Rh2AG010500

cyclic nucleotide-gated ion channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
859766 .. 862176
2411 bp
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UTR
Exon/CDS
Intron
Rh2AG010500.1

Sequence Viewer

Length: 1359 bp
ATGTTTGACTGTGGCTACACGTCACAGTATCCGGGAGGGCAGAGAGACAAGTTTGTGAGGCTGGATGACTTGGACTCTCGATTATCGTCCTCTTCTGATACTGGAGTGAGAAGGTGTGGACTTAATATTGAAGGACTGACCCGGAGTGCTCCTTCAAGGGATACATCCTTTAAAAAAGGAATGAGAAAGGGCTCTGAAGGACTTAAGTCCATTGGTCGATCACTTGGATTTGGTGTTTCTCGTGCAGTATTCCCTGAAGATCTTAAAGTTTCAGACAAGAAGATATTTGACCCTCAGGACAAATTTCTCCTTTTTTGGAATAGACTTTTCGTCATATCATGTATTCTGGCGGTGTCTGTGGATCCACTTTTTTTCTACCTTCCAGTTATCAATAATGCATCAAATTGTCTTGGTATAGACCGAAAGTTGGCTGTCATAGCAACCACATTGCGAATGATTGTTGATACGTTCTTTCTTCTTCACATGGCTCTCCAGTTTCGGACAGCCTACATTGCTCCATCATCTCGGGTTTTTGGACGAGGTGAACTGGTGATTGACCCGGCAAGAATAGCTAAGAGATACTTACGAGGTTATTTCATCATTGATTTTCTTTCAGTGCTACCTCTACCACAGATTGTAGTTTGGAGGTTTCTCCAGCAGTCTGGAGGTTCAGATGTGCTCGCTACAAAACAGGCCTTGCTTTTTATTATCTTGCTTCAGTACATTCCCAGACTTCTTCGAGTCTTGCCTCTAACCTCCGAACTGAAAAGAACAGCTGGTGTTTTTGCTGAAACTGCTTGGGCAGGTGCTGCATGCTATTTGCTATTATACTTGCTCGCTAGTCATATTGTTGGGGCATTTTGGTATTTGTTAGCTGTAGAACGCAATGATACATGCTGGCAGAAGGCTTGTACTGACATTGGCAACTCATGCAATAAAAGTTTACTGTACTGTGCGGACGAGAAACTGCCACCTGATGTGAATCTGACTTGGTCCAAAGTTAGTGATATCATCCAGTCAAATTGCTCATCGGCTGATGACAATAAATATTTTGATTTTGGAATCTACCAACAGGCTTTATCATCTGGAATTGTTTCATCTAAGAAGTTCATCTCTAAATATTGTTACTGTTTATGGTGGGGGTTACAAAACTTAAGTACACTTGGCCAAGGGCTCTCAACTAGCACCTATCCTGGAGAGGTTATATTTTCCATAGCACTAGCTATATTTGGATTGATCCTCTTCGCACTTCTGATAGGAAATATGCAGGTAAATATGGAACTGATAGCTGATGTTCGTAAGATTAATCGAGTATATAGAGTCCTGAAGATTTTGGTGGTGACTCAGTTTGGAATATGA

Protein Analysis

452

Amino Acids

50.62

Weight (kDa)

