Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002170

Physical Location & Seq

Genomic Coordinates Forward (+)

344859 .. 345452

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g00620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCTTTTCATCATACGTGGTCGCCTTGAGAGCGTAACAACAGATGGTGGTAGGAGTGGGTTTTTTAACCGCAGTTTATTGAAGGAAGGCGATTTCTGTGGTGAGGAGCTTCTTACTTGGGCACTGGATCCCAAATCTGGTGCTAACCTCCCATCATCTACTCGGACGGTAAAGGCTTTAACAGAGGTTGAGGCTTTTGCCCTTGTAGCCGAAGAGTTGAAATTTGTTGCCAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAGCACACCTTCCGTTTCTACTCACAACAGTGGCGGACCTGGGCTGCTTGCTTTATCCAAGCAGCATGGCGCCGCTATTCCAAGAGGAAAATCTTGGAGCTTCGTCGTAAGGAAGAGGAAGCGGAAGCAGAAGCAGAAGCAGAAGCCTTGGGAGGTGCCCGCAGCAATGCTGGAGGTTCGTATAGTATTGGTGCCACCATTTTAGCTTCTAGGTTTGCTGCAAACGCACTTCGTGGTGTTCACCGGAACAGGAATTTGAAGAGTGCTCGAGAATTAGTCAAATTACAAAAGCCTCCGGAGCCCGATTTTAGCGCTGAAGGCGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005217 GO:0005221 GO:0005223 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042391 GO:0043855 GO:0044425 GO:0044459 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0099094

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

198

Amino Acids

22.11

Weight (kDa)

