Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011506

Physical Location & Seq

Genomic Coordinates Forward (+)

11044942 .. 11047115

Gene Structure 2174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g15840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGGGTTGGAGAACACCTCTCGACGCGGCGGCGGGATTGAAAACAGCAGCAAGGGCTACGAGACACAGGTGGTGTTGAATGTCTACGACCTCACCCCCCTCAATAATTACACCGTCTGGTTCGGTCTCGGAATCTTTCACTCCGGTATTGAAGTCCATGGCAAAGAGTATGGTTTTGGAGCCCATGACTTCCCAGTTAGTGGAGTTTTTGAAGTGGAACCAAGGAGCTGCCCAGGTTTCATTTATCGATGTTCCGTTCAACTTGGCCGTATAAATATGCCTCCTTCTGAATTTAGGACATTTATTGAGCATGTTGCGGCAGAGTATCATGGGGATACCTATCACCTCATCTCCAAGAATTGTAACCATTTCACGGATGACATGGCTCGTAGGTTGACAGAAAAACAGGTTCCTGGATGGGTGAATCGACTTGCTCGCCTAGGTGCCTTGTGCAGTTGTCTTCTTCCCGAAAGCCTTCAAGTGACCACTGTTAAACAGATACCCGAATACCATCATGAGTCAGATTCTCTAGAAGAAGATGGTACTGAAACCCTATCAATCACAACGCCTCGTATGTCAGCGGAAGTTGATGATGATCAAGAAAAACGCCTGCTGTCTCCACTGGCTTCACTTTCACCGGTGGCGGGAAGTGGAGATGTAACTTTCGTTAAAGAGGCTCAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C97

Protein Analysis

229

Amino Acids

25.37

Weight (kDa)