9.21

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 105 - 429 2.6e-24 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 794
Acc36I ACCTGC 2 cut(s) 794, 1258
AciI CCGC 2 cut(s) 350, 956
AclWI GGATC 3 cut(s) 356, 369, 1231
AcoI YGGCCR 1 cut(s) 1165
AcsI RAATTY 1 cut(s) 302
AcuI CTGAAG 4 cut(s) 216, 276, 701, 1346
AfaI GTAC 4 cut(s) 722, 913, 950, 1159
AfiI CCNNNNNNNGG 1 cut(s) 427
AflII CTTAAG 2 cut(s) 203, 1153
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 2 cut(s) 131, 156
AhdI GACNNNNNGTC 1 cut(s) 329
AjiI CACGTC 1 cut(s) 21
AjnI CCWGG 1 cut(s) 1192
AluBI AGCT 5 cut(s) 572, 776, 875, 1223, 1289
AluI AGCT 5 cut(s) 572, 776, 875, 1223, 1289
Alw21I GWGCWC 2 cut(s) 151, 681
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 3 cut(s) 356, 369, 1231
AlwNI CAGNNNCTG 1 cut(s) 809
Ama87I CYCGRG 1 cut(s) 525
AoxI GGCC 2 cut(s) 693, 1165
ApeKI GCWGC 1 cut(s) 809
ApoI RAATTY 1 cut(s) 302
AseI ATTAAT 1 cut(s) 1305
Asp700I GAANNNNTTC 1 cut(s) 1093
AspS9I GGNCC 1 cut(s) 993
AsuC2I CCSGG 3 cut(s) 33, 142, 560
AsuHPI GGTGA 3 cut(s) 554, 562, 1351
AvaI CYCGRG 1 cut(s) 525
AvaII GGWCC 1 cut(s) 993
AxyI CCTNAGG 1 cut(s) 294
BaeI ACNNNNGTAYC 2 cut(s) 90, 123
BalI TGGCCA 1 cut(s) 1167
BamHI GGATCC 1 cut(s) 361
BanII GRGCYC 2 cut(s) 194, 1176
BauI CACGAG 1 cut(s) 240
Bbv12I GWGCWC 2 cut(s) 151, 681
BbvI GCAGC 1 cut(s) 796
BccI CCATC 1 cut(s) 526
BciT130I CCWGG 1 cut(s) 1194
BciVI GTATCC 2 cut(s) 39, 154
BcnI CCSGG 3 cut(s) 33, 142, 560
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 3 cut(s) 840, 1182, 1220
BfmI CTRYAG 1 cut(s) 876
BfrI CTTAAG 2 cut(s) 203, 1153
BfuAI ACCTGC 2 cut(s) 794, 1258
BfuI GTATCC 2 cut(s) 39, 154
BglII AGATCT 1 cut(s) 259
BisI GCNGC 1 cut(s) 810
BlsI GCNGC 1 cut(s) 811
Bme1390I CCNGG 4 cut(s) 33, 142, 560, 1194
Bme18I GGWCC 1 cut(s) 993
BmeRI GACNNNNNGTC 1 cut(s) 329
BmeT110I CYCGRG 1 cut(s) 525
BmgBI CACGTC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 993
BmiI GGNNCC 1 cut(s) 363
BmrFI CCNGG 4 cut(s) 33, 142, 560, 1194
BmsI GCATC 1 cut(s) 407
BoxI GACNNNNGTC 1 cut(s) 205
BpmI CTGGAG 5 cut(s) 123, 476, 638, 684, 1215
BpuMI CCSGG 3 cut(s) 33, 142, 560
BsaBI GATNNNNATC 1 cut(s) 981
BsaJI CCNNGG 1 cut(s) 1168
Bsc4I CCNNNNNNNGG 1 cut(s) 427
Bse1I ACTGG 5 cut(s) 106, 383, 493, 552, 1015
Bse21I CCTNAGG 1 cut(s) 294
Bse3DI GCAATG 3 cut(s) 446, 510, 892
Bse8I GATNNNNATC 1 cut(s) 981
BseBI CCWGG 1 cut(s) 1194
BseDI CCNNGG 1 cut(s) 1168
BseGI GGATG 3 cut(s) 70, 164, 1011
BseJI GATNNNNATC 1 cut(s) 981
