGC	4 cut(s)	424, 467, 555, 586
BccI	CCATC	2 cut(s)	167, 289
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	591
BfoI	RGCGCY	3 cut(s)	376, 648, 696
BisI	GCNGC	4 cut(s)	438, 456, 544, 600
BlsI	GCNGC	4 cut(s)	439, 457, 545, 601
BmcAI	AGTACT	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	648
BmiI	GGNNCC	6 cut(s)	15, 258, 271, 374, 574, 681
BmsI	GCATC	2 cut(s)	40, 120
BpmI	CTGGAG	1 cut(s)	573
BpuEI	CTTGAG	1 cut(s)	176
BsaAI	YACGTR	1 cut(s)	146
BsaHI	GRCGYC	2 cut(s)	373, 463
BsaJI	CCNNGG	1 cut(s)	528
BsaWI	WCCGGW	1 cut(s)	676
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse1I	ACTGG	2 cut(s)	258, 360
BseAI	TCCGGA	1 cut(s)	676
BseDI	CCNNGG	1 cut(s)	528
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	2 cut(s)	258, 360
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	4 cut(s)	424, 467, 555, 586
BshFI	GGCC	1 cut(s)	323
BshNI	GGYRCC	3 cut(s)	269, 372, 572
BsiHKAI	GWGCWC	1 cut(s)	541
BsiHKCI	CYCGRG	1 cut(s)	648
BsiSI	CCGG	1 cut(s)	677
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	323
BsoBI	CYCGRG	1 cut(s)	648
Bsp1286I	GDGCHC	3 cut(s)	253, 541, 684
Bsp13I	TCCGGA	1 cut(s)	676
Bsp143I	GATC	2 cut(s)	115, 256
BspACI	CCGC	1 cut(s)	427
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	304
BspEI	TCCGGA	1 cut(s)	676
BspLI	GGNNCC	6 cut(s)	15, 258, 271, 374, 574, 681
BspPI	GGATC	3 cut(s)	110, 251, 264
BspQI	GCTCTTC	1 cut(s)	635
BspT107I	GGYRCC	3 cut(s)	269, 372, 572
BsrI	ACTGG	2 cut(s)	258, 360
BssECI	CCNNGG	1 cut(s)	528
BssMI	GATC	2 cut(s)	115, 256
BssNI	GRCGYC	2 cut(s)	373, 463
BssT1I	CCWWGG	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	3 cut(s)	336, 501, 635
BstACI	GRCGYC	2 cut(s)	373, 463
BstBAI	YACGTR	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	442, 541
BstDEI	CTNAG	1 cut(s)	312
BstH2I	RGCGCY	3 cut(s)	376, 648, 696
BstHHI	GCGC	3 cut(s)	375, 647, 695
BstKTI	GATC	2 cut(s)	118, 259
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	2 cut(s)	115, 256
BstMWI	GCNNNNNNNGC	5 cut(s)	335, 381, 605, 679, 701
BstSLI	GKGCMC	1 cut(s)	253
BstV1I	GCAGC	4 cut(s)	424, 467, 555, 586
BstX2I	RGATCY	2 cut(s)	115, 256
BstYI	RGATCY	2 cut(s)	115, 256
BsuRI	GGCC	1 cut(s)	323
BtsIMutI	CAGTG	1 cut(s)	251
Cac8I	GCNNGC	2 cut(s)	442, 541
CfoI	GCGC	3 cut(s)	375, 647, 695
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	93
CviAII	CATG	1 cut(s)	459
CviJI	RGCY	9 cut(s)	305, 323, 338, 437, 493, 527, 587, 673, 682
CviKI_1	RGCY	9 cut(s)	305, 323, 338, 437, 493, 527, 587, 673, 682
CviQI	GTAC	1 cut(s)	93
DdeI	CTNAG	1 cut(s)	312
DinI	GGCGCC	1 cut(s)	374
DpnI	GATC	2 cut(s)	117, 258
DpnII	GATC	2 cut(s)	115, 256
Eam1104I	CTCTTC	3 cut(s)	336, 501, 635
EarI	CTCTTC	3 cut(s)	336, 501, 635
EciI	GGCGGA	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	528
Eco147I	AGGCCT	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	684
Eco47III	AGCGCT	2 cut(s)	646, 694
Eco57I	CTGAAG	1 cut(s)	360
Eco88I	CYCGRG	1 cut(s)	648
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	684
EgeI	GGCGCC	1 cut(s)	374
EheI	GGCGCC	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	1 cut(s)	462
FaiI	YATR	7 cut(s)	8, 32, 101, 143, 460, 562, 564
FatI	CATG	1 cut(s)	458
Fnu4HI	GCNGC	4 cut(s)	438, 456, 544, 600
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	4 cut(s)	438, 456, 544, 600
FspBI	CTAG	1 cut(s)	591