5.25

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011506)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03840 FvH4_1g03840 FvH4_1g03840
malus_domestica	MD02G1036800.v1.1 MD15G1176900.v1.1
prunus_persica	Prupe.7G238600_v2.0.a1 Prupe.7G238600_v2.0.a1 Prupe.7G238600_v2.0.a1 Prupe.7G238600_v2.0.a1
pyrus_communis	pycom15g15840
rosa_chinensis	RchiOBHm_Chr2g0089231
rosa_laevigata	RLG00000016007
rosa_multiflora	Rmu_sc0008322.1_g000021 Rmu_sc0027405.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152120
rosa_rugosa	Rorug01G0488600 Rorug01G0488600
rosa_samantha	Rh2AG044400 Rh2DG043300
rosa_wichuraiana	Rw2G003880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	443
AccB7I	CCANNNNNTGG	1 cut(s)	200
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	1 cut(s)	27
AciI	CCGC	6 cut(s)	27, 30, 33, 317, 581, 644
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	290
AfaI	GTAC	1 cut(s)	544
AfiI	CCNNNNNNNGG	3 cut(s)	200, 373, 644
AgeI	ACCGGT	1 cut(s)	637
AgsI	TTSAA	6 cut(s)	41, 79, 152, 212, 260, 479
AjnI	CCWGG	2 cut(s)	232, 412
AluBI	AGCT	1 cut(s)	228
AluI	AGCT	1 cut(s)	228
Alw26I	GTCTC	3 cut(s)	56, 131, 621
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	2 cut(s)	48, 228
ApoI	RAATTY	1 cut(s)	290
AsiGI	ACCGGT	1 cut(s)	637
Asp700I	GAANNNNTTC	1 cut(s)	474
AspA2I	CCTAGG	1 cut(s)	439
AsuHPI	GGTGA	4 cut(s)	85, 335, 433, 627
AvrII	CCTAGG	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	452
BbvI	GCAGC	2 cut(s)	60, 215
BccI	CCATC	3 cut(s)	411, 519, 533
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	2 cut(s)	234, 414
BciVI	GTATCC	1 cut(s)	328
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	3 cut(s)	56, 131, 621
BfaI	CTAG	2 cut(s)	440, 530
BfuI	GTATCC	1 cut(s)	328
BisI	GCNGC	5 cut(s)	28, 31, 49, 229, 318
BlnI	CCTAGG	1 cut(s)	439
BlsI	GCNGC	5 cut(s)	29, 32, 50, 230, 319
Bme1390I	CCNGG	2 cut(s)	234, 414
BmiI	GGNNCC	4 cut(s)	181, 219, 411, 445
BmrFI	CCNGG	2 cut(s)	234, 414
BmrI	ACTGGG	1 cut(s)	188
BmuI	ACTGGG	1 cut(s)	188
BpiI	GAAGAC	1 cut(s)	452
BplI	GAGNNNNNCTC	1 cut(s)	34
Bsa29I	ATCGAT	1 cut(s)	247
BsaBI	GATNNNNATC	2 cut(s)	339, 594
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	4 cut(s)	157, 221, 232, 439
BsaWI	WCCGGW	2 cut(s)	143, 637
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 373, 644
Bse118I	RCCGGY	1 cut(s)	637
Bse1I	ACTGG	2 cut(s)	194, 627
Bse8I	GATNNNNATC	2 cut(s)	339, 594
BseBI	CCWGG	2 cut(s)	234, 414
BseCI	ATCGAT	1 cut(s)	247
BseDI	CCNNGG	4 cut(s)	157, 221, 232, 439
BseGI	GGATG	2 cut(s)	382, 422
BseJI	GATNNNNATC	2 cut(s)	339, 594
BseLI	CCNNNNNNNGG	3 cut(s)	200, 373, 644
BseNI	ACTGG	2 cut(s)	194, 627
BseXI	GCAGC	2 cut(s)	60, 215
BsgI	GTGCAG	1 cut(s)	472
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	267
BshNI	GGYRCC	1 cut(s)	443
BshTI	ACCGGT	1 cut(s)	637
BshVI	ATCGAT	1 cut(s)	247
BsiSI	CCGG	2 cut(s)	144, 638
BslI	CCNNNNNNNGG	3 cut(s)	200, 373, 644
BsmAI	GTCTC	3 cut(s)	56, 131, 621
BsnI	GGCC	1 cut(s)	267
Bso31I	GGTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	595
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	6 cut(s)	27, 30, 33, 317, 581, 644
BspANI	GGCC	1 cut(s)	267
BspDI	ATCGAT	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	4 cut(s)	181, 219, 411, 445
BspT107I	GGYRCC	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	637
BsrI	ACTGG	2 cut(s)	194, 627
BssAI	RCCGGY	1 cut(s)	637
BssECI	CCNNGG	4 cut(s)	157, 221, 232, 439
BssMI	GATC	1 cut(s)	595
BssT1I	CCWWGG	3 cut(s)	157, 221, 439
Bst2UI	CCWGG	2 cut(s)	234, 414
Bst4CI	ACNGT	2 cut(s)	115, 490
BstC8I	GCNNGC	2 cut(s)	436, 611
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	2 cut(s)	382, 422
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	1 cut(s)	598
BstMAI	GTCTC	3 cut(s)	56, 131, 621
BstMBI	GATC	1 cut(s)	595
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	2 cut(s)	234, 414
BstNSI	RCATGY	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	232, 412
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	60, 215
BstV2I	GAAGAC	1 cut(s)	452
Bsu15I	ATCGAT	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	267
BsuTUI	ATCGAT	1 cut(s)	247
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	382, 422
BtsIMutI	CAGTG	2 cut(s)	486, 620
Cac8I	GCNNGC	2 cut(s)	436, 611