9.69

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT2G23980 AT4G30560 AT4G30560 AT4G30560 AT4G30560 AT4G30560 AT5G57940 AT5G57940 AT5G57940
fragaria_vesca	FvH4_1g00870 FvH4_1g00870 FvH4_1g00870 FvH4_1g00870
malus_domestica	MD02G1007200.v1.1 MD15G1144500.v1.1
prunus_persica	Prupe.7G263200_v2.0.a1 Prupe.7G263200_v2.0.a1 Prupe.7G263200_v2.0.a1 Prupe.7G263200_v2.0.a1
pyrus_communis	pycom02g00610 pycom02g00620 pycom15g13600 pycom15g13610
rosa_chinensis	RchiOBHm_Chr2g0085581
rosa_laevigata	RLG00000015703
rosa_multiflora	Rmu_co8217668.1_g000001 Rmu_ssc0000347.1_g000007
rosa_roxburghii	Rroxscaffold_2G00155250
rosa_rugosa	Rorug01G0461400
rosa_samantha	Rh2AG010500 Rh2BG011100 Rh2CG012000 Rh2DG013000
rosa_wichuraiana	Rw2G000940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	243, 333, 419, 455
AccI	GTMKAC	1 cut(s)	256
AccIII	TCCGGA	1 cut(s)	559
AciI	CCGC	5 cut(s)	70, 298, 337, 386, 424
AclWI	GGATC	2 cut(s)	122, 135
AcsI	RAATTY	2 cut(s)	221, 517
AcyI	GRCGYC	2 cut(s)	244, 334
AdeI	CACNNNGTG	1 cut(s)	497
AfeI	AGCGCT	1 cut(s)	577
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	82, 220, 523
AjnI	CCWGG	1 cut(s)	302
AleI	CACNNNNGTG	1 cut(s)	292
AluBI	AGCT	3 cut(s)	109, 364, 470
AluI	AGCT	3 cut(s)	109, 364, 470
Alw21I	GWGCWC	1 cut(s)	532
AlwI	GGATC	2 cut(s)	122, 135
Ama87I	CYCGRG	1 cut(s)	531
Aor13HI	TCCGGA	1 cut(s)	559
Aor51HI	AGCGCT	1 cut(s)	577
ApeKI	GCWGC	4 cut(s)	308, 326, 426, 482
ApoI	RAATTY	2 cut(s)	221, 517
AspLEI	GCGC	4 cut(s)	246, 336, 578, 587
AspS9I	GGNCC	1 cut(s)	300
AsuHPI	GGTGA	2 cut(s)	113, 497
AvaI	CYCGRG	1 cut(s)	531
AvaII	GGWCC	1 cut(s)	300
BaeGI	GKGCMC	2 cut(s)	124, 424
BamHI	GGATCC	1 cut(s)	127
BanI	GGYRCC	4 cut(s)	243, 333, 419, 455
BanII	GRGCYC	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	4 cut(s)	295, 338, 438, 469
BccI	CCATC	2 cut(s)	38, 160
BciT130I	CCWGG	1 cut(s)	304
BfaI	CTAG	1 cut(s)	474
BfoI	RGCGCY	4 cut(s)	247, 337, 579, 588
BisI	GCNGC	5 cut(s)	309, 327, 337, 427, 483
BlsI	GCNGC	5 cut(s)	310, 328, 338, 428, 484
Bme1390I	CCNGG	1 cut(s)	304
Bme18I	GGWCC	1 cut(s)	300
BmeT110I	CYCGRG	1 cut(s)	531
BmgT120I	GGNCC	1 cut(s)	300
BmiI	GGNNCC	6 cut(s)	129, 245, 335, 421, 457, 564
BmrFI	CCNGG	1 cut(s)	304
BpmI	CTGGAG	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	47
BsaAI	YACGTR	1 cut(s)	17
BsaHI	GRCGYC	2 cut(s)	244, 334
BsaJI	CCNNGG	2 cut(s)	303, 411
BsaWI	WCCGGW	2 cut(s)	507, 559
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	2 cut(s)	129, 231
Bse3DI	GCAATG	1 cut(s)	436
BseAI	TCCGGA	1 cut(s)	559
BseBI	CCWGG	1 cut(s)	304
BseDI	CCNNGG	2 cut(s)	303, 411
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	436
BseNI	ACTGG	2 cut(s)	129, 231
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	2 cut(s)	124, 424
BseXI	GCAGC	4 cut(s)	295, 338, 438, 469
BshNI	GGYRCC	4 cut(s)	243, 333, 419, 455
BsiHKAI	GWGCWC	1 cut(s)	532
BsiHKCI	CYCGRG	1 cut(s)	531
BsiSI	CCGG	2 cut(s)	508, 560
BslI	CCNNNNNNNGG	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	531
Bsp1286I	GDGCHC	4 cut(s)	124, 424, 532, 567
Bsp13I	TCCGGA	1 cut(s)	559
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	5 cut(s)	70, 298, 337, 386, 424
BspEI	TCCGGA	1 cut(s)	559
BspLI	GGNNCC	6 cut(s)	129, 245, 335, 421, 457, 564
BspPI	GGATC	2 cut(s)	122, 135
BspT107I	GGYRCC	4 cut(s)	243, 333, 419, 455
BsrDI	GCAATG	1 cut(s)	436
BsrI	ACTGG	2 cut(s)	129, 231
BssECI	CCNNGG	2 cut(s)	303, 411
BssMI	GATC	1 cut(s)	127
BssNI	GRCGYC	2 cut(s)	244, 334
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	304
Bst4CI	ACNGT	3 cut(s)	169, 254, 294
Bst6I	CTCTTC	3 cut(s)	207, 372, 518
BstACI	GRCGYC	2 cut(s)	244, 334
BstBAI	YACGTR	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	313, 424
BstH2I	RGCGCY	4 cut(s)	247, 337, 579, 588
BstHHI	GCGC	4 cut(s)	246, 336, 578, 587
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 206, 488, 562, 582, 584
BstNI	CCWGG	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	302
BstSLI	GKGCMC	2 cut(s)	124, 424
BstV1I	GCAGC	4 cut(s)	295, 338, 438, 469
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BtsIMutI	CAGTG	2 cut(s)	122, 299
Cac8I	GCNNGC	2 cut(s)	313, 424
CfoI	GCGC	4 cut(s)	246, 336, 578, 587
Cfr13I	GGNCC	1 cut(s)	300
