Prupe.7G238600_v2.0.a1

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011506
Physical Location & Seq
Reverse (-)
20611919 .. 20615410
3492 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G238600.5

Sequence Viewer

Length: 684 bp
ATGGGGGACGAGAGCACCTCCCACTCGGTCTCTCAACTTGGCGGGATTGATGGGAACAAAAGCTGTGAGACCCAGGTGGTGTTGAACGTCTACGACCTCACCCCTCTCAACAATTACACCGTTTGGTTCGGCCTCGGAATCTTTCACTCTGGTATTGAAGTCCATGGCAAAGAGTACGGTTTTGGAGCCCATGACTTCCCAGTCAGTGGAGTTTTTGAAGTGGAACCAAGGAGCTGCCCAGGTTTTATTTACCGGTGTTCTGTTTCACTTGGCCGCATAAATATGCATCCCTCTGAATTTCGGACATTTATTGAGAATGTTGCTTCAGAGTATCATGGGGATACCTATCACCTCATCTCCAAGAATTGCAACCATTTTACGGATGACATGGCATGTAGGTTGACACAAAAACGGATTCCCGGATGGGTGAATCGGCTCGCTCGGCTAGGTTCTTTGTGCAGTTGTCTTCTTCCTGAAAGCCTTCAAGTGACTACTGTTAAACAGATACCTGAATACCATCATGAGTCTGAAGAAGATGATACCGAAACTCTATCAATCACCACCCCTCGTGTATCAGAGGAATTGGATGATGATCAAGAGAAGCGCCTGCTGTCACCATTGGCTGCAATGTCTCCGGTGGCTGGAAGTGGAGATGTGACTTTTGTTAAAGAGGCTCACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

228

Amino Acids

25.25

Weight (kDa)

5.12

Isoelectric Point (pI)

51.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
AccB7I CCANNNNNTGG 1 cut(s) 206
AccI GTMKAC 1 cut(s) 90
AciI CCGC 2 cut(s) 42, 274
AcoI YGGCCR 1 cut(s) 271
AcsI RAATTY 1 cut(s) 296
AcuI CTGAAG 2 cut(s) 309, 549
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 3 cut(s) 206, 379, 641
AgeI ACCGGT 1 cut(s) 252
AgsI TTSAA 4 cut(s) 85, 158, 218, 485
AjnI CCWGG 2 cut(s) 72, 238
AluBI AGCT 2 cut(s) 63, 234
AluI AGCT 2 cut(s) 63, 234
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 3 cut(s) 34, 62, 636
AoxI GGCC 2 cut(s) 130, 271
ApeKI GCWGC 2 cut(s) 234, 623
ApoI RAATTY 1 cut(s) 296
AsiGI ACCGGT 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 480
AspLEI GCGC 1 cut(s) 606
AsuC2I CCSGG 1 cut(s) 420
AsuHPI GGTGA 5 cut(s) 91, 341, 439, 550, 606
BanII GRGCYC 1 cut(s) 190
BauI CACGAG 1 cut(s) 567
BbsI GAAGAC 1 cut(s) 458
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 2 cut(s) 221, 610
BccI CCATC 3 cut(s) 44, 417, 525
BciT130I CCWGG 2 cut(s) 74, 240
BciVI GTATCC 1 cut(s) 334
BclI TGATCA 1 cut(s) 592
BcnI CCSGG 1 cut(s) 420
BcoDI GTCTC 3 cut(s) 34, 62, 636
BfaI CTAG 1 cut(s) 446
BfoI RGCGCY 1 cut(s) 607
BfuI GTATCC 1 cut(s) 334
BisI GCNGC 3 cut(s) 235, 274, 624
BlsI GCNGC 3 cut(s) 236, 275, 625
Bme1390I CCNGG 3 cut(s) 74, 240, 420
BmiI GGNNCC 2 cut(s) 187, 225
BmrFI CCNGG 3 cut(s) 74, 240, 420
BmrI ACTGGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 295
BmuI ACTGGG 1 cut(s) 194
BpiI GAAGAC 1 cut(s) 458
BplI GAGNNNNNCTC 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 420
BsaBI GATNNNNATC 2 cut(s) 345, 591
BsaI GGTCTC 2 cut(s) 34, 62
BsaJI CCNNGG 5 cut(s) 72, 133, 163, 227, 238
BsaWI WCCGGW 2 cut(s) 252, 634
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 379, 641
Bse118I RCCGGY 1 cut(s) 252
Bse1I ACTGG 1 cut(s) 200
Bse3DI GCAATG 1 cut(s) 633
Bse8I GATNNNNATC 2 cut(s) 345, 591
BseBI CCWGG 2 cut(s) 74, 240
BseDI CCNNGG 5 cut(s) 72, 133, 163, 227, 238
BseGI GGATG 4 cut(s) 286, 388, 428, 592
BseJI GATNNNNATC 2 cut(s) 345, 591
BseLI CCNNNNNNNGG 3 cut(s) 206, 379, 641
BseMI GCAATG 1 cut(s) 633
BseNI ACTGG 1 cut(s) 200
BseXI GCAGC 2 cut(s) 221, 610
BsgI GTGCAG 1 cut(s) 478
BshFI GGCC 2 cut(s) 132, 273
BshTI ACCGGT 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 3 cut(s) 253, 420, 635
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 3 cut(s) 206, 379, 641
BsmAI GTCTC 3 cut(s) 34, 62, 636
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 2 cut(s) 132, 273
Bso31I GGTCTC 2 cut(s) 34, 62
Bsp1286I GDGCHC 2 cut(s) 17, 190
Bsp143I GATC 1 cut(s) 592
Bsp19I CCATGG 1 cut(s) 163
BspACI CCGC 2 cut(s) 42, 274
BspANI GGCC 2 cut(s) 132, 273
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 2 cut(s) 187, 225
BspTNI GGTCTC 2 cut(s) 34, 62
BsrDI GCAATG 1 cut(s) 633
BsrFI RCCGGY 1 cut(s) 252
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 5 cut(s) 72, 133, 163, 227, 238
BssMI GATC 1 cut(s) 592
BssSI CACGAG 1 cut(s) 567
BssT1I CCWWGG 2 cut(s) 163, 227
Bst2BI CACGAG 1 cut(s) 567
Bst2UI CCWGG 2 cut(s) 74, 240
Bst4CI ACNGT 3 cut(s) 121, 179, 496
BstC8I GCNNGC 2 cut(s) 438, 608
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 4 cut(s) 286, 388, 428, 592
BstH2I RGCGCY 1 cut(s) 607
BstHHI GCGC 1 cut(s) 606
BstKTI GATC 1 cut(s) 595
BstMAI GTCTC 3 cut(s) 34, 62, 636
BstMBI GATC 1 cut(s) 592
BstMWI GCNNNNNNNGC 1 cut(s) 442
BstNI CCWGG 2 cut(s) 74, 240
BstNSI RCATGY 1 cut(s) 396
BstSCI CCNGG 3 cut(s) 72, 238, 418
BstV1I GCAGC 2 cut(s) 221, 610
BstV2I GAAGAC 1 cut(s) 458
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 2 cut(s) 132, 273
BtgI CCRYGG 1 cut(s) 163
BtsCI GGATG 4 cut(s) 286, 388, 428, 592
BtsIMutI CAGTG 1 cut(s) 211
Cac8I GCNNGC 2 cut(s) 438, 608
CciI TCATGA 1 cut(s) 520
CfoI GCGC 1 cut(s) 606
Cfr10I RCCGGY 1 cut(s) 252
Csp6I GTAC 1 cut(s) 175
CspAI ACCGGT 1 cut(s) 252
CviAII CATG 6 cut(s) 164, 191, 335, 388, 393, 521
CviQI GTAC 1 cut(s) 175
DpnI GATC 1 cut(s) 594
DpnII GATC 1 cut(s) 592
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
EaeI YGGCCR 1 cut(s) 271
Eco130I CCWWGG 2 cut(s) 163, 227
Eco24I GRGCYC 1 cut(s) 190
Eco31I GGTCTC 2 cut(s) 34, 62
Eco57I CTGAAG 2 cut(s) 309, 549
EcoRII CCWGG 2 cut(s) 72, 238
EcoT14I CCWWGG 2 cut(s) 163, 227
EcoT22I ATGCAT 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 190
ErhI CCWWGG 2 cut(s) 163, 227
FaeI CATG 6 cut(s) 167, 194, 338, 391, 396, 524
FaiI YATR 8 cut(s) 165, 192, 278, 284, 336, 389, 394, 522
FaqI GGGAC 1 cut(s) 20
FatI CATG 6 cut(s) 163, 190, 334, 387, 392, 520
FauI CCCGC 1 cut(s) 35
FbaI TGATCA 1 cut(s) 592
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 235, 274, 624
FokI GGATG 4 cut(s) 273, 395, 435, 599
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 3 cut(s) 235, 274, 624
FspBI CTAG 1 cut(s) 446
GlaI GCGC 1 cut(s) 605
GluI GCNGC 3 cut(s) 235, 274, 624
HaeII RGCGCY 1 cut(s) 607
HaeIII GGCC 2 cut(s) 132, 273
HapII CCGG 3 cut(s) 253, 420, 635
HhaI GCGC 1 cut(s) 606
Hin1II CATG 6 cut(s) 167, 194, 338, 391, 396, 524
Hin6I GCGC 1 cut(s) 604
HinP1I GCGC 1 cut(s) 604
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HinfI GANTC 4 cut(s) 138, 415, 430, 524
HpaII CCGG 3 cut(s) 253, 420, 635
HphI GGTGA 5 cut(s) 91, 341, 439, 550, 606
Hpy166II GTNNAC 2 cut(s) 91, 402
Hpy188I TCNGA 6 cut(s) 137, 295, 303, 328, 529, 577
Hpy188III TCNNGA 3 cut(s) 473, 521, 596
Hpy8I GTNNAC 2 cut(s) 91, 402
HpyAV CCTTC 1 cut(s) 491
HpyCH4III ACNGT 3 cut(s) 121, 179, 496
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 4 cut(s) 286, 369, 459, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 442
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 6 cut(s) 167, 194, 338, 391, 396, 524
HspAI GCGC 1 cut(s) 604
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 1 cut(s) 592
LmnI GCTCC 2 cut(s) 185, 231
Lsp1109I GCAGC 2 cut(s) 221, 610
LweI GCATC 1 cut(s) 295
MaeI CTAG 1 cut(s) 446
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 3 cut(s) 487, 612, 655
MalI GATC 1 cut(s) 594
MboI GATC 1 cut(s) 592
MboII GAAGA 4 cut(s) 458, 461, 542, 545
MhlI GDGCHC 2 cut(s) 17, 190
MluCI AATT 4 cut(s) 112, 296, 364, 581
MlyI GAGTC 1 cut(s) 533
MnlI CCTC 9 cut(s) 28, 107, 114, 143, 301, 362, 571, 576, 664
Mph1103I ATGCAT 1 cut(s) 288
MroXI GAANNNNTTC 1 cut(s) 480
MseI TTAA 2 cut(s) 498, 666
MslI CAYNNNNRTG 1 cut(s) 281
MspI CCGG 3 cut(s) 253, 420, 635
MspR9I CCNGG 3 cut(s) 74, 240, 420
MvaI CCWGG 2 cut(s) 74, 240
MwoI GCNNNNNNNGC 1 cut(s) 442
NciI CCSGG 1 cut(s) 420
NcoI CCATGG 1 cut(s) 163
NdeII GATC 1 cut(s) 592
NlaIII CATG 6 cut(s) 167, 194, 338, 391, 396, 524
NlaIV GGNNCC 2 cut(s) 187, 225
NmeAIII GCCGAG 1 cut(s) 421
NmuCI GTSAC 3 cut(s) 487, 612, 655
NsiI ATGCAT 1 cut(s) 288
NspI RCATGY 1 cut(s) 396
PagI TCATGA 1 cut(s) 520
PdmI GAANNNNTTC 1 cut(s) 480
PfeI GAWTC 3 cut(s) 138, 415, 430
PflMI CCANNNNNTGG 1 cut(s) 206
PfoI TCCNGGA 1 cut(s) 418
PinAI ACCGGT 1 cut(s) 252
PkrI GCNGC 3 cut(s) 236, 275, 625
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
Psp6I CCWGG 2 cut(s) 72, 238
PspGI CCWGG 2 cut(s) 72, 238
PspN4I GGNNCC 2 cut(s) 187, 225
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 281
SaqAI TTAA 2 cut(s) 498, 666
SatI GCNGC 3 cut(s) 235, 274, 624
Sau3AI GATC 1 cut(s) 592
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 3 cut(s) 74, 240, 420
SduI GDGCHC 2 cut(s) 17, 190
SfaNI GCATC 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 281
Sse9I AATT 4 cut(s) 112, 296, 364, 581
SsiI CCGC 2 cut(s) 42, 274
SspMI CTAG 1 cut(s) 446
StyD4I CCNGG 3 cut(s) 72, 238, 418
StyI CCWWGG 2 cut(s) 163, 227
TaaI ACNGT 3 cut(s) 121, 179, 496
TaiI ACGT 1 cut(s) 90
TaqII GACCGA 1 cut(s) 16
TasI AATT 4 cut(s) 112, 296, 364, 581
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 3 cut(s) 138, 415, 430
Tru1I TTAA 2 cut(s) 498, 666
Tru9I TTAA 2 cut(s) 498, 666
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 3 cut(s) 487, 612, 655
TseI GCWGC 2 cut(s) 234, 623
Tsp45I GTSAC 3 cut(s) 487, 612, 655
TspGWI ACGGA 2 cut(s) 395, 427
TspRI CASTG 1 cut(s) 211
Van91I CCANNNNNTGG 1 cut(s) 206
XapI RAATTY 1 cut(s) 296
XceI RCATGY 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 480
XspI CTAG 1 cut(s) 446
Zsp2I ATGCAT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.