BseLI CCNNNNNNNGG 1 cut(s) 427
BseMI GCAATG 3 cut(s) 446, 510, 892
BseMII CTCAG 2 cut(s) 308, 1358
BseNI ACTGG 5 cut(s) 106, 383, 493, 552, 1015
BseXI GCAGC 1 cut(s) 796
BsgI GTGCAG 1 cut(s) 264
BshFI GGCC 2 cut(s) 695, 1167
BsiHKAI GWGCWC 2 cut(s) 151, 681
BsiHKCI CYCGRG 1 cut(s) 525
BsiSI CCGG 3 cut(s) 32, 142, 560
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 1 cut(s) 39
BsnI GGCC 2 cut(s) 695, 1167
BsoBI CYCGRG 1 cut(s) 525
Bsp1286I GDGCHC 4 cut(s) 151, 194, 681, 1176
Bsp143I GATC 4 cut(s) 218, 259, 361, 1236
BspACI CCGC 2 cut(s) 350, 956
BspANI GGCC 2 cut(s) 695, 1167
BspCNI CTCAG 2 cut(s) 307, 1357
BspLI GGNNCC 1 cut(s) 363
BspMI ACCTGC 2 cut(s) 794, 1258
BspPI GGATC 3 cut(s) 356, 369, 1231
BspTI CTTAAG 2 cut(s) 203, 1153
BsrDI GCAATG 3 cut(s) 446, 510, 892
BsrI ACTGG 5 cut(s) 106, 383, 493, 552, 1015
BssECI CCNNGG 1 cut(s) 1168
BssMI GATC 4 cut(s) 218, 259, 361, 1236
BssSI CACGAG 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 1168
Bst2BI CACGAG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 1194
Bst4CI ACNGT 5 cut(s) 11, 27, 948, 953, 1130
Bst6I CTCTTC 2 cut(s) 97, 1247
BstAFI CTTAAG 2 cut(s) 203, 1153
BstAPI GCANNNNNTGC 2 cut(s) 809, 930
BstC8I GCNNGC 4 cut(s) 681, 814, 837, 899
BstDEI CTNAG 4 cut(s) 294, 573, 1101, 1344
BstF5I GGATG 3 cut(s) 70, 164, 1011
BstKTI GATC 4 cut(s) 221, 262, 364, 1239
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 4 cut(s) 218, 259, 361, 1236
BstMWI GCNNNNNNNGC 6 cut(s) 437, 512, 569, 794, 809, 930
BstNI CCWGG 1 cut(s) 1194
BstNSI RCATGY 2 cut(s) 816, 897
BstPAI GACNNNNGTC 1 cut(s) 205
BstSCI CCNGG 4 cut(s) 31, 140, 558, 1192
BstSFI CTRYAG 1 cut(s) 876
BstV1I GCAGC 1 cut(s) 796
BstX2I RGATCY 2 cut(s) 259, 361
BstXI CCANNNNNNTGG 1 cut(s) 662
BstYI RGATCY 2 cut(s) 259, 361
Bsu36I CCTNAGG 1 cut(s) 294
BsuI GTATCC 2 cut(s) 39, 154
BsuRI GGCC 2 cut(s) 695, 1167
BtrI CACGTC 1 cut(s) 21
BtsCI GGATG 3 cut(s) 70, 164, 1011
BtsIMutI CAGTG 1 cut(s) 621
BveI ACCTGC 2 cut(s) 794, 1258
Cac8I GCNNGC 4 cut(s) 681, 814, 837, 899
CaiI CAGNNNCTG 1 cut(s) 809
Cfr13I GGNCC 1 cut(s) 993
Csp6I GTAC 4 cut(s) 721, 912, 949, 1158
CviAII CATG 5 cut(s) 339, 484, 813, 894, 930
CviQI GTAC 4 cut(s) 721, 912, 949, 1158
DdeI CTNAG 4 cut(s) 294, 573, 1101, 1344
DpnI GATC 4 cut(s) 220, 261, 363, 1238
DpnII GATC 4 cut(s) 218, 259, 361, 1236
DraI TTTAAA 1 cut(s) 172
DriI GACNNNNNGTC 1 cut(s) 329
EaeI YGGCCR 1 cut(s) 1165
Eam1104I CTCTTC 2 cut(s) 97, 1247
Eam1105I GACNNNNNGTC 1 cut(s) 329
