FvH4_1g03840

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011506
Physical Location & Seq
Forward (+)
2042511 .. 2045112
2602 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03840.t2

Sequence Viewer

Length: 675 bp
ATGGGGGCCGAGAGCACCTCTAGTTCGGGCGGTGGGATTGATCGGAACGACAGGAGGTACGACACTCCGGTGGTCTTGAACGTCTACGACCTCACCCCTATGAACAATTACTCAGTTTGGTTCGGTCTTGGAATATTCCACTCCGGTATTGAAGTTCATGGTAAAGAGTATGGTTTTGGAGCTCATGACTTCCCAGTTAGTGGAGTTTTTGAAGTGGAACCAAAGGCCTGCCCGGGTTTCATTTACCGATGCTCTATTTCACTTGGTCGTATAAACATGTCTCCCACTGAATTTCGGACATTTATTGAGAATGTCGCTGCGGAGTATCATGGGGATACCTATCACCTCATTTCCAAGAATTGCAACCATTTTACAGATGACATAGCATGTAGGTTGACAGAAAGACGAATTCCTGGATGGGTGAATCGGCTTGCTCGACTAGGTTCTTTGTGCAGCTGTCTTCTTCCAGAAAGCCTTCAAGTGACTACTGTTAAACAGACTCCTGAATACCACCATGAGTCAGAAGATGGTACTGAATCTTTGACAATCACTACGCCTCGCGTGTCAACAGAGGTTGATGACGATCAAGAAAGACGTCTGCTGTCACCCTTGGCTGCAGTATCACCAATGTCTGGATGCGGGGACGTGACTTTTGTTAAAGAAGCCCATACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

225

Amino Acids

24.84

Weight (kDa)

5.22

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 23 - 157 1.4e-47 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 598
AccB7I CCANNNNNTGG 2 cut(s) 200, 632
AccI GTMKAC 1 cut(s) 84
AccII CGCG 1 cut(s) 561
AciI CCGC 3 cut(s) 30, 320, 639
AcsI RAATTY 2 cut(s) 290, 408
AcyI GRCGYC 1 cut(s) 595
AfaI GTAC 2 cut(s) 59, 532
AfiI CCNNNNNNNGG 2 cut(s) 200, 632
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 4 cut(s) 79, 152, 212, 479
AjiI CACGTC 1 cut(s) 646
AjnI CCWGG 1 cut(s) 412
AleI CACNNNNGTG 1 cut(s) 68
AluBI AGCT 2 cut(s) 182, 456
AluI AGCT 2 cut(s) 182, 456
Alw21I GWGCWC 2 cut(s) 17, 184
Alw26I GTCTC 1 cut(s) 285
Ama87I CYCGRG 1 cut(s) 232
AoxI GGCC 2 cut(s) 6, 225
ApeKI GCWGC 3 cut(s) 317, 453, 614
ApoI RAATTY 2 cut(s) 290, 408
ArsI GACNNNNNNTTYG 2 cut(s) 635, 667
Asp700I GAANNNNTTC 1 cut(s) 474
AspS9I GGNCC 1 cut(s) 6
AsuC2I CCSGG 2 cut(s) 233, 234
AsuHPI GGTGA 5 cut(s) 85, 335, 433, 597, 615
AvaI CYCGRG 1 cut(s) 232
BanII GRGCYC 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 452
Bbv12I GWGCWC 2 cut(s) 17, 184
BbvI GCAGC 3 cut(s) 304, 465, 601
BccI CCATC 2 cut(s) 411, 521
BciT130I CCWGG 1 cut(s) 414
BciVI GTATCC 1 cut(s) 328
BcnI CCSGG 2 cut(s) 233, 234
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 2 cut(s) 21, 440
BfmI CTRYAG 1 cut(s) 615
BfuI GTATCC 1 cut(s) 328
BisI GCNGC 3 cut(s) 318, 454, 615
BlsI GCNGC 3 cut(s) 319, 455, 616
Bme1390I CCNGG 3 cut(s) 233, 234, 414
BmeT110I CYCGRG 1 cut(s) 232
BmgBI CACGTC 1 cut(s) 646
BmgT120I GGNCC 1 cut(s) 6
BmiI GGNNCC 2 cut(s) 7, 219
BmrFI CCNGG 3 cut(s) 233, 234, 414
BmrI ACTGGG 1 cut(s) 188
BmsI GCATC 2 cut(s) 239, 626
BmuI ACTGGG 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 452
BplI GAGNNNNNCTC 1 cut(s) 34
BpuMI CCSGG 2 cut(s) 233, 234
BsaAI YACGTR 1 cut(s) 672
BsaBI GATNNNNATC 2 cut(s) 339, 582
BsaHI GRCGYC 1 cut(s) 595
BsaJI CCNNGG 2 cut(s) 232, 609
BsaWI WCCGGW 2 cut(s) 67, 143
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 632
Bse1I ACTGG 1 cut(s) 194
Bse8I GATNNNNATC 2 cut(s) 339, 582
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 2 cut(s) 232, 609
BseGI GGATG 2 cut(s) 422, 641
BseJI GATNNNNATC 2 cut(s) 339, 582
BseLI CCNNNNNNNGG 2 cut(s) 200, 632
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 194
BseXI GCAGC 3 cut(s) 304, 465, 601
BsgI GTGCAG 1 cut(s) 472
Bsh1236I CGCG 1 cut(s) 561
BshFI GGCC 2 cut(s) 8, 227
BsiHKAI GWGCWC 2 cut(s) 17, 184
BsiHKCI CYCGRG 1 cut(s) 232
BsiSI CCGG 3 cut(s) 68, 144, 233
BslFI GGGAC 1 cut(s) 656
BslI CCNNNNNNNGG 2 cut(s) 200, 632
BsmAI GTCTC 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 656
BsnI GGCC 2 cut(s) 8, 227
BsoBI CYCGRG 1 cut(s) 232
Bsp1286I GDGCHC 2 cut(s) 17, 184
Bsp143I GATC 2 cut(s) 40, 583
BspACI CCGC 3 cut(s) 30, 320, 639
BspANI GGCC 2 cut(s) 8, 227
BspCNI CTCAG 1 cut(s) 125
BspFNI CGCG 1 cut(s) 561
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 7, 219
BspMAI CTGCAG 1 cut(s) 619
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 2 cut(s) 232, 609
BssMI GATC 2 cut(s) 40, 583
BssNI GRCGYC 1 cut(s) 595
BssT1I CCWWGG 1 cut(s) 609
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 1 cut(s) 490
BstACI GRCGYC 1 cut(s) 595
BstBAI YACGTR 1 cut(s) 672
BstC8I GCNNGC 2 cut(s) 229, 432
BstDEI CTNAG 1 cut(s) 112
BstF5I GGATG 2 cut(s) 422, 641
BstFNI CGCG 1 cut(s) 561
BstKTI GATC 2 cut(s) 43, 586
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 2 cut(s) 40, 583
BstNI CCWGG 1 cut(s) 414
BstNSI RCATGY 2 cut(s) 280, 390
BstSCI CCNGG 3 cut(s) 231, 232, 412
BstSFI CTRYAG 1 cut(s) 615
BstUI CGCG 1 cut(s) 561
BstV1I GCAGC 3 cut(s) 304, 465, 601
BstV2I GAAGAC 1 cut(s) 452
BsuI GTATCC 1 cut(s) 328
BsuRI GGCC 2 cut(s) 8, 227
BtrI CACGTC 1 cut(s) 646
BtsCI GGATG 2 cut(s) 422, 641
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 229, 432
CciI TCATGA 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 6
Cfr9I CCCGGG 1 cut(s) 232
Csp6I GTAC 2 cut(s) 58, 531
CviAII CATG 6 cut(s) 158, 185, 277, 329, 387, 515
CviJI RGCY 8 cut(s) 8, 182, 227, 430, 456, 474, 614, 665
CviKI_1 RGCY 8 cut(s) 8, 182, 227, 430, 456, 474, 614, 665
CviQI GTAC 2 cut(s) 58, 531
DdeI CTNAG 1 cut(s) 112
DpnI GATC 2 cut(s) 42, 585
DpnII GATC 2 cut(s) 40, 583
Ecl136II GAGCTC 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 609
Eco147I AGGCCT 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 182
EcoRI GAATTC 1 cut(s) 408
EcoRII CCWGG 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 609
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 609
FaeI CATG 6 cut(s) 161, 188, 280, 332, 390, 518
FaqI GGGAC 1 cut(s) 656
FatI CATG 6 cut(s) 157, 184, 276, 328, 386, 514
FauI CCCGC 1 cut(s) 632
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 318, 454, 615
FokI GGATG 2 cut(s) 429, 648
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 3 cut(s) 318, 454, 615
FspBI CTAG 2 cut(s) 21, 440
GluI GCNGC 3 cut(s) 318, 454, 615
HaeIII GGCC 2 cut(s) 8, 227
HapII CCGG 3 cut(s) 68, 144, 233
Hin1I GRCGYC 1 cut(s) 595
Hin1II CATG 6 cut(s) 161, 188, 280, 332, 390, 518
HincII GTYRAC 2 cut(s) 396, 567
HindII GTYRAC 2 cut(s) 396, 567
HinfI GANTC 4 cut(s) 424, 499, 518, 536
HpaII CCGG 3 cut(s) 68, 144, 233
HphI GGTGA 5 cut(s) 85, 335, 433, 597, 615
Hpy166II GTNNAC 3 cut(s) 85, 396, 567
Hpy188I TCNGA 3 cut(s) 45, 297, 523
Hpy188III TCNNGA 6 cut(s) 76, 185, 467, 503, 587, 633
Hpy8I GTNNAC 3 cut(s) 85, 396, 567
HpyAV CCTTC 1 cut(s) 485
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4IV ACGT 4 cut(s) 81, 595, 645, 671
HpyCH4V TGCA 3 cut(s) 363, 453, 617
HpyF3I CTNAG 1 cut(s) 112
HpySE526I ACGT 4 cut(s) 81, 595, 645, 671
Hsp92I GRCGYC 1 cut(s) 595
Hsp92II CATG 6 cut(s) 161, 188, 280, 332, 390, 518
Kzo9I GATC 2 cut(s) 40, 583
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 3 cut(s) 304, 465, 601
LweI GCATC 2 cut(s) 239, 626
MaeI CTAG 2 cut(s) 21, 440
MaeII ACGT 4 cut(s) 81, 595, 645, 671
MaeIII GTNAC 3 cut(s) 481, 603, 646
MalI GATC 2 cut(s) 42, 585
MboI GATC 2 cut(s) 40, 583
MboII GAAGA 3 cut(s) 452, 455, 536
MhlI GDGCHC 2 cut(s) 17, 184
MluCI AATT 4 cut(s) 106, 290, 358, 408
MlyI GAGTC 2 cut(s) 493, 527
MnlI CCTC 6 cut(s) 28, 48, 101, 356, 565, 567
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 2 cut(s) 492, 657
MslI CAYNNNNRTG 2 cut(s) 68, 98
MspA1I CMGCKG 1 cut(s) 456
MspI CCGG 3 cut(s) 68, 144, 233
MspR9I CCNGG 3 cut(s) 233, 234, 414
MvaI CCWGG 1 cut(s) 414
MvnI CGCG 1 cut(s) 561
NciI CCSGG 2 cut(s) 233, 234
NdeII GATC 2 cut(s) 40, 583
NlaIII CATG 6 cut(s) 161, 188, 280, 332, 390, 518
NlaIV GGNNCC 2 cut(s) 7, 219
NmeAIII GCCGAG 1 cut(s) 34
NmuCI GTSAC 3 cut(s) 481, 603, 646
NspI RCATGY 2 cut(s) 280, 390
OliI CACNNNNGTG 1 cut(s) 68
PagI TCATGA 1 cut(s) 184
PceI AGGCCT 1 cut(s) 227
PciI ACATGT 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 433
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 2 cut(s) 424, 536
PflMI CCANNNNNTGG 2 cut(s) 200, 632
PfoI TCCNGGA 1 cut(s) 412
PkrI GCNGC 3 cut(s) 319, 455, 616
PleI GAGTC 2 cut(s) 493, 526
PpsI GAGTC 2 cut(s) 493, 526
Ppu21I YACGTR 1 cut(s) 672
PscI ACATGT 1 cut(s) 276
Psp124BI GAGCTC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 2 cut(s) 7, 219
PspPI GGNCC 1 cut(s) 6
PstI CTGCAG 1 cut(s) 619
PvuII CAGCTG 1 cut(s) 456
RsaI GTAC 2 cut(s) 59, 532
RsaNI GTAC 2 cut(s) 58, 531
RseI CAYNNNNRTG 2 cut(s) 68, 98
SacI GAGCTC 1 cut(s) 184
SaqAI TTAA 2 cut(s) 492, 657
SatI GCNGC 3 cut(s) 318, 454, 615
Sau3AI GATC 2 cut(s) 40, 583
Sau96I GGNCC 1 cut(s) 6
SchI GAGTC 2 cut(s) 493, 527
ScrFI CCNGG 3 cut(s) 233, 234, 414
SduI GDGCHC 2 cut(s) 17, 184
SfaNI GCATC 2 cut(s) 239, 626
SfcI CTRYAG 1 cut(s) 615
SmaI CCCGGG 1 cut(s) 234
SmiMI CAYNNNNRTG 2 cut(s) 68, 98
Sse9I AATT 4 cut(s) 106, 290, 358, 408
SseBI AGGCCT 1 cut(s) 227
SsiI CCGC 3 cut(s) 30, 320, 639
SspI AATATT 1 cut(s) 135
SspMI CTAG 2 cut(s) 21, 440
SstI GAGCTC 1 cut(s) 184
StuI AGGCCT 1 cut(s) 227
StyD4I CCNGG 3 cut(s) 231, 232, 412
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 1 cut(s) 490
TaiI ACGT 4 cut(s) 84, 598, 648, 674
TaqI TCGA 1 cut(s) 436
TaqII GACCGA 1 cut(s) 113
TasI AATT 4 cut(s) 106, 290, 358, 408
TfiI GAWTC 2 cut(s) 424, 536
Tru1I TTAA 2 cut(s) 492, 657
Tru9I TTAA 2 cut(s) 492, 657
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 3 cut(s) 481, 603, 646
TseI GCWGC 3 cut(s) 317, 453, 614
Tsp45I GTSAC 3 cut(s) 481, 603, 646
TspDTI ATGAA 3 cut(s) 116, 146, 229
TspMI CCCGGG 1 cut(s) 232
TspRI CASTG 1 cut(s) 292
Van91I CCANNNNNTGG 2 cut(s) 200, 632
XapI RAATTY 2 cut(s) 290, 408
XceI RCATGY 2 cut(s) 280, 390
XmaI CCCGGG 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 474
XspI CTAG 2 cut(s) 21, 440
ZraI GACGTC 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.