CviAII	CATG	1 cut(s)	330
DinI	GGCGCC	2 cut(s)	245, 335
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
DraIII	CACNNNGTG	1 cut(s)	497
Eam1104I	CTCTTC	3 cut(s)	207, 372, 518
EarI	CTCTTC	3 cut(s)	207, 372, 518
EciI	GGCGGA	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	567
Eco47I	GGWCC	1 cut(s)	300
Eco47III	AGCGCT	1 cut(s)	577
Eco88I	CYCGRG	1 cut(s)	531
EcoRII	CCWGG	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	567
EgeI	GGCGCC	2 cut(s)	245, 335
EheI	GGCGCC	2 cut(s)	245, 335
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	1 cut(s)	333
FaiI	YATR	3 cut(s)	14, 331, 447
FatI	CATG	1 cut(s)	329
FauI	CCCGC	1 cut(s)	431
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	5 cut(s)	309, 327, 337, 427, 483
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	5 cut(s)	309, 327, 337, 427, 483
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	4 cut(s)	245, 335, 577, 586
GluI	GCNGC	5 cut(s)	309, 327, 337, 427, 483
GsuI	CTGGAG	1 cut(s)	456
HaeII	RGCGCY	4 cut(s)	247, 337, 579, 588
HapII	CCGG	2 cut(s)	508, 560
HhaI	GCGC	4 cut(s)	246, 336, 578, 587
Hin1I	GRCGYC	2 cut(s)	244, 334
Hin1II	CATG	1 cut(s)	333
Hin6I	GCGC	4 cut(s)	244, 334, 576, 585
HinP1I	GCGC	4 cut(s)	244, 334, 576, 585
HpaII	CCGG	2 cut(s)	508, 560
HphI	GGTGA	2 cut(s)	113, 497
Hpy166II	GTNNAC	2 cut(s)	257, 505
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	2 cut(s)	533, 560
Hpy8I	GTNNAC	2 cut(s)	257, 505
Hpy99I	CGWCG	1 cut(s)	372
HpyAV	CCTTC	5 cut(s)	76, 80, 257, 283, 575
HpyCH4III	ACNGT	3 cut(s)	169, 254, 294
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	485
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 206, 488, 562, 582, 584
HpySE526I	ACGT	1 cut(s)	16
Hsp92I	GRCGYC	2 cut(s)	244, 334
Hsp92II	CATG	1 cut(s)	333
HspAI	GCGC	4 cut(s)	244, 334, 576, 585
KasI	GGCGCC	2 cut(s)	243, 333
Kpn2I	TCCGGA	1 cut(s)	559
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	3 cut(s)	106, 361, 562
Lsp1109I	GCAGC	4 cut(s)	295, 338, 438, 469
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	3 cut(s)	224, 389, 535
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	4 cut(s)	124, 424, 532, 567
MluCI	AATT	4 cut(s)	221, 517, 536, 545
Mly113I	GGCGCC	2 cut(s)	244, 334
MnlI	CCTC	9 cut(s)	97, 158, 178, 184, 342, 373, 410, 431, 567
MroI	TCCGGA	1 cut(s)	559
MseI	TTAA	3 cut(s)	66, 179, 592
MslI	CAYNNNNRTG	1 cut(s)	292
MspI	CCGG	2 cut(s)	508, 560
MspR9I	CCNGG	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	304
MwoI	GCNNNNNNNGC	6 cut(s)	30, 206, 488, 562, 582, 584
NarI	GGCGCC	2 cut(s)	244, 334
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	333
NlaIV	GGNNCC	6 cut(s)	129, 245, 335, 421, 457, 564
OliI	CACNNNNGTG	1 cut(s)	292
PaeR7I	CTCGAG	1 cut(s)	531
PkrI	GCNGC	5 cut(s)	310, 328, 338, 428, 484
PluTI	GGCGCC	2 cut(s)	247, 337
Ppu21I	YACGTR	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	302
PspN4I	GGNNCC	6 cut(s)	129, 245, 335, 421, 457, 564
PspPI	GGNCC	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	292
SaqAI	TTAA	3 cut(s)	66, 179, 592
SatI	GCNGC	5 cut(s)	309, 327, 337, 427, 483
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	300
ScrFI	CCNGG	1 cut(s)	304
SduI	GDGCHC	4 cut(s)	124, 424, 532, 567
SfoI	GGCGCC	2 cut(s)	245, 335
Sfr274I	CTCGAG	1 cut(s)	531
SinI	GGWCC	1 cut(s)	300
SlaI	CTCGAG	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	292
SmlI	CTYRAG	2 cut(s)	26, 531
SmoI	CTYRAG	2 cut(s)	26, 531
Sse9I	AATT	4 cut(s)	221, 517, 536, 545
SsiI	CCGC	5 cut(s)	70, 298, 337, 386, 424
SspDI	GGCGCC	2 cut(s)	243, 333
SspMI	CTAG	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	302
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	3 cut(s)	169, 254, 294
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	532
TasI	AATT	4 cut(s)	221, 517, 536, 545
TauI	GCSGC	1 cut(s)	339
Tru1I	TTAA	3 cut(s)	66, 179, 592
Tru9I	TTAA	3 cut(s)	66, 179, 592
TscAI	CASTG	2 cut(s)	129, 299
TseI	GCWGC	4 cut(s)	308, 326, 426, 482
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	2 cut(s)	129, 299
VpaK11BI	GGWCC	1 cut(s)	300
XapI	RAATTY	2 cut(s)	221, 517
XhoI	CTCGAG	1 cut(s)	531
XmiI	GTMKAC	1 cut(s)	256
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.