EarI CTCTTC 2 cut(s) 97, 1247
Eco130I CCWWGG 1 cut(s) 1168
Eco147I AGGCCT 1 cut(s) 695
Eco24I GRGCYC 2 cut(s) 194, 1176
Eco32I GATATC 1 cut(s) 1009
Eco47I GGWCC 1 cut(s) 993
Eco57I CTGAAG 4 cut(s) 216, 276, 701, 1346
Eco81I CCTNAGG 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 1192
EcoRV GATATC 1 cut(s) 1009
EcoT14I CCWWGG 1 cut(s) 1168
EcoT22I ATGCAT 1 cut(s) 400
EcoT38I GRGCYC 2 cut(s) 194, 1176
ErhI CCWWGG 1 cut(s) 1168
FaeI CATG 5 cut(s) 342, 487, 816, 897, 933
FalI AAGNNNNNCTT 2 cut(s) 566, 598
FatI CATG 5 cut(s) 338, 483, 812, 893, 929
Fnu4HI GCNGC 1 cut(s) 810
FokI GGATG 3 cut(s) 77, 151, 998
FriOI GRGCYC 2 cut(s) 194, 1176
Fsp4HI GCNGC 1 cut(s) 810
FspBI CTAG 3 cut(s) 840, 1182, 1220
GluI GCNGC 1 cut(s) 810
GsuI CTGGAG 5 cut(s) 123, 476, 638, 684, 1215
HaeIII GGCC 2 cut(s) 695, 1167
HapII CCGG 3 cut(s) 32, 142, 560
Hin1II CATG 5 cut(s) 342, 487, 816, 897, 933
HinfI GANTC 6 cut(s) 74, 741, 982, 1062, 1320, 1342
HpaII CCGG 3 cut(s) 32, 142, 560
HphI GGTGA 3 cut(s) 554, 562, 1351
Hpy166II GTNNAC 4 cut(s) 119, 545, 944, 1160
Hpy188I TCNGA 8 cut(s) 97, 196, 274, 501, 673, 760, 987, 1254
Hpy188III TCNNGA 5 cut(s) 78, 296, 663, 1086, 1324
Hpy8I GTNNAC 4 cut(s) 119, 545, 944, 1160
HpyAV CCTTC 6 cut(s) 105, 125, 162, 191, 389, 898
HpyCH4III ACNGT 5 cut(s) 11, 27, 948, 953, 1130
HpyCH4IV ACGT 2 cut(s) 20, 467
HpyCH4V TGCA 5 cut(s) 245, 398, 812, 933, 1267
HpyF10VI GCNNNNNNNGC 6 cut(s) 437, 512, 569, 794, 809, 930
HpyF3I CTNAG 4 cut(s) 294, 573, 1101, 1344
HpySE526I ACGT 2 cut(s) 20, 467
Hsp92II CATG 5 cut(s) 342, 487, 816, 897, 933
Kzo9I GATC 4 cut(s) 218, 259, 361, 1236
LmnI GCTCC 2 cut(s) 154, 520
Lsp1109I GCAGC 1 cut(s) 796
LweI GCATC 1 cut(s) 407
MaeI CTAG 3 cut(s) 840, 1182, 1220
MaeII ACGT 2 cut(s) 20, 467
MaeIII GTNAC 4 cut(s) 21, 1124, 1143, 1339
MalI GATC 4 cut(s) 220, 261, 363, 1238
MboI GATC 4 cut(s) 218, 259, 361, 1236
MboII GAAGA 8 cut(s) 84, 269, 292, 467, 470, 728, 1234, 1339
MflI RGATCY 2 cut(s) 259, 361
MhlI GDGCHC 4 cut(s) 151, 194, 681, 1176
MlsI TGGCCA 1 cut(s) 1167
MluCI AATT 4 cut(s) 302, 403, 1021, 1089
MluNI TGGCCA 1 cut(s) 1167
MlyI GAGTC 4 cut(s) 68, 750, 1329, 1336
Mox20I TGGCCA 1 cut(s) 1167
Mph1103I ATGCAT 1 cut(s) 400
MroXI GAANNNNTTC 1 cut(s) 1093
MscI TGGCCA 1 cut(s) 1167
MseI TTAA 6 cut(s) 123, 171, 204, 264, 1154, 1305
Msp20I TGGCCA 1 cut(s) 1167
MspA1I CMGCKG 1 cut(s) 776
MspCI CTTAAG 2 cut(s) 203, 1153
MspI CCGG 3 cut(s) 32, 142, 560
MspR9I CCNGG 4 cut(s) 33, 142, 560, 1194
MvaI CCWGG 1 cut(s) 1194
