Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0018340

Physical Location & Seq

Genomic Coordinates Forward (+)

669354 .. 671040

Gene Structure 1687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01322.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTTTATTATCCTACTGGAAACAATAATGTGTTACATGCAAAGGAGAGTACTTACGTCAATTGGGATTGTAGGCAACATCAAAAGATCAGTTTATAGGCTATTAAATATAGTTCCAAGTACAGACGGTTTTGACAGCAATGCTCCGAATCTGCAAGTTTTTAGTTACGCAACCATCAAAGCAGCTGCAAATAACTTTTCGAGTAAGAATACGCTTGGAGAGGGTGGCTTTGGACCTGTATACAAGGGTACGTTAAGGAAGGGCCAGCAAATAGCAGTGAAAAGACTTTCGAAAACTTCACACCAAGGCCTTGAAGAGTTTGAAAATGAGGTCACACTTACTGCAACACTGCACCATGTGAATCTAGTTAGAGTTCTGGGATATTGCACCAAGAGGGAAGAAAAGATGCTGATATATGAGTACATGCCAAACAAAAGCTTGGATCTCTACCTCTTTGATCCAAGTAGATGCTATCTTTTGCATTGGGAGCAACGTGTCCACATCATTGAAGGGGTAATTCAAGGGCTTCTATATCTCCAAGAATACTCAAACTCTACAATAATTCACCGTGATCTGAAATCTAGCAACATTTTGTTAGATGATAAGATGAACCCGAAAATATCAGATTTTGGTCTAGCCAGAGCTTTCAGGAAGAATGAACTTGAGGCAAACACTGGTCGCATTGCATATAAGTTGTGGAAAGAAGGCCAAGGCATGGATTTTGTAGATCCTACCCTAGATGATTCGACATCGTCTTGCAAGCTCTTAAGATGCATGGGGGTAGCGTTGTTATGTGTCCAAGAAAATCCAGTAGATAGACCATCCATGCTGGAGGTTTCTTCAATGCTTAAGAGCGAAAGTGCAGCCATCATTAGTCCTAAAAAGACTGCTTTCTCAGTTCGGACATCAGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

306

Amino Acids

34.41

Weight (kDa)