GlaI	GCGC	3 cut(s)	374, 646, 694
GluI	GCNGC	4 cut(s)	438, 456, 544, 600
GsuI	CTGGAG	1 cut(s)	573
HaeII	RGCGCY	3 cut(s)	376, 648, 696
HaeIII	GGCC	1 cut(s)	323
HapII	CCGG	1 cut(s)	677
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	3 cut(s)	375, 647, 695
Hin1I	GRCGYC	2 cut(s)	373, 463
Hin1II	CATG	1 cut(s)	462
Hin6I	GCGC	3 cut(s)	373, 645, 693
HinP1I	GCGC	3 cut(s)	373, 645, 693
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	677
HphI	GGTGA	2 cut(s)	230, 242
Hpy166II	GTNNAC	2 cut(s)	124, 622
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	4 cut(s)	107, 208, 650, 677
Hpy8I	GTNNAC	2 cut(s)	124, 622
Hpy99I	CGWCG	2 cut(s)	468, 501
HpyAV	CCTTC	5 cut(s)	104, 209, 386, 412, 692
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	3 cut(s)	10, 602, 608
HpyF10VI	GCNNNNNNNGC	5 cut(s)	335, 381, 605, 679, 701
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	145
Hsp92I	GRCGYC	2 cut(s)	373, 463
Hsp92II	CATG	1 cut(s)	462
HspAI	GCGC	3 cut(s)	373, 645, 693
KasI	GGCGCC	1 cut(s)	372
Kpn2I	TCCGGA	1 cut(s)	676
Kzo9I	GATC	2 cut(s)	115, 256
LguI	GCTCTTC	1 cut(s)	635
LmnI	GCTCC	2 cut(s)	490, 679
Lsp1109I	GCAGC	4 cut(s)	424, 467, 555, 586
LweI	GCATC	2 cut(s)	40, 120
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	2 cut(s)	117, 258
MboI	GATC	2 cut(s)	115, 256
MboII	GAAGA	3 cut(s)	353, 518, 652
MflI	RGATCY	2 cut(s)	115, 256
MhlI	GDGCHC	3 cut(s)	253, 541, 684
MluCI	AATT	3 cut(s)	350, 634, 653
Mly113I	GGCGCC	1 cut(s)	373
MnlI	CCTC	9 cut(s)	226, 287, 307, 313, 471, 502, 527, 548, 684
MroI	TCCGGA	1 cut(s)	676
MseI	TTAA	4 cut(s)	195, 300, 308, 656
MslI	CAYNNNNRTG	1 cut(s)	421
MspI	CCGG	1 cut(s)	677
MwoI	GCNNNNNNNGC	5 cut(s)	335, 381, 605, 679, 701
NarI	GGCGCC	1 cut(s)	373
NdeII	GATC	2 cut(s)	115, 256
NlaIII	CATG	1 cut(s)	462
NlaIV	GGNNCC	6 cut(s)	15, 258, 271, 374, 574, 681
PaeR7I	CTCGAG	1 cut(s)	648
PceI	AGGCCT	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	635
PkrI	GCNGC	4 cut(s)	439, 457, 545, 601
PluTI	GGCGCC	1 cut(s)	376
Ppu21I	YACGTR	1 cut(s)	146
PshBI	ATTAAT	1 cut(s)	656
PspN4I	GGNNCC	6 cut(s)	15, 258, 271, 374, 574, 681
PsuI	RGATCY	2 cut(s)	115, 256
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
RseI	CAYNNNNRTG	1 cut(s)	421
SapI	GCTCTTC	1 cut(s)	635
SaqAI	TTAA	4 cut(s)	195, 300, 308, 656
SatI	GCNGC	4 cut(s)	438, 456, 544, 600
Sau3AI	GATC	2 cut(s)	115, 256
ScaI	AGTACT	1 cut(s)	94
SduI	GDGCHC	3 cut(s)	253, 541, 684
SfaNI	GCATC	2 cut(s)	40, 120
SfoI	GGCGCC	1 cut(s)	374
Sfr274I	CTCGAG	1 cut(s)	648
SlaI	CTCGAG	1 cut(s)	648
SmiMI	CAYNNNNRTG	1 cut(s)	421
SmlI	CTYRAG	2 cut(s)	155, 648
SmoI	CTYRAG	2 cut(s)	155, 648
Sse9I	AATT	3 cut(s)	350, 634, 653
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	1 cut(s)	427
SspDI	GGCGCC	1 cut(s)	372
SspMI	CTAG	1 cut(s)	591
StuI	AGGCCT	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	649
TasI	AATT	3 cut(s)	350, 634, 653
TatI	WGTACW	1 cut(s)	92
Tru1I	TTAA	4 cut(s)	195, 300, 308, 656
Tru9I	TTAA	4 cut(s)	195, 300, 308, 656
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	4 cut(s)	437, 455, 543, 599
TspDTI	ATGAA	2 cut(s)	127, 549
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	1 cut(s)	258
VspI	ATTAAT	1 cut(s)	656
XapI	RAATTY	2 cut(s)	350, 634
XhoI	CTCGAG	1 cut(s)	648
XspI	CTAG	1 cut(s)	591
ZrmI	AGTACT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.