MwoI GCNNNNNNNGC 6 cut(s) 437, 512, 569, 794, 809, 930
NciI CCSGG 3 cut(s) 33, 142, 560
NdeII GATC 4 cut(s) 218, 259, 361, 1236
NlaIII CATG 5 cut(s) 342, 487, 816, 897, 933
NlaIV GGNNCC 1 cut(s) 363
NmuCI GTSAC 2 cut(s) 21, 1339
NsiI ATGCAT 1 cut(s) 400
NspI RCATGY 2 cut(s) 816, 897
PaeI GCATGC 1 cut(s) 816
PaqCI CACCTGC 1 cut(s) 794
PceI AGGCCT 1 cut(s) 695
PdmI GAANNNNTTC 1 cut(s) 1093
PfeI GAWTC 2 cut(s) 982, 1062
PflFI GACNNNGTC 1 cut(s) 991
PfoI TCCNGGA 2 cut(s) 31, 1192
PkrI GCNGC 1 cut(s) 811
PleI GAGTC 4 cut(s) 68, 749, 1328, 1336
PpsI GAGTC 4 cut(s) 68, 749, 1328, 1336
PshAI GACNNNNGTC 1 cut(s) 205
PshBI ATTAAT 1 cut(s) 1305
Psp6I CCWGG 1 cut(s) 1192
PspGI CCWGG 1 cut(s) 1192
PspN4I GGNNCC 1 cut(s) 363
PspPI GGNCC 1 cut(s) 993
PstNI CAGNNNCTG 1 cut(s) 809
PsuI RGATCY 2 cut(s) 259, 361
PsyI GACNNNGTC 1 cut(s) 991
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 4 cut(s) 722, 913, 950, 1159
RsaNI GTAC 4 cut(s) 721, 912, 949, 1158
SaqAI TTAA 6 cut(s) 123, 171, 204, 264, 1154, 1305
SatI GCNGC 1 cut(s) 810
Sau3AI GATC 4 cut(s) 218, 259, 361, 1236
Sau96I GGNCC 1 cut(s) 993
SchI GAGTC 4 cut(s) 68, 750, 1329, 1336
ScrFI CCNGG 4 cut(s) 33, 142, 560, 1194
SduI GDGCHC 4 cut(s) 151, 194, 681, 1176
SfaNI GCATC 1 cut(s) 407
SfcI CTRYAG 1 cut(s) 876
SinI GGWCC 1 cut(s) 993
SmlI CTYRAG 2 cut(s) 203, 1153
SmoI CTYRAG 2 cut(s) 203, 1153
SphI GCATGC 1 cut(s) 816
Sse9I AATT 4 cut(s) 302, 403, 1021, 1089
SseBI AGGCCT 1 cut(s) 695
SsiI CCGC 2 cut(s) 350, 956
SspI AATATT 3 cut(s) 127, 1049, 1121
SspMI CTAG 3 cut(s) 840, 1182, 1220
StuI AGGCCT 1 cut(s) 695
StyD4I CCNGG 4 cut(s) 31, 140, 558, 1192
StyI CCWWGG 1 cut(s) 1168
TaaI ACNGT 5 cut(s) 11, 27, 948, 953, 1130
TaiI ACGT 2 cut(s) 23, 470
TaqI TCGA 4 cut(s) 79, 217, 739, 1309
TaqII GACCGA 1 cut(s) 435
TasI AATT 4 cut(s) 302, 403, 1021, 1089
TatI WGTACW 4 cut(s) 720, 911, 948, 1157
TfiI GAWTC 2 cut(s) 982, 1062
Tru1I TTAA 6 cut(s) 123, 171, 204, 264, 1154, 1305
Tru9I TTAA 6 cut(s) 123, 171, 204, 264, 1154, 1305
TscAI CASTG 1 cut(s) 621
TseFI GTSAC 2 cut(s) 21, 1339
TseI GCWGC 1 cut(s) 809
Tsp45I GTSAC 2 cut(s) 21, 1339
TspDTI ATGAA 3 cut(s) 586, 1086, 1099
TspRI CASTG 1 cut(s) 621
Tth111I GACNNNGTC 1 cut(s) 991
Vha464I CTTAAG 2 cut(s) 203, 1153
VpaK11BI GGWCC 1 cut(s) 993
VspI ATTAAT 1 cut(s) 1305
XapI RAATTY 1 cut(s) 302
XceI RCATGY 2 cut(s) 816, 897
XmnI GAANNNNTTC 1 cut(s) 1093
XspI CTAG 3 cut(s) 840, 1182, 1220
Zsp2I ATGCAT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.