8.77

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	67 - 228	4.4e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	69 - 222	3.7e-33	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01322
rosa_laevigata	RLG00000022497 RLG00000033859
rosa_roxburghii	Rroxscaffold_4G00317450 Rroxscaffold_6G00416200
rosa_rugosa	Rorug05G0519400
rosa_samantha	Rh4DG314500 Rh6CG256900 Rh6DG248900
rosa_wichuraiana	Rw1G010230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	715
AccI	GTMKAC	1 cut(s)	240
AclWI	GGATC	3 cut(s)	450, 452, 722
AdeI	CACNNNGTG	1 cut(s)	358
AfaI	GTAC	4 cut(s)	51, 121, 250, 422
AfiI	CCNNNNNNNGG	1 cut(s)	715
AflII	CTTAAG	2 cut(s)	766, 848
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	5 cut(s)	314, 323, 509, 521, 843
AluBI	AGCT	4 cut(s)	185, 438, 644, 763
AluI	AGCT	4 cut(s)	185, 438, 644, 763
AlwI	GGATC	3 cut(s)	450, 452, 722
AoxI	GGCC	3 cut(s)	262, 307, 706
ApeKI	GCWGC	3 cut(s)	182, 185, 863
AspS9I	GGNCC	2 cut(s)	233, 262
AsuHPI	GGTGA	1 cut(s)	557
AsuII	TTCGAA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	233
BbvI	GCAGC	3 cut(s)	172, 194, 875
BccI	CCATC	3 cut(s)	182, 829, 875
BfaI	CTAG	4 cut(s)	365, 582, 635, 737
BfrI	CTTAAG	2 cut(s)	766, 848
BisI	GCNGC	3 cut(s)	183, 186, 864
BlsI	GCNGC	3 cut(s)	184, 187, 865
BmcAI	AGTACT	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	233, 262
BmsI	GCATC	3 cut(s)	396, 458, 761
BpmI	CTGGAG	1 cut(s)	851
Bpu14I	TTCGAA	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	683
BsaJI	CCNNGG	2 cut(s)	304, 709
Bsc4I	CCNNNNNNNGG	1 cut(s)	715
Bse1I	ACTGG	3 cut(s)	21, 679, 809
Bse3DI	GCAATG	2 cut(s)	145, 681
BseDI	CCNNGG	2 cut(s)	304, 709
BseGI	GGATG	1 cut(s)	821
BseLI	CCNNNNNNNGG	1 cut(s)	715
BseMI	GCAATG	2 cut(s)	145, 681
BseMII	CTCAG	1 cut(s)	909
BseNI	ACTGG	3 cut(s)	21, 679, 809
BseXI	GCAGC	3 cut(s)	172, 194, 875
BsgI	GTGCAG	2 cut(s)	335, 882
BshFI	GGCC	3 cut(s)	264, 309, 708
BslI	CCNNNNNNNGG	1 cut(s)	715
BsnI	GGCC	3 cut(s)	264, 309, 708
Bsp119I	TTCGAA	1 cut(s)	290
Bsp143I	GATC	5 cut(s)	86, 442, 457, 571, 727
BspANI	GGCC	3 cut(s)	264, 309, 708
BspCNI	CTCAG	1 cut(s)	908
BspPI	GGATC	3 cut(s)	450, 452, 722
BspT104I	TTCGAA	1 cut(s)	290
BspTI	CTTAAG	2 cut(s)	766, 848
BsrDI	GCAATG	2 cut(s)	145, 681
BsrI	ACTGG	3 cut(s)	21, 679, 809
BssECI	CCNNGG	2 cut(s)	304, 709
BssMI	GATC	5 cut(s)	86, 442, 457, 571, 727
BssNAI	GTATAC	1 cut(s)	241
BssT1I	CCWWGG	2 cut(s)	304, 709
Bst1107I	GTATAC	1 cut(s)	241
Bst4CI	ACNGT	2 cut(s)	128, 569
Bst6I	CTCTTC	1 cut(s)	309
BstAFI	CTTAAG	2 cut(s)	766, 848
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	266, 761
BstDEI	CTNAG	1 cut(s)	895
BstF5I	GGATG	1 cut(s)	821
BstKTI	GATC	5 cut(s)	89, 445, 460, 574, 730
BstMBI	GATC	5 cut(s)	86, 442, 457, 571, 727
BstMWI	GCNNNNNNNGC	1 cut(s)	487
BstNSI	RCATGY	2 cut(s)	40, 427
BstV1I	GCAGC	3 cut(s)	172, 194, 875
BstX2I	RGATCY	2 cut(s)	442, 727
BstYI	RGATCY	2 cut(s)	442, 727
BstZ17I	GTATAC	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	264, 309, 708
BtsCI	GGATG	1 cut(s)	821
BtsI	GCAGTG	2 cut(s)	282, 347
BtsIMutI	CAGTG	3 cut(s)	282, 347, 672
Cac8I	GCNNGC	2 cut(s)	266, 761
Cfr13I	GGNCC	2 cut(s)	233, 262
Csp6I	GTAC	4 cut(s)	50, 120, 249, 421
CviAII	CATG	6 cut(s)	37, 356, 424, 715, 775, 826
CviQI	GTAC	4 cut(s)	50, 120, 249, 421
DdeI	CTNAG	1 cut(s)	895
DpnI	GATC	5 cut(s)	88, 444, 459, 573, 729
DpnII	GATC	5 cut(s)	86, 442, 457, 571, 727
DraIII	CACNNNGTG	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco130I	CCWWGG	2 cut(s)	304, 709
Eco147I	AGGCCT	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	233
EcoT14I	CCWWGG	2 cut(s)	304, 709
EcoT22I	ATGCAT	1 cut(s)	776
