Rroxscaffold_4G00317450

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0018340
Physical Location & Seq
Reverse (-)
42702249 .. 42706242
3994 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00317450.1

Sequence Viewer

Length: 816 bp
ATGGCAACGCTGTCTGAGAAAGTTGAAGTCAATGGCAAGATATGCTATACAATTATTTTACTAGAATTTAATCTGTACAAGATCCTAACTTTGTTTGAATTTGAAGTTAAAGGTCGCGACTTTATCCTGGATAGGTGGGTTGAAAATAATGATAAAGACTTAAGGAGATCAATCAGGGAAATTTTGACAGTATACTGTGGCACACTGGTCAAGTCTCTATCAGCAAACATAACAACTGCAACTGGACCCACCTGGGCTCTTGCAAAAGATGGTGATGAACAAGATAGTACTTGGATTTTCGTCCTATCCCAAAATCACTCATCAAGGGCAGCAGGTAGCTCAAGAGGAAGAAGGTCAACTGAACAAGAAACGGTTATTGGTGATTGCTCTGATCACAATTCCTATGATTGTGATCCTACTGGGAACAATGATGGTGGATGCCCAGGCATATCGATGGATTCCGAGAGCAAAGAAAATGCAAGACCAGATGTTTCAATCATTGAATATAATGGTTTTAAAATAGAGACATACAGTGTTGAAAAGGGATTCACTCTCGGATTTCACTTTTGCTCTGAATCCCTGTGTATAAAACCGACATCTCCAGCAGCTTTCCAATTCGAGAAGCCTCCTCTACTGTTAAGCGATATCAGGTTGGCTACCTATGATCTATCTGAGCTGCAAATTGAGGGTGATGGAAATTGGCAGTTTCGAGCAAGAGCTGATCAGTTGTTTCGCAATCCAGATTACCATAAGCATGTTAGAAAGCAGATCACTTTTAACTTGCTTTCAGACAATGCAATTTCTGAGTTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

271

Amino Acids

30.57

Weight (kDa)

5.0

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01322
rosa_laevigata RLG00000022497 RLG00000033859
rosa_roxburghii Rroxscaffold_4G00317450 Rroxscaffold_6G00416200
rosa_rugosa Rorug05G0519400
rosa_samantha Rh4DG314500 Rh6CG256900 Rh6DG248900
rosa_wichuraiana Rw1G010230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 323
AccI GTMKAC 1 cut(s) 192
AccII CGCG 1 cut(s) 117
AclWI GGATC 2 cut(s) 76, 407
AcsI RAATTY 3 cut(s) 65, 98, 180
AfaI GTAC 2 cut(s) 77, 289
AflII CTTAAG 1 cut(s) 160
AgsI TTSAA 7 cut(s) 26, 98, 104, 143, 495, 503, 539
AjnI CCWGG 3 cut(s) 126, 251, 442
AjuI GAANNNNNNNTTGG 2 cut(s) 360, 392
AluBI AGCT 4 cut(s) 339, 608, 676, 719
AluI AGCT 4 cut(s) 339, 608, 676, 719
Alw26I GTCTC 2 cut(s) 219, 518
AlwI GGATC 2 cut(s) 76, 407
ApeKI GCWGC 3 cut(s) 329, 605, 676
ApoI RAATTY 3 cut(s) 65, 98, 180
AspS9I GGNCC 1 cut(s) 245
AsuHPI GGTGA 3 cut(s) 284, 392, 701
AvaII GGWCC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 259
BbvI GCAGC 3 cut(s) 341, 617, 663
BccI CCATC 4 cut(s) 263, 425, 448, 686
BciT130I CCWGG 3 cut(s) 128, 253, 444
BclI TGATCA 2 cut(s) 391, 721
BcoDI GTCTC 2 cut(s) 219, 518
BfaI CTAG 1 cut(s) 62
BfrI CTTAAG 1 cut(s) 160
BfuAI ACCTGC 1 cut(s) 323
BisI GCNGC 3 cut(s) 330, 606, 677
BlsI GCNGC 3 cut(s) 331, 607, 678
BmcAI AGTACT 1 cut(s) 289
Bme1390I CCNGG 3 cut(s) 128, 253, 444
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 3 cut(s) 128, 253, 444
BmrI ACTGGG 1 cut(s) 429
BmsI GCATC 1 cut(s) 428
BmuI ACTGGG 1 cut(s) 429
BpmI CTGGAG 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 325
Bsa29I ATCGAT 1 cut(s) 452
BsaBI GATNNNNATC 1 cut(s) 411
BsaJI CCNNGG 2 cut(s) 252, 442
Bse1I ACTGG 3 cut(s) 210, 247, 424
Bse8I GATNNNNATC 1 cut(s) 411
BseBI CCWGG 3 cut(s) 128, 253, 444
BseCI ATCGAT 1 cut(s) 452
BseDI CCNNGG 2 cut(s) 252, 442
BseGI GGATG 1 cut(s) 443
BseJI GATNNNNATC 1 cut(s) 411
BseMII CTCAG 3 cut(s) 6, 663, 795
BseNI ACTGG 3 cut(s) 210, 247, 424
BseRI GAGGAG 1 cut(s) 618
BseXI GCAGC 3 cut(s) 341, 617, 663
Bsh1236I CGCG 1 cut(s) 117
BshVI ATCGAT 1 cut(s) 452
BsmAI GTCTC 2 cut(s) 219, 518
Bsp1286I GDGCHC 1 cut(s) 259
Bsp1407I TGTACA 1 cut(s) 75
Bsp143I GATC 7 cut(s) 81, 167, 391, 412, 664, 721, 768
Bsp68I TCGCGA 1 cut(s) 117
BspCNI CTCAG 3 cut(s) 7, 664, 796
BspDI ATCGAT 1 cut(s) 452
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 323
BspPI GGATC 2 cut(s) 76, 407
BspTI CTTAAG 1 cut(s) 160
BsrGI TGTACA 1 cut(s) 75
BsrI ACTGG 3 cut(s) 210, 247, 424
BssECI CCNNGG 2 cut(s) 252, 442
BssMI GATC 7 cut(s) 81, 167, 391, 412, 664, 721, 768
BssNAI GTATAC 1 cut(s) 193
Bst1107I GTATAC 1 cut(s) 193
Bst2UI CCWGG 3 cut(s) 128, 253, 444
Bst4CI ACNGT 5 cut(s) 190, 197, 373, 533, 636
BstAFI CTTAAG 1 cut(s) 160
BstAPI GCANNNNNTGC 1 cut(s) 42
BstAUI TGTACA 1 cut(s) 75
BstDEI CTNAG 3 cut(s) 15, 672, 804
BstF5I GGATG 1 cut(s) 443
BstFNI CGCG 1 cut(s) 117
BstKTI GATC 7 cut(s) 84, 170, 394, 415, 667, 724, 771
BstMAI GTCTC 2 cut(s) 219, 518
BstMBI GATC 7 cut(s) 81, 167, 391, 412, 664, 721, 768
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstNI CCWGG 3 cut(s) 128, 253, 444
BstNSI RCATGY 1 cut(s) 758
BstSCI CCNGG 3 cut(s) 126, 251, 442
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 3 cut(s) 341, 617, 663
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BstZ17I GTATAC 1 cut(s) 193
Bsu15I ATCGAT 1 cut(s) 452
BsuTUI ATCGAT 1 cut(s) 452
BtsCI GGATG 1 cut(s) 443
BtsIMutI CAGTG 2 cut(s) 203, 538
BtuMI TCGCGA 1 cut(s) 117
BveI ACCTGC 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 245
ClaI ATCGAT 1 cut(s) 452
Csp6I GTAC 2 cut(s) 76, 288
CspCI CAANNNNNGTGG 2 cut(s) 415, 450
CviAII CATG 1 cut(s) 755
CviJI RGCY 7 cut(s) 257, 339, 608, 625, 656, 676, 719
CviKI_1 RGCY 7 cut(s) 257, 339, 608, 625, 656, 676, 719
CviQI GTAC 2 cut(s) 76, 288
DdeI CTNAG 3 cut(s) 15, 672, 804
DpnI GATC 7 cut(s) 83, 169, 393, 414, 666, 723, 770
DpnII GATC 7 cut(s) 81, 167, 391, 412, 664, 721, 768
DraI TTTAAA 1 cut(s) 517
Eco24I GRGCYC 1 cut(s) 259
Eco32I GATATC 1 cut(s) 646
Eco47I GGWCC 1 cut(s) 245
EcoRII CCWGG 3 cut(s) 126, 251, 442
EcoRV GATATC 1 cut(s) 646
EcoT38I GRGCYC 1 cut(s) 259
FaeI CATG 1 cut(s) 758
FatI CATG 1 cut(s) 754
FbaI TGATCA 2 cut(s) 391, 721
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 3 cut(s) 330, 606, 677
FokI GGATG 1 cut(s) 450
FriOI GRGCYC 1 cut(s) 259
Fsp4HI GCNGC 3 cut(s) 330, 606, 677
FspBI CTAG 1 cut(s) 62
GluI GCNGC 3 cut(s) 330, 606, 677
GsuI CTGGAG 1 cut(s) 585
Hin1II CATG 1 cut(s) 758
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HinfI GANTC 3 cut(s) 458, 546, 575
HphI GGTGA 3 cut(s) 284, 392, 701
Hpy166II GTNNAC 2 cut(s) 193, 357
Hpy188I TCNGA 8 cut(s) 16, 391, 463, 557, 574, 673, 790, 805
Hpy188III TCNNGA 4 cut(s) 116, 342, 619, 740
Hpy8I GTNNAC 2 cut(s) 193, 357
HpyAV CCTTC 1 cut(s) 345
HpyCH4III ACNGT 5 cut(s) 190, 197, 373, 533, 636
HpyCH4V TGCA 5 cut(s) 239, 263, 479, 679, 797
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 3 cut(s) 15, 672, 804
Hsp92II CATG 1 cut(s) 758
Ksp22I TGATCA 2 cut(s) 391, 721
Kzo9I GATC 7 cut(s) 81, 167, 391, 412, 664, 721, 768
Lsp1109I GCAGC 3 cut(s) 341, 617, 663
LweI GCATC 1 cut(s) 428
MaeI CTAG 1 cut(s) 62
MalI GATC 7 cut(s) 83, 169, 393, 414, 666, 723, 770
MboI GATC 7 cut(s) 81, 167, 391, 412, 664, 721, 768
MboII GAAGA 1 cut(s) 360
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 9 cut(s) 51, 65, 98, 180, 397, 614, 681, 697, 798
MnlI CCTC 4 cut(s) 338, 636, 639, 679
MseI TTAA 7 cut(s) 69, 108, 161, 516, 638, 777, 814
MslI CAYNNNNRTG 2 cut(s) 452, 753
MspCI CTTAAG 1 cut(s) 160
MspR9I CCNGG 3 cut(s) 128, 253, 444
MvaI CCWGG 3 cut(s) 128, 253, 444
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 42
NdeII GATC 7 cut(s) 81, 167, 391, 412, 664, 721, 768
NlaIII CATG 1 cut(s) 758
NlaIV GGNNCC 1 cut(s) 247
NruI TCGCGA 1 cut(s) 117
NspI RCATGY 1 cut(s) 758
PfeI GAWTC 3 cut(s) 458, 546, 575
PfoI TCCNGGA 1 cut(s) 126
PkrI GCNGC 3 cut(s) 331, 607, 678
Psp6I CCWGG 3 cut(s) 126, 251, 442
PspGI CCWGG 3 cut(s) 126, 251, 442
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 1 cut(s) 245
PsuI RGATCY 1 cut(s) 81
RruI TCGCGA 1 cut(s) 117
RsaI GTAC 2 cut(s) 77, 289
RsaNI GTAC 2 cut(s) 76, 288
RseI CAYNNNNRTG 2 cut(s) 452, 753
SaqAI TTAA 7 cut(s) 69, 108, 161, 516, 638, 777, 814
SatI GCNGC 3 cut(s) 330, 606, 677
Sau3AI GATC 7 cut(s) 81, 167, 391, 412, 664, 721, 768
Sau96I GGNCC 1 cut(s) 245
ScaI AGTACT 1 cut(s) 289
ScrFI CCNGG 3 cut(s) 128, 253, 444
SduI GDGCHC 1 cut(s) 259
SfaNI GCATC 1 cut(s) 428
SinI GGWCC 1 cut(s) 245
SmiMI CAYNNNNRTG 2 cut(s) 452, 753
SmlI CTYRAG 2 cut(s) 160, 340
SmoI CTYRAG 2 cut(s) 160, 340
Sse9I AATT 9 cut(s) 51, 65, 98, 180, 397, 614, 681, 697, 798
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 3 cut(s) 126, 251, 442
TaaI ACNGT 5 cut(s) 190, 197, 373, 533, 636
TaqI TCGA 3 cut(s) 452, 618, 709
TasI AATT 9 cut(s) 51, 65, 98, 180, 397, 614, 681, 697, 798
TatI WGTACW 2 cut(s) 75, 287
TfiI GAWTC 3 cut(s) 458, 546, 575
Tru1I TTAA 7 cut(s) 69, 108, 161, 516, 638, 777, 814
Tru9I TTAA 7 cut(s) 69, 108, 161, 516, 638, 777, 814
TscAI CASTG 2 cut(s) 210, 538
TseI GCWGC 3 cut(s) 329, 605, 676
TspDTI ATGAA 1 cut(s) 291
TspRI CASTG 2 cut(s) 210, 538
Vha464I CTTAAG 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 3 cut(s) 65, 98, 180
XceI RCATGY 1 cut(s) 758
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 1 cut(s) 62
ZrmI AGTACT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.