Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0018340

Physical Location & Seq

Genomic Coordinates Forward (+)

53699296 .. 53702639

Gene Structure 3344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG314500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTAATGAACAAGGTCGTAAGGGCACCAGCTCGAGAGGAAGAAGGTCAACAGAACAAGAAACGGTTATTGGTGATTGCTCTGATCACAATTCCTATGATTATGATCATACTCAGAACAATGATGTATTATCTAAAAAGGAGAATACTCAAGTCAATTGGGATTATAGACAACATTAAAAGATCAGTTTGTAGACTATTAAATGTAATTTCAGCTACAGACAGTTTTAACATCAATGCTCCTAATCTGGCTACAAGTTGGAGAGGGTGGTTCATATATGTCTACAAGGATGAGACCTGGGTGAGCCAGACAAAATTGTCAGGAAACTGTTGCAGCCTAGGGTCTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

116

Amino Acids

13.36

Weight (kDa)

10.02

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018340)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01322
rosa_laevigata	RLG00000022497 RLG00000033859
rosa_roxburghii	Rroxscaffold_4G00317450 Rroxscaffold_6G00416200
rosa_rugosa	Rorug05G0519400
rosa_samantha	Rh4DG314500 Rh6CG256900 Rh6DG248900
rosa_wichuraiana	Rw1G010230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	316
AccB1I	GGYRCC	1 cut(s)	25
AccI	GTMKAC	2 cut(s)	193, 282
AjnI	CCWGG	1 cut(s)	296
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	2 cut(s)	32, 215
AluI	AGCT	2 cut(s)	32, 215
Alw26I	GTCTC	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	333
AspA2I	CCTAGG	1 cut(s)	337
AsuHPI	GGTGA	2 cut(s)	85, 313
AvaI	CYCGRG	1 cut(s)	33
AvrII	CCTAGG	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	345
BciT130I	CCWGG	1 cut(s)	298
BclI	TGATCA	2 cut(s)	84, 105
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	216
BisI	GCNGC	1 cut(s)	334
BlnI	CCTAGG	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	298
BmeT110I	CYCGRG	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	298
BpuEI	CTTGAG	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	297, 337
Bse8I	GATNNNNATC	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	2 cut(s)	297, 337
BseGI	GGATG	1 cut(s)	295
BseJI	GATNNNNATC	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	127
BseSI	GKGCMC	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	345
BshNI	GGYRCC	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	33
BsmAI	GTCTC	1 cut(s)	287
Bso31I	GGTCTC	1 cut(s)	287
BsoBI	CYCGRG	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp143I	GATC	3 cut(s)	84, 105, 182
BspCNI	CTCAG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	25
BspTNI	GGTCTC	1 cut(s)	287
BssECI	CCNNGG	2 cut(s)	297, 337
BssMI	GATC	3 cut(s)	84, 105, 182
BssT1I	CCWWGG	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	3 cut(s)	66, 224, 329
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	3 cut(s)	87, 108, 185
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	3 cut(s)	84, 105, 182
BstNI	CCWGG	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	295
CviJI	RGCY	5 cut(s)	32, 215, 251, 306, 336
CviKI_1	RGCY	5 cut(s)	32, 215, 251, 306, 336
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	3 cut(s)	86, 107, 184
DpnII	GATC	3 cut(s)	84, 105, 182
DrdI	GACNNNNNNGTC	1 cut(s)	316
DseDI	GACNNNNNNGTC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	337
Eco31I	GGTCTC	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	337
FaiI	YATR	8 cut(s)	98, 104, 110, 167, 275, 277, 279, 347
FbaI	TGATCA	2 cut(s)	84, 105
FblI	GTMKAC	2 cut(s)	193, 282
Fnu4HI	GCNGC	1 cut(s)	334
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	1 cut(s)	334
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HphI	GGTGA	2 cut(s)	85, 313
Hpy166II	GTNNAC	3 cut(s)	50, 194, 283
Hpy188I	TCNGA	2 cut(s)	84, 116
Hpy188III	TCNNGA	2 cut(s)	35, 321
Hpy8I	GTNNAC	3 cut(s)	50, 194, 283
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	3 cut(s)	66, 224, 329
HpyCH4V	TGCA	1 cut(s)	333
HpyF3I	CTNAG	1 cut(s)	113
Ksp22I	TGATCA	2 cut(s)	84, 105
Kzo9I	GATC	3 cut(s)	84, 105, 182
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	6 cut(s)	42, 233, 283, 306, 310, 320
Lsp1109I	GCAGC	1 cut(s)	345
MaeI	CTAG	1 cut(s)	338
MalI	GATC	3 cut(s)	86, 107, 184
MboI	GATC	3 cut(s)	84, 105, 182
MboII	GAAGA	1 cut(s)	53
MfeI	CAATTG	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	4 cut(s)	90, 156, 207, 314
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	2 cut(s)	31, 257
MseI	TTAA	3 cut(s)	177, 200, 228
MspR9I	CCNGG	1 cut(s)	298
MunI	CAATTG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	298
NdeII	GATC	3 cut(s)	84, 105, 182
NlaIV	GGNNCC	1 cut(s)	27
PaeR7I	CTCGAG	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	177, 200, 228
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	3 cut(s)	84, 105, 182
ScrFI	CCNGG	1 cut(s)	298
SduI	GDGCHC	1 cut(s)	28
SetI	ASST	5 cut(s)	18, 34, 49, 217, 299
SfcI	CTRYAG	1 cut(s)	216
Sfr274I	CTCGAG	1 cut(s)	33
SlaI	CTCGAG	1 cut(s)	33
SmlI	CTYRAG	2 cut(s)	33, 149
SmoI	CTYRAG	2 cut(s)	33, 149
Sse9I	AATT	4 cut(s)	90, 156, 207, 314
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	296
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	3 cut(s)	66, 224, 329
TaqI	TCGA	1 cut(s)	34
TasI	AATT	4 cut(s)	90, 156, 207, 314
Tru1I	TTAA	3 cut(s)	177, 200, 228
Tru9I	TTAA	3 cut(s)	177, 200, 228
TseI	GCWGC	1 cut(s)	333
TspDTI	ATGAA	2 cut(s)	23, 262
XhoI	CTCGAG	1 cut(s)	33
XmaJI	CCTAGG	1 cut(s)	337
XmiI	GTMKAC	2 cut(s)	193, 282
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.