ErhI	CCWWGG	2 cut(s)	304, 709
FaeI	CATG	6 cut(s)	40, 359, 427, 718, 778, 829
FatI	CATG	6 cut(s)	36, 355, 423, 714, 774, 825
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	3 cut(s)	183, 186, 864
FokI	GGATG	1 cut(s)	808
Fsp4HI	GCNGC	3 cut(s)	183, 186, 864
FspBI	CTAG	4 cut(s)	365, 582, 635, 737
GluI	GCNGC	3 cut(s)	183, 186, 864
GsuI	CTGGAG	1 cut(s)	851
HaeIII	GGCC	3 cut(s)	264, 309, 708
Hin1II	CATG	6 cut(s)	40, 359, 427, 718, 778, 829
HindIII	AAGCTT	1 cut(s)	436
HinfI	GANTC	3 cut(s)	148, 361, 743
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	2 cut(s)	241, 499
Hpy188I	TCNGA	5 cut(s)	147, 576, 625, 903, 910
Hpy188III	TCNNGA	1 cut(s)	649
Hpy8I	GTNNAC	2 cut(s)	241, 499
HpyAV	CCTTC	4 cut(s)	253, 503, 698, 905
HpyCH4III	ACNGT	2 cut(s)	128, 569
HpyCH4IV	ACGT	3 cut(s)	56, 251, 493
HpyF10VI	GCNNNNNNNGC	1 cut(s)	487
HpyF3I	CTNAG	1 cut(s)	895
HpySE526I	ACGT	3 cut(s)	56, 251, 493
Hsp92II	CATG	6 cut(s)	40, 359, 427, 718, 778, 829
Kzo9I	GATC	5 cut(s)	86, 442, 457, 571, 727
LmnI	GCTCC	2 cut(s)	148, 487
LpnPI	CCDG	9 cut(s)	2, 249, 278, 362, 634, 652, 660, 815, 822
Lsp1109I	GCAGC	3 cut(s)	172, 194, 875
LweI	GCATC	3 cut(s)	396, 458, 761
MaeI	CTAG	4 cut(s)	365, 582, 635, 737
MaeII	ACGT	3 cut(s)	56, 251, 493
MaeIII	GTNAC	3 cut(s)	32, 164, 331
MalI	GATC	5 cut(s)	88, 444, 459, 573, 729
MboI	GATC	5 cut(s)	86, 442, 457, 571, 727
MboII	GAAGA	4 cut(s)	326, 410, 664, 831
MfeI	CAATTG	1 cut(s)	60
MflI	RGATCY	2 cut(s)	442, 727
MluCI	AATT	3 cut(s)	60, 516, 561
MnlI	CCTC	6 cut(s)	214, 322, 387, 461, 658, 826
Mph1103I	ATGCAT	1 cut(s)	776
MseI	TTAA	4 cut(s)	104, 254, 767, 849
MspA1I	CMGCKG	1 cut(s)	185
MspCI	CTTAAG	2 cut(s)	766, 848
MunI	CAATTG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	487
NdeII	GATC	5 cut(s)	86, 442, 457, 571, 727
NlaIII	CATG	6 cut(s)	40, 359, 427, 718, 778, 829
NmuCI	GTSAC	1 cut(s)	331
NsiI	ATGCAT	1 cut(s)	776
NspI	RCATGY	2 cut(s)	40, 427
NspV	TTCGAA	1 cut(s)	290
PceI	AGGCCT	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	148, 361, 743
PflFI	GACNNNGTC	1 cut(s)	751
PflMI	CCANNNNNTGG	1 cut(s)	715
PkrI	GCNGC	3 cut(s)	184, 187, 865
PspPI	GGNCC	2 cut(s)	233, 262
PsuI	RGATCY	2 cut(s)	442, 727
PsyI	GACNNNGTC	1 cut(s)	751
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	4 cut(s)	51, 121, 250, 422
RsaNI	GTAC	4 cut(s)	50, 120, 249, 421
SaqAI	TTAA	4 cut(s)	104, 254, 767, 849
SatI	GCNGC	3 cut(s)	183, 186, 864
Sau3AI	GATC	5 cut(s)	86, 442, 457, 571, 727
Sau96I	GGNCC	2 cut(s)	233, 262
ScaI	AGTACT	1 cut(s)	51
SfaNI	GCATC	3 cut(s)	396, 458, 761
SfuI	TTCGAA	1 cut(s)	290
SinI	GGWCC	1 cut(s)	233
SmlI	CTYRAG	3 cut(s)	662, 766, 848
SmoI	CTYRAG	3 cut(s)	662, 766, 848
Sse9I	AATT	3 cut(s)	60, 516, 561
SseBI	AGGCCT	1 cut(s)	309
SspMI	CTAG	4 cut(s)	365, 582, 635, 737
StuI	AGGCCT	1 cut(s)	309
StyI	CCWWGG	2 cut(s)	304, 709
TaaI	ACNGT	2 cut(s)	128, 569
TaiI	ACGT	3 cut(s)	59, 254, 496
TaqI	TCGA	3 cut(s)	200, 290, 746
TasI	AATT	3 cut(s)	60, 516, 561
TatI	WGTACW	3 cut(s)	49, 119, 420
TfiI	GAWTC	3 cut(s)	148, 361, 743
Tru1I	TTAA	4 cut(s)	104, 254, 767, 849
Tru9I	TTAA	4 cut(s)	104, 254, 767, 849
TscAI	CASTG	3 cut(s)	282, 354, 679
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	3 cut(s)	182, 185, 863
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	2 cut(s)	623, 672
TspRI	CASTG	3 cut(s)	282, 354, 679
Tth111I	GACNNNGTC	1 cut(s)	751
Van91I	CCANNNNNTGG	1 cut(s)	715
Vha464I	CTTAAG	2 cut(s)	766, 848
VpaK11BI	GGWCC	1 cut(s)	233
XceI	RCATGY	2 cut(s)	40, 427
XmiI	GTMKAC	1 cut(s)	240
XspI	CTAG	4 cut(s)	365, 582, 635, 737
ZrmI	AGTACT	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.