CciI	TCATGA	1 cut(s)	514
Cfr10I	RCCGGY	1 cut(s)	637
ClaI	ATCGAT	1 cut(s)	247
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	543
CspAI	ACCGGT	1 cut(s)	637
CviAII	CATG	6 cut(s)	158, 185, 311, 329, 382, 515
CviJI	RGCY	8 cut(s)	57, 182, 228, 267, 386, 474, 626, 677
CviKI_1	RGCY	8 cut(s)	57, 182, 228, 267, 386, 474, 626, 677
CviQI	GTAC	1 cut(s)	543
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
EaeI	YGGCCR	1 cut(s)	265
Eco130I	CCWWGG	3 cut(s)	157, 221, 439
Eco24I	GRGCYC	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	232, 412
EcoT14I	CCWWGG	3 cut(s)	157, 221, 439
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	3 cut(s)	157, 221, 439
FaeI	CATG	6 cut(s)	161, 188, 314, 332, 385, 518
FatI	CATG	6 cut(s)	157, 184, 310, 328, 381, 514
FauI	CCCGC	2 cut(s)	26, 637
FbaI	TGATCA	1 cut(s)	595
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	5 cut(s)	28, 31, 49, 229, 318
FokI	GGATG	2 cut(s)	389, 429
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	5 cut(s)	28, 31, 49, 229, 318
FspBI	CTAG	2 cut(s)	440, 530
GluI	GCNGC	5 cut(s)	28, 31, 49, 229, 318
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	2 cut(s)	144, 638
HgaI	GACGC	1 cut(s)	33
Hin1II	CATG	6 cut(s)	161, 188, 314, 332, 385, 518
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	4 cut(s)	132, 424, 518, 524
HpaII	CCGG	2 cut(s)	144, 638
HphI	GGTGA	4 cut(s)	85, 335, 433, 627
Hpy166II	GTNNAC	2 cut(s)	85, 396
Hpy188I	TCNGA	3 cut(s)	131, 289, 523
Hpy188III	TCNNGA	5 cut(s)	21, 467, 515, 530, 599
Hpy8I	GTNNAC	2 cut(s)	85, 396
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	2 cut(s)	294, 485
HpyCH4III	ACNGT	2 cut(s)	115, 490
HpyCH4V	TGCA	1 cut(s)	453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
Hsp92II	CATG	6 cut(s)	161, 188, 314, 332, 385, 518
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	1 cut(s)	595
LmnI	GCTCC	2 cut(s)	179, 225
Lsp1109I	GCAGC	2 cut(s)	60, 215
MaeI	CTAG	2 cut(s)	440, 530
MaeIII	GTNAC	3 cut(s)	362, 481, 658
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MboII	GAAGA	4 cut(s)	452, 455, 545, 548
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	3 cut(s)	106, 290, 358
MlyI	GAGTC	1 cut(s)	527
MnlI	CCTC	7 cut(s)	28, 101, 110, 291, 356, 579, 667
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	2 cut(s)	492, 669
MspA1I	CMGCKG	1 cut(s)	581
MspI	CCGG	2 cut(s)	144, 638
MspR9I	CCNGG	2 cut(s)	234, 414
MvaI	CCWGG	2 cut(s)	234, 414
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	54
NcoI	CCATGG	1 cut(s)	157
NdeII	GATC	1 cut(s)	595
NlaIII	CATG	6 cut(s)	161, 188, 314, 332, 385, 518
NlaIV	GGNNCC	4 cut(s)	181, 219, 411, 445
NmuCI	GTSAC	1 cut(s)	481
NspI	RCATGY	1 cut(s)	314
PagI	TCATGA	1 cut(s)	514
PdmI	GAANNNNTTC	1 cut(s)	474
PfeI	GAWTC	3 cut(s)	132, 424, 524
PflMI	CCANNNNNTGG	1 cut(s)	200
PfoI	TCCNGGA	1 cut(s)	412
PinAI	ACCGGT	1 cut(s)	637
PkrI	GCNGC	5 cut(s)	29, 32, 50, 230, 319
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
Psp6I	CCWGG	2 cut(s)	232, 412
PspGI	CCWGG	2 cut(s)	232, 412
PspN4I	GGNNCC	4 cut(s)	181, 219, 411, 445
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
SaqAI	TTAA	2 cut(s)	492, 669
SatI	GCNGC	5 cut(s)	28, 31, 49, 229, 318
Sau3AI	GATC	1 cut(s)	595
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	2 cut(s)	234, 414
SduI	GDGCHC	1 cut(s)	184
SgrAI	CRCCGGYG	1 cut(s)	637
Sse9I	AATT	3 cut(s)	106, 290, 358
SsiI	CCGC	6 cut(s)	27, 30, 33, 317, 581, 644
SspMI	CTAG	2 cut(s)	440, 530
StyD4I	CCNGG	2 cut(s)	232, 412
StyI	CCWWGG	3 cut(s)	157, 221, 439
TaaI	ACNGT	2 cut(s)	115, 490
TaqI	TCGA	3 cut(s)	22, 247, 427
TaqII	GACCGA	1 cut(s)	113
TasI	AATT	3 cut(s)	106, 290, 358
TauI	GCSGC	3 cut(s)	30, 33, 320
TfiI	GAWTC	3 cut(s)	132, 424, 524
Tru1I	TTAA	2 cut(s)	492, 669
Tru9I	TTAA	2 cut(s)	492, 669
TscAI	CASTG	2 cut(s)	493, 627
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	2 cut(s)	48, 228
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	1 cut(s)	229
TspGWI	ACGGA	2 cut(s)	244, 389
TspRI	CASTG	2 cut(s)	493, 627
Van91I	CCANNNNNTGG	1 cut(s)	200
XapI	RAATTY	1 cut(s)	290
XbaI	TCTAGA	1 cut(s)	529
XceI	RCATGY	1 cut(s)	314
XmaJI	CCTAGG	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	474
XspI	CTAG	2 cut(